RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TMED3Q9Y3Q3 217 aa5.68□□□□□ -1.5
VIM-202ENST00000421459 U3KQ87 197 aa5.68□□□□□ -1.5
VIM-202ENST00000421459 TRAV8-2A0A0B4J237 113 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 TEX48A0A1B0GUV7 120 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 ANKRD20A5PA0PJZ0 165 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 PLAC8L1A1L4L8 177 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 SNRPGP15A8MWD9 76 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 F5H768 121 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 ISLRO14498 428 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 PTTG1O95997 202 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 ORM2P19652 201 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 GPX4P36969 197 aaPredicted RBP5.67□□□□□ -1.5
VIM-202ENST00000421459 CCR6P51684 374 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 CNN1P51911 297 aaKnown RBP5.67□□□□□ -1.5
VIM-202ENST00000421459 DEFA1P59665 94 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 DEFA3P59666 94 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 RGS21Q2M5E4 152 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 C1orf194Q5T5A4 169 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 NOXA1Q86UR1 476 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 C6orf223Q8N319 242 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 OR11H7Q8NGC8 314 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 OR1S1Q8NH92 325 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 SLC35E1Q96K37 410 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 IGF2BP2-AS1Q96M15 143 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 UHRF2Q96PU4 802 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 RPRMQ9NS64 109 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 LINC00588Q9Y4M8 146 aa5.67□□□□□ -1.5
VIM-202ENST00000421459 MUC4Q99102 2169 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 A0A0B4J2A0 478 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 ZNF98A6NK75 572 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 A8MTW9 85 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 CDK2AP2O75956 126 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 AKAIN1P0CW23 69 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 HTN1P15515 57 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 AP3S2P59780 193 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 FGL1Q08830 312 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 SURF2Q15527 256 aaPredicted RBP5.66□□□□□ -1.5
VIM-202ENST00000421459 SPATA31B1PQ5VZV4 182 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 SPATA12Q7Z6I5 190 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 THAP8Q8NA92 274 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 C15orf53Q8NAA6 179 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 RNF141Q8WVD5 230 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 IL22RA2Q969J5 263 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 TRGV9Q99603 122 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 KRTAP1-5Q9BYS1 174 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 SHPKQ9UHJ6 478 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 KCNIP3Q9Y2W7 256 aa5.66□□□□□ -1.5
VIM-202ENST00000421459 NACAE9PAV3 2078 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 NAP1L6A6NFF2 107 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 PRSS46E5RG02 174 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 LYRM1O43325 122 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 PITX3O75364 302 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 SNRPCP09234 159 aaKnown RBP5.65□□□□□ -1.5
VIM-202ENST00000421459 BTCP35070 178 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 FUSP35637 526 aaKnown RBP eCLIP5.65□□□□□ -1.5
VIM-202ENST00000421459 NUP62P37198 522 aaPredicted RBP5.65□□□□□ -1.5
VIM-202ENST00000421459 GALR1P47211 349 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 INPP1P49441 399 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 KRTAP10-2P60368 255 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 DLK1P80370 383 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 KIR3DS1Q14943 382 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 Q6ZNX1 250 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 TOMM5Q8N4H5 51 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 LINC01587Q99440 93 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 PRRT1Q99946 306 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 SCRT2Q9NQ03 307 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 MCUBQ9NWR8 336 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 PFDN2Q9UHV9 154 aa5.65□□□□□ -1.5
VIM-202ENST00000421459 MYCBP2O75592 4640 aa5.65□□□□□ -1.51
VIM-202ENST00000421459 LYRM9A8MSI8 78 aa5.64□□□□□ -1.51
VIM-202ENST00000421459 H3BP45 60 aa5.64□□□□□ -1.51
VIM-202ENST00000421459 WRBO00258 174 aa5.64□□□□□ -1.51
VIM-202ENST00000421459 INSP01308 110 aa5.64□□□□□ -1.51
VIM-202ENST00000421459 FAM3BP58499 235 aaPredicted RBP5.64□□□□□ -1.51
VIM-202ENST00000421459 MZT2BQ6NZ67 158 aa5.64□□□□□ -1.51
VIM-202ENST00000421459 SSX7Q7RTT5 188 aa5.64□□□□□ -1.51
VIM-202ENST00000421459 NRARPQ7Z6K4 114 aa5.64□□□□□ -1.51
VIM-202ENST00000421459 Q8N1X5 172 aa5.64□□□□□ -1.51
VIM-202ENST00000421459 OR1B1Q8NGR6 318 aa5.64□□□□□ -1.51
VIM-202ENST00000421459 PARD6GQ9BYG4 376 aaPredicted RBP5.64□□□□□ -1.51
VIM-202ENST00000421459 VPS13BQ7Z7G8 4022 aa5.64□□□□□ -1.51
VIM-202ENST00000421459 A0A0J9YY99 117 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 CBY3A6NI87 242 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 CENPXA8MT69 81 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 DUSP14O95147 198 aaKnown RBP5.63□□□□□ -1.51
VIM-202ENST00000421459 ATP5G1P05496 136 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 FABP1P07148 127 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 FAUP35544 74 aaKnown RBP5.63□□□□□ -1.51
VIM-202ENST00000421459 ATP5G3P48201 142 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 MEOX2P50222 304 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 RAB11AP62491 216 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 RHOBP62745 196 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 HIST1H1AQ02539 215 aaPredicted RBP5.63□□□□□ -1.51
VIM-202ENST00000421459 OR5I1Q13606 314 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 SPANXN5Q5MJ07 72 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 TMED4Q7Z7H5 227 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 ZNF738Q8NE65 137 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 BPIFCQ8NFQ6 507 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 Q9H8V8 135 aa5.63□□□□□ -1.51
VIM-202ENST00000421459 NOP10Q9NPE3 64 aaKnown RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms