RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 TRAV6A0A075B6T7 132 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 H3BRN7 92 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 HYPMO75409 117 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 DEDDO75618 318 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 CCNKO75909 580 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 OR5G3P0C626 314 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 LINC00869P0C866 280 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 FXYD7P58549 80 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 PLP1P60201 277 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 ZNF705AQ6ZN79 300 aaPredicted RBP9.67□□□□□ -0.86
VCX3A-202ENST00000398729 S100A7AQ86SG5 101 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 NEU1Q99519 415 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 SCRT1Q9BWW7 348 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 SLC25A39Q9BZJ4 359 aaPredicted RBP9.67□□□□□ -0.86
VCX3A-202ENST00000398729 NUDT15Q9NV35 164 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 HIGD1AQ9Y241 93 aa9.67□□□□□ -0.86
VCX3A-202ENST00000398729 TRAV10A0A0B4J240 114 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 A0A0J9YX75 114 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 SMIM9A6NGZ8 99 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 ZNF705FA8MVS1 300 aaPredicted RBP9.66□□□□□ -0.86
VCX3A-202ENST00000398729 FAM25EA8MYX2 175 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 IGLL5B9A064 214 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 F6UB75 175 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 L7N2F9 121 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 CCSO14618 274 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 MBPP02686 304 aaPredicted RBP9.66□□□□□ -0.86
VCX3A-202ENST00000398729 ZNF705DP0CH99 300 aaPredicted RBP9.66□□□□□ -0.86
VCX3A-202ENST00000398729 ZNF705BP0CI00 300 aaPredicted RBP9.66□□□□□ -0.86
VCX3A-202ENST00000398729 RPL7P18124 248 aaKnown RBP9.66□□□□□ -0.86
VCX3A-202ENST00000398729 VAMP2P63027 116 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 PSG9Q00887 426 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 FAM78BQ5VT40 261 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 TEPPQ6URK8 271 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 LINC00299Q6ZSB3 139 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 Q6ZTC4 211 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 ZNF709Q8N972 641 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 ZNF431Q8TF32 576 aaPredicted RBP9.66□□□□□ -0.86
VCX3A-202ENST00000398729 C20orf173Q96LM9 149 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 SHANK2-AS3Q9BTD1 123 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 SLC35B3Q9H1N7 401 aa9.66□□□□□ -0.86
VCX3A-202ENST00000398729 IGHV3OR16-12A0A075B7B8 117 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 C7orf66A4D0T2 115 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 C5orf51A6NDU8 294 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 K7EPK0 472 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 FGL1Q08830 312 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 SLC38A11Q08AI6 406 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 C17orf77Q96MU5 243 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 SEC22CQ9BRL7 303 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 GGACTQ9BVM4 153 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 ARL6Q9H0F7 186 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 CELA1Q9UNI1 258 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 RNF24Q9Y225 148 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 GOLT1BQ9Y3E0 138 aa9.65□□□□□ -0.86
VCX3A-202ENST00000398729 DYNC1H1Q14204 4646 aaKnown RBP9.64□□□□□ -0.87
VCX3A-202ENST00000398729 FAM240BA0A1B0GVZ2 78 aa9.64□□□□□ -0.87
VCX3A-202ENST00000398729 TMEM189A5PLL7 270 aa9.64□□□□□ -0.87
VCX3A-202ENST00000398729 GOSR2O14653 212 aa9.64□□□□□ -0.87
VCX3A-202ENST00000398729 H2AFB2P0C5Z0 115 aa9.64□□□□□ -0.87
VCX3A-202ENST00000398729 ARL16Q0P5N6 197 aa9.64□□□□□ -0.87
VCX3A-202ENST00000398729 C12orf74Q32Q52 190 aa9.64□□□□□ -0.87
VCX3A-202ENST00000398729 PXDC1Q5TGL8 231 aa9.64□□□□□ -0.87
VCX3A-202ENST00000398729 ZNF546Q86UE3 836 aa9.64□□□□□ -0.87
VCX3A-202ENST00000398729 C12orf45Q8N5I9 185 aaPredicted RBP9.64□□□□□ -0.87
VCX3A-202ENST00000398729 S100ZQ8WXG8 99 aa9.64□□□□□ -0.87
VCX3A-202ENST00000398729 UHRF2Q96PU4 802 aa9.64□□□□□ -0.87
VCX3A-202ENST00000398729 APLNQ9ULZ1 77 aa9.64□□□□□ -0.87
VCX3A-202ENST00000398729 LSM5Q9Y4Y9 91 aaKnown RBP9.64□□□□□ -0.87
VCX3A-202ENST00000398729 DUSP14O95147 198 aaKnown RBP9.63□□□□□ -0.87
VCX3A-202ENST00000398729 BCAP31P51572 246 aa9.63□□□□□ -0.87
VCX3A-202ENST00000398729 MZT2BQ6NZ67 158 aa9.63□□□□□ -0.87
VCX3A-202ENST00000398729 C2orf50Q96LR7 162 aa9.63□□□□□ -0.87
VCX3A-202ENST00000398729 ARV1Q9H2C2 271 aa9.63□□□□□ -0.87
VCX3A-202ENST00000398729 RFNGQ9Y644 331 aa9.63□□□□□ -0.87
VCX3A-202ENST00000398729 IGHV4-4A0A075B6R2 117 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 A0A087X0K7 114 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 DEFB131BA0A096LNP1 70 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 TRAV8-2A0A0B4J237 113 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 A8MTW9 85 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 AGPAT2O15120 278 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 HBE1P02100 147 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 AMBPP02760 352 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 SPART-AS1P0CW21 52 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 PVALBP20472 110 aaPredicted RBP9.62□□□□□ -0.87
VCX3A-202ENST00000398729 CAV2P51636 162 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 EMP1P54849 157 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 IGFL4Q6B9Z1 124 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 ZNF767PQ75MW2 155 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 RNF182Q8N6D2 247 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 ZNF738Q8NE65 137 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 RNF126Q9BV68 326 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 DNAH11Q96DT5 4516 aa9.62□□□□□ -0.87
VCX3A-202ENST00000398729 CNN1P51911 297 aaKnown RBP9.61□□□□□ -0.87
VCX3A-202ENST00000398729 RAB31Q13636 194 aa9.61□□□□□ -0.87
VCX3A-202ENST00000398729 AMTNQ6UX39 209 aa9.61□□□□□ -0.87
VCX3A-202ENST00000398729 PATE2Q6UY27 113 aa9.61□□□□□ -0.87
VCX3A-202ENST00000398729 C1orf158Q8N1D5 194 aa9.61□□□□□ -0.87
VCX3A-202ENST00000398729 LRRC20Q8TCA0 184 aa9.61□□□□□ -0.87
VCX3A-202ENST00000398729 IGF2BP2-AS1Q96M15 143 aa9.61□□□□□ -0.87
VCX3A-202ENST00000398729 TMEM208Q9BTX3 173 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms