RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 AKR1C1Q04828 323 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 TMEM41BQ5BJD5 291 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 C11orf44Q8N8P7 122 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 AURKAIP1Q9NWT8 199 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-202ENST00000394943 S4R3C0 116 aa5.22□□□□□ -1.57
LIMA1-202ENST00000394943 FHITP49789 147 aa5.21□□□□□ -1.57
LIMA1-202ENST00000394943 EIF5AP63241 154 aaKnown RBP5.21□□□□□ -1.57
LIMA1-202ENST00000394943 SLC51BQ86UW2 128 aa5.21□□□□□ -1.57
LIMA1-202ENST00000394943 FXYD5Q96DB9 178 aa5.21□□□□□ -1.57
LIMA1-202ENST00000394943 LINC00467Q9BRT7 94 aa5.21□□□□□ -1.57
LIMA1-202ENST00000394943 PRELID1Q9Y255 219 aa5.21□□□□□ -1.57
LIMA1-202ENST00000394943 BORCS7-ASMTA0A0B4J1R7 106 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 RBAKDNA6NC62 111 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 IFNA5P01569 189 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 ZNF726P1Q15940 193 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 MIC13Q5XKP0 118 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 RPL7L1Q6DKI1 246 aaKnown RBP5.21□□□□□ -1.58
LIMA1-202ENST00000394943 SIGLEC15Q6ZMC9 328 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 WFDC3Q8IUB2 231 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 TMEM61Q8N0U2 210 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 TMED6Q8WW62 240 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 OR5B12Q96R08 314 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 MS4A6AQ9H2W1 248 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 TP53TG3Q9ULZ0 132 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 IZUMO1RA6ND01 250 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 SMLR1H3BR10 107 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 ISLRO14498 428 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 RPL7P18124 248 aaKnown RBP5.21□□□□□ -1.58
LIMA1-202ENST00000394943 SULT1A2P50226 295 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 ACOT6Q3I5F7 207 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-202ENST00000394943 LRRC37A5PQ49AS3 106 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 MORN5Q5VZ52 161 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 SLC50A1Q9BRV3 221 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 NRN1Q9NPD7 142 aa5.21□□□□□ -1.58
LIMA1-202ENST00000394943 KIR2DL5BA0A0G2JN68 375 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 KIR2DL5BA0A0G2JPC4 375 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 SMCO3A2RU48 225 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 NDUFB4O95168 129 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 IGHV3-48P01763 117 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 CD300CQ08708 224 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 ODF3L2Q3SX64 289 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 C10orf113Q5VZT2 155 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 KIR2DL5AQ8N109 375 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 RPP25LQ8N5L8 163 aaKnown RBP5.2□□□□□ -1.58
LIMA1-202ENST00000394943 KIR2DL5BQ8NHK3 375 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 SETD2Q9BYW2 2564 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-202ENST00000394943 TRBV19A0A075B6N1 114 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 K7EIL1 84 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 SLC25A5P05141 298 aaKnown RBP5.2□□□□□ -1.58
LIMA1-202ENST00000394943 KHDC3LQ587J8 217 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 CCDC28AQ8IWP9 274 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 TMEM217Q8N7C4 229 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 ZNF331Q9NQX6 463 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-202ENST00000394943 HIST1H1EP10412 219 aaKnown RBP5.2□□□□□ -1.58
LIMA1-202ENST00000394943 TCF24Q7RTU0 167 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 LINC00305Q7Z4B0 112 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 BAP18Q8IXM2 172 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 TP53TG1Q9Y2A0 90 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 DNAH6Q9C0G6 4158 aa5.2□□□□□ -1.58
LIMA1-202ENST00000394943 FXYD6-FXYD2A0A087WZ82 144 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 OR4C46A6NHA9 309 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 ARPC5O15511 151 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 NMBP08949 121 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 LCN15Q6UWW0 184 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 PQLC2Q6ZP29 291 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 Q6ZRG5 221 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 TRPT1Q86TN4 253 aaKnown RBP5.19□□□□□ -1.58
LIMA1-202ENST00000394943 CITED4Q96RK1 184 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 RSG1Q9BU20 258 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 SAV1Q9H4B6 383 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-202ENST00000394943 MAP6D1Q9H9H5 199 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 FBN3Q75N90 2809 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 SAP30O75446 220 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 TPT1P13693 172 aaKnown RBP5.19□□□□□ -1.58
LIMA1-202ENST00000394943 RHOBP62745 196 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 SCGB1C1Q8TD33 95 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 NARS2Q96I59 477 aaKnown RBP5.19□□□□□ -1.58
LIMA1-202ENST00000394943 SCRT1Q9BWW7 348 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 ZNF586Q9NXT0 402 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 CTXND1A0A1B0GTU2 59 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 C4BPBP20851 252 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 GATA2P23769 480 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-202ENST00000394943 KHDC1LQ5JSQ8 128 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 AMTNQ6UX39 209 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 BPIFA4PQ86YQ2 179 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 TM2D3Q9BRN9 247 aa5.19□□□□□ -1.58
LIMA1-202ENST00000394943 NPIPB6E9PJ23 425 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 UBE2CO00762 179 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 GALR1P47211 349 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 LYZP61626 148 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 CLINT1Q14677 625 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 ZFP69Q49AA0 526 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 FFAR4Q5NUL3 377 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 FOXI2Q6ZQN5 318 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 SSX7Q7RTT5 188 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 SH3BGRL3Q9H299 93 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 SERTM2A0A1B0GWG4 89 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 FBLL1A6NHQ2 334 aaKnown RBP5.18□□□□□ -1.58
LIMA1-202ENST00000394943 COX7A2P2O60397 106 aa5.18□□□□□ -1.58
LIMA1-202ENST00000394943 HLA-DRB4P13762 266 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms