RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TMEM131Q92545 1883 aa2.65□□□□□ -1.98
VPS54-204ENST00000416400 TMEM189A5PLL7 270 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 MEIS3P1A6NDR6 274 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 CRYM-AS1A6NIL9 109 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 CEBPZOSA8MTT3 80 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 LGALS9O00182 355 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 CDC42EP2O14613 210 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 DEGS1O15121 323 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 PDE6DO43924 150 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 ZNF737O75373 536 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 HYPMO75409 117 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 S1PR2O95136 353 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 EPPINO95925 133 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 HAND1O96004 215 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 LHBP01229 141 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 IGKV1-39P01597 117 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 IGKV1D-39P04432 117 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 GPX1P07203 203 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 SLC25A6P12236 298 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 HIST1H1CP16403 213 aaKnown RBP2.65□□□□□ -1.99
VPS54-204ENST00000416400 ATP6V0CP27449 155 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 MPV17P39210 176 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 LGALS7P47929 136 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 GNG4P50150 75 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 RHOBP62745 196 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 HBG1P69891 147 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 HBG2P69892 147 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 ATP5G2Q06055 141 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 FMODQ06828 376 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 LY6EQ16553 131 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 CEACAM16Q2WEN9 425 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 TMEM249Q2WGJ8 235 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 HLA-DRB5Q30154 266 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 SPIN3Q5JUX0 258 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 MORN3Q6PF18 240 aaPredicted RBP2.65□□□□□ -1.99
VPS54-204ENST00000416400 RASL11AQ6T310 242 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 FAM231DQ6ZW35 169 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 TMEM144Q7Z5S9 345 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 DEFB125Q8N687 156 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 LINC00337Q8N6G1 96 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 CDRT4Q8N9R6 151 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 ZFP62Q8NB50 900 aaPredicted RBP2.65□□□□□ -1.99
VPS54-204ENST00000416400 OR51T1Q8NGJ9 327 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 OR4P4Q8NGL7 312 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 SLC25A40Q8TBP6 338 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 MRPL30Q8TCC3 161 aaKnown RBP2.65□□□□□ -1.99
VPS54-204ENST00000416400 MRAP2Q96G30 205 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 SLC25A44Q96H78 314 aaPredicted RBP2.65□□□□□ -1.99
VPS54-204ENST00000416400 GPER1Q99527 375 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 SMIM7Q9BQ49 75 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 PRSS27Q9BQR3 290 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 GNB1LQ9BYB4 327 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 SMIM3Q9BZL3 60 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 SND1-IT1Q9HBX3 110 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 GNG13Q9P2W3 67 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 RABAC1Q9UI14 185 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 TRAPPC2LQ9UL33 140 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 TIMM9Q9Y5J7 89 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 INSIG2Q9Y5U4 225 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 ZNF638Q14966 1978 aaKnown RBP2.65□□□□□ -1.99
VPS54-204ENST00000416400 PHLPP1O60346 1717 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 ABCA3Q99758 1704 aa2.65□□□□□ -1.99
VPS54-204ENST00000416400 IGKV1-6A0A0C4DH72 117 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 A0A0D9SEW6 157 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 A0A0G2JMM0 328 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 LOC102725191A0A1B0GVB3 256 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 MDFIC2A0A1B0GVS7 189 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 A0A1B0GX12 115 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 A0A1W2PPB8 328 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 TMEM14DPA8MWL7 114 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 KIR3DP1A8MWS1 328 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 PRAMEF26H0Y7S4 382 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 KLRC4-KLRK1H3BQV0 150 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 H3BRM9 83 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 TNFP01375 233 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 HLA-DRB1P01911 266 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 HBZP02008 142 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 IGLC1P0CG04 106 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 ZNF728P0DKX0 622 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 IL9P15248 144 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 HIST1H1DP16402 221 aaKnown RBP2.64□□□□□ -1.99
VPS54-204ENST00000416400 IL12BP29460 328 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 GRPRP30550 384 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 PPP1CCP36873 323 aaKnown RBP2.64□□□□□ -1.99
VPS54-204ENST00000416400 SSR2P43308 183 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 SPINT3P49223 89 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 HINT1P49773 126 aaPredicted RBP2.64□□□□□ -1.99
VPS54-204ENST00000416400 TCL1AP56279 114 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 KRTDAPP60985 99 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 SUPT4H1P63272 117 aaKnown RBP2.64□□□□□ -1.99
VPS54-204ENST00000416400 RUNX1Q01196 453 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 MEF2BQ02080 365 aaPredicted RBP2.64□□□□□ -1.99
VPS54-204ENST00000416400 AMMECR1LQ6DCA0 310 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 SLC48A1Q6P1K1 146 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 SLC25A34Q6PIV7 304 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 PRNTQ86SH4 94 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 OTOSQ8NHW6 89 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 OR5P3Q8WZ94 311 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 FGF13Q92913 245 aa2.64□□□□□ -1.99
VPS54-204ENST00000416400 Q96M85 177 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms