RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 B5MCH6 92 aa10.7□□□□□ -0.7
COL6A3-206ENST00000409809 TCRAP04437 139 aa10.7□□□□□ -0.7
COL6A3-206ENST00000409809 EIF4EBP2Q13542 120 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-206ENST00000409809 ITLN1Q8WWA0 313 aa10.7□□□□□ -0.7
COL6A3-206ENST00000409809 C5orf67F2Z3F1 127 aa10.7□□□□□ -0.7
COL6A3-206ENST00000409809 PDLIM4P50479 330 aa10.7□□□□□ -0.7
COL6A3-206ENST00000409809 SUPT4H1P63272 117 aaKnown RBP10.69□□□□□ -0.7
COL6A3-206ENST00000409809 WIPF2Q8TF74 440 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-206ENST00000409809 C2CD4DB7Z1M9 353 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 NBR2O15453 112 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 FOXG1P55316 489 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-206ENST00000409809 Q6ZVH6 145 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 ZIC4Q8N9L1 334 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 RNF166Q96A37 237 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-206ENST00000409809 FBXL7Q9UJT9 491 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 SPSB3Q6PJ21 355 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 PEBP1P30086 187 aaKnown RBP10.69□□□□□ -0.7
COL6A3-206ENST00000409809 TIMM23O14925 209 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 SMIM10L1P0DMW3 83 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 TEN1Q86WV5 123 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 SMIM10Q96HG1 83 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 COL11A2P13942 1736 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-206ENST00000409809 ADARB2-AS1A8MUL3 147 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 SPEM2Q0P670 501 aa10.69□□□□□ -0.7
COL6A3-206ENST00000409809 SYNJ2BPP57105 145 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 TMEM171Q8WVE6 324 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 CDKN1AP38936 164 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 PLXNA4Q9HCM2 1894 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 IGHV1-45A0A0A0MS14 117 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 ADAMTS9Q9P2N4 1935 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 SMIM27A0A1W2PRY6 76 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 DEFB123Q8N688 67 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 ZNF106Q9H2Y7 1883 aaKnown RBP10.68□□□□□ -0.7
COL6A3-206ENST00000409809 SAA2-SAA4A0A096LPE2 208 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 A0A1W2PRD5 423 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 A0A1W2PRF3 423 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 A0A1W2PRM7 423 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 NPYP01303 97 aa10.68□□□□□ -0.7
COL6A3-206ENST00000409809 SAA2P0DJI9 122 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-206ENST00000409809 CCL8P80075 99 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 TMEM158Q8WZ71 300 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 HAX1O00165 279 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 TRGV3P03979 118 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 TANC1Q9C0D5 1861 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 EGR2P11161 476 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-206ENST00000409809 ZNF138P52744 262 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 GNG5P63218 68 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 MST1P26927 711 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 PRSS12P56730 875 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 PRSS46E5RG02 174 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 PFN1P07737 140 aaKnown RBP10.67□□□□□ -0.7
COL6A3-206ENST00000409809 NUP210Q8TEM1 1887 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-206ENST00000409809 HGFACQ04756 655 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 ERCC8Q13216 396 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 Q6ZWC4 215 aa10.67□□□□□ -0.7
COL6A3-206ENST00000409809 IGHV5-10-1A0A0J9YXX1 117 aa10.66□□□□□ -0.7
COL6A3-206ENST00000409809 ATP5EP56381 51 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-206ENST00000409809 NLRC5Q86WI3 1866 aa10.66□□□□□ -0.7
COL6A3-206ENST00000409809 C9orf139Q6ZV77 190 aa10.66□□□□□ -0.7
COL6A3-206ENST00000409809 GPHA2Q96T91 129 aa10.66□□□□□ -0.7
COL6A3-206ENST00000409809 F8VRH5 84 aa10.66□□□□□ -0.7
COL6A3-206ENST00000409809 IGKV3OR2-268A0A0C4DH90 116 aa10.66□□□□□ -0.7
COL6A3-206ENST00000409809 H3BTX0 84 aa10.66□□□□□ -0.7
COL6A3-206ENST00000409809 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-206ENST00000409809 SIGLEC15Q6ZMC9 328 aa10.66□□□□□ -0.7
COL6A3-206ENST00000409809 A0A1W2PPI3 338 aa10.66□□□□□ -0.7
COL6A3-206ENST00000409809 FGF6P10767 208 aa10.66□□□□□ -0.7
COL6A3-206ENST00000409809 Q8N8P6 123 aa10.65□□□□□ -0.7
COL6A3-206ENST00000409809 SS18L2Q9UHA2 77 aa10.65□□□□□ -0.7
COL6A3-206ENST00000409809 PEAR1Q5VY43 1037 aaPredicted RBP10.65□□□□□ -0.7
COL6A3-206ENST00000409809 PRADC1Q9BSG0 188 aa10.65□□□□□ -0.7
COL6A3-206ENST00000409809 TRGV2A0A075B6R0 118 aa10.65□□□□□ -0.7
COL6A3-206ENST00000409809 C15orf53Q8NAA6 179 aa10.65□□□□□ -0.7
COL6A3-206ENST00000409809 RFNGQ9Y644 331 aa10.65□□□□□ -0.7
COL6A3-206ENST00000409809 HAPLN4Q86UW8 402 aa10.65□□□□□ -0.71
COL6A3-206ENST00000409809 ZNF114Q8NC26 417 aa10.65□□□□□ -0.71
COL6A3-206ENST00000409809 IGFBPL1Q8WX77 278 aa10.65□□□□□ -0.71
COL6A3-206ENST00000409809 HLA-DRB4P13762 266 aa10.65□□□□□ -0.71
COL6A3-206ENST00000409809 LYZL1Q6UWQ5 148 aa10.65□□□□□ -0.71
COL6A3-206ENST00000409809 MAFAQ8NHW3 353 aaPredicted RBP10.65□□□□□ -0.71
COL6A3-206ENST00000409809 HLA-DRB4X5D2U9 266 aa10.65□□□□□ -0.71
COL6A3-206ENST00000409809 C1QL2Q7Z5L3 287 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 FAM90A27PA6NNH2 459 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 AGFG2O95081 481 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 CRYBA2P53672 197 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 CDCP2Q5VXM1 449 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 C16orf47Q6ZP98 133 aaPredicted RBP10.64□□□□□ -0.71
COL6A3-206ENST00000409809 ZNF501Q96CX3 271 aaPredicted RBP10.64□□□□□ -0.71
COL6A3-206ENST00000409809 DSCAML1Q8TD84 2053 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 IGHV1OR15-9A0A0B4J2B8 117 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 CRYBA4P53673 196 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 KLF5Q13887 457 aaPredicted RBP10.64□□□□□ -0.71
COL6A3-206ENST00000409809 NAA38Q9BRA0 125 aaKnown RBP10.64□□□□□ -0.71
COL6A3-206ENST00000409809 IL9P15248 144 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 STPG4Q8N801 248 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 LINC01587Q99440 93 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 RHODO00212 210 aa10.64□□□□□ -0.71
COL6A3-206ENST00000409809 MRPL55Q7Z7F7 128 aaKnown RBP10.64□□□□□ -0.71
COL6A3-206ENST00000409809 PRSS47A8MTI9 375 aa10.63□□□□□ -0.71
COL6A3-206ENST00000409809 FOXI2Q6ZQN5 318 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms