RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 EWSR1Q01844 656 aaKnown RBP eCLIP15.23■□□□□ 0.03
VSX1-204ENST00000409958 UHRF2Q96PU4 802 aa15.23■□□□□ 0.03
VSX1-204ENST00000409958 RSG1Q9BU20 258 aa15.23■□□□□ 0.03
VSX1-204ENST00000409958 MPC2O95563 127 aa15.22■□□□□ 0.03
VSX1-204ENST00000409958 SPP1P10451 314 aa15.22■□□□□ 0.03
VSX1-204ENST00000409958 RPL7P18124 248 aaKnown RBP15.22■□□□□ 0.03
VSX1-204ENST00000409958 NHLH2Q02577 135 aa15.22■□□□□ 0.03
VSX1-204ENST00000409958 BAXQ07812 192 aa15.22■□□□□ 0.03
VSX1-204ENST00000409958 CHAC2Q8WUX2 184 aa15.22■□□□□ 0.03
VSX1-204ENST00000409958 RNF126Q9BV68 326 aa15.22■□□□□ 0.03
VSX1-204ENST00000409958 ELOA3CA0A087WX78 387 aaPredicted RBP15.21■□□□□ 0.03
VSX1-204ENST00000409958 CA1P00915 261 aaPredicted RBP15.21■□□□□ 0.03
VSX1-204ENST00000409958 PRR20EP86478 221 aa15.21■□□□□ 0.03
VSX1-204ENST00000409958 PRR20CP86479 221 aa15.21■□□□□ 0.03
VSX1-204ENST00000409958 PRR20DP86480 221 aa15.21■□□□□ 0.03
VSX1-204ENST00000409958 PRR20BP86481 221 aa15.21■□□□□ 0.03
VSX1-204ENST00000409958 PRR20AP86496 221 aa15.21■□□□□ 0.03
VSX1-204ENST00000409958 MORN3Q6PF18 240 aaPredicted RBP15.21■□□□□ 0.03
VSX1-204ENST00000409958 GATAD1Q8WUU5 269 aa15.21■□□□□ 0.03
VSX1-204ENST00000409958 C17orf77Q96MU5 243 aa15.21■□□□□ 0.03
VSX1-204ENST00000409958 LINC00052Q96N35 136 aa15.21■□□□□ 0.03
VSX1-204ENST00000409958 COX7A2P2O60397 106 aa15.2■□□□□ 0.02
VSX1-204ENST00000409958 MPDU1O75352 247 aa15.2■□□□□ 0.02
VSX1-204ENST00000409958 RPL29P47914 159 aaKnown RBP15.2■□□□□ 0.02
VSX1-204ENST00000409958 TMEM41BQ5BJD5 291 aa15.2■□□□□ 0.02
VSX1-204ENST00000409958 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.2■□□□□ 0.02
VSX1-204ENST00000409958 Q6ZRG5 221 aa15.2■□□□□ 0.02
VSX1-204ENST00000409958 OR5C1Q8NGR4 320 aa15.2■□□□□ 0.02
VSX1-204ENST00000409958 C16orf92Q96LL3 132 aa15.2■□□□□ 0.02
VSX1-204ENST00000409958 H3BMM0 161 aa15.19■□□□□ 0.02
VSX1-204ENST00000409958 LYL1P12980 280 aa15.19■□□□□ 0.02
VSX1-204ENST00000409958 HLA-DRB4P13762 266 aa15.19■□□□□ 0.02
VSX1-204ENST00000409958 ATF4P18848 351 aaPredicted RBP15.19■□□□□ 0.02
VSX1-204ENST00000409958 FGF7P21781 194 aa15.19■□□□□ 0.02
VSX1-204ENST00000409958 OPCMLQ14982 345 aa15.19■□□□□ 0.02
VSX1-204ENST00000409958 MIC13Q5XKP0 118 aa15.19■□□□□ 0.02
VSX1-204ENST00000409958 LINC00305Q7Z4B0 112 aa15.19■□□□□ 0.02
VSX1-204ENST00000409958 TMEM37Q8WXS4 190 aa15.19■□□□□ 0.02
VSX1-204ENST00000409958 HLA-DRB4X5D2U9 266 aa15.19■□□□□ 0.02
VSX1-204ENST00000409958 GIG44P09565 113 aaPredicted RBP15.18■□□□□ 0.02
VSX1-204ENST00000409958 CXCL3P19876 107 aa15.18■□□□□ 0.02
VSX1-204ENST00000409958 RGS21Q2M5E4 152 aa15.18■□□□□ 0.02
VSX1-204ENST00000409958 C10orf113Q5VZT2 155 aa15.18■□□□□ 0.02
VSX1-204ENST00000409958 FOXI2Q6ZQN5 318 aa15.18■□□□□ 0.02
VSX1-204ENST00000409958 OR1L4Q8NGR5 311 aa15.18■□□□□ 0.02
VSX1-204ENST00000409958 MED28Q9H204 178 aa15.18■□□□□ 0.02
VSX1-204ENST00000409958 DNAJC4Q9NNZ3 241 aa15.18■□□□□ 0.02
VSX1-204ENST00000409958 SLC39A9Q9NUM3 307 aa15.18■□□□□ 0.02
VSX1-204ENST00000409958 B2MP61769 119 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 SAV1Q9H4B6 383 aaPredicted RBP15.17■□□□□ 0.02
VSX1-204ENST00000409958 MBD2Q9UBB5 411 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 A0A087X0K7 114 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 NUTF2P61970 127 aaKnown RBP15.17■□□□□ 0.02
VSX1-204ENST00000409958 CLINT1Q14677 625 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 FCN2Q15485 313 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 CASC10Q5T4H9 136 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 SPATA31B1PQ5VZV4 182 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 IL17DQ8TAD2 202 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 PFDN5Q99471 154 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 RARRES2Q99969 163 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 NPCDR1Q9BY65 106 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 RPRMQ9NS64 109 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 PXMP4Q9Y6I8 212 aa15.17■□□□□ 0.02
VSX1-204ENST00000409958 MRPS12O15235 138 aaKnown RBP15.16■□□□□ 0.02
VSX1-204ENST00000409958 C4BPBP20851 252 aa15.16■□□□□ 0.02
VSX1-204ENST00000409958 DEFB1P60022 68 aa15.16■□□□□ 0.02
VSX1-204ENST00000409958 FGL1Q08830 312 aa15.16■□□□□ 0.02
VSX1-204ENST00000409958 GDF5OSQ5U4N7 250 aa15.16■□□□□ 0.02
VSX1-204ENST00000409958 OR11H7Q8NGC8 314 aa15.16■□□□□ 0.02
VSX1-204ENST00000409958 THAP6Q8TBB0 222 aa15.16■□□□□ 0.02
VSX1-204ENST00000409958 C20orf173Q96LM9 149 aa15.16■□□□□ 0.02
VSX1-204ENST00000409958 CLUHP3Q96NS8 147 aa15.16■□□□□ 0.02
VSX1-204ENST00000409958 HSPB11Q9Y547 144 aa15.16■□□□□ 0.02
VSX1-204ENST00000409958 TRAV8-2A0A0B4J237 113 aa15.15■□□□□ 0.02
VSX1-204ENST00000409958 A0A0J9YWU9 116 aa15.15■□□□□ 0.02
VSX1-204ENST00000409958 RPL12P30050 165 aaKnown RBP15.15■□□□□ 0.02
VSX1-204ENST00000409958 ZFAND6Q6FIF0 208 aa15.15■□□□□ 0.02
VSX1-204ENST00000409958 EBLN2Q6P2I7 272 aa15.15■□□□□ 0.02
VSX1-204ENST00000409958 BPIFA4PQ86YQ2 179 aa15.15■□□□□ 0.02
VSX1-204ENST00000409958 OR11H2Q8NH07 326 aa15.15■□□□□ 0.02
VSX1-204ENST00000409958 OXA1LQ15070 435 aa15.14■□□□□ 0.01
VSX1-204ENST00000409958 MORN5Q5VZ52 161 aa15.14■□□□□ 0.01
VSX1-204ENST00000409958 ATP5SQ99766 215 aa15.14■□□□□ 0.01
VSX1-204ENST00000409958 C1QTNF4Q9BXJ3 329 aa15.14■□□□□ 0.01
VSX1-204ENST00000409958 WDR61Q9GZS3 305 aaKnown RBP15.14■□□□□ 0.01
VSX1-204ENST00000409958 KMT2CQ8NEZ4 4911 aaKnown RBP15.13■□□□□ 0.01
VSX1-204ENST00000409958 CXCL2P19875 107 aa15.13■□□□□ 0.01
VSX1-204ENST00000409958 ASB13Q8WXK3 278 aa15.13■□□□□ 0.01
VSX1-204ENST00000409958 KCNIP2Q9NS61 270 aa15.13■□□□□ 0.01
VSX1-204ENST00000409958 A0A0J9YX75 114 aa15.12■□□□□ 0.01
VSX1-204ENST00000409958 F6UB75 175 aa15.12■□□□□ 0.01
VSX1-204ENST00000409958 IGFL4Q6B9Z1 124 aa15.12■□□□□ 0.01
VSX1-204ENST00000409958 ZNF709Q8N972 641 aa15.12■□□□□ 0.01
VSX1-204ENST00000409958 CSNK1G2-AS1Q8NCQ2 148 aa15.12■□□□□ 0.01
VSX1-204ENST00000409958 LRRC20Q8TCA0 184 aa15.12■□□□□ 0.01
VSX1-204ENST00000409958 CSMD3Q7Z407 3707 aa15.11■□□□□ 0.01
VSX1-204ENST00000409958 STARD9Q9P2P6 4700 aa15.11■□□□□ 0.01
VSX1-204ENST00000409958 FAM78BQ5VT40 261 aa15.11■□□□□ 0.01
VSX1-204ENST00000409958 LCN15Q6UWW0 184 aa15.11■□□□□ 0.01
VSX1-204ENST00000409958 RNF182Q8N6D2 247 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms