RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 CHD3Q12873 2000 aaKnown RBP6.61□□□□□ -1.35
LIMS1-203ENST00000393310 VWC2LB2RUY7 222 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 GGTLC3B5MD39 225 aa6.61□□□□□ -1.35
LIMS1-203ENST00000393310 NDUFV3P56181 108 aaKnown RBP6.61□□□□□ -1.35
LIMS1-203ENST00000393310 ISG20L2Q9H9L3 353 aaKnown RBP6.61□□□□□ -1.35
LIMS1-203ENST00000393310 MRPL27Q9P0M9 148 aaKnown RBP6.61□□□□□ -1.35
LIMS1-203ENST00000393310 SNURFLB1AK76 121 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 H0YL77 283 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 OVOL1O14753 267 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 BGLAPP02818 100 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 IBA57Q5T440 356 aaKnown RBP6.6□□□□□ -1.35
LIMS1-203ENST00000393310 TEX36Q5VZQ5 186 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 ACP7Q6ZNF0 438 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 DRAM1Q8N682 238 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 STPG3Q8N7X2 389 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 MZB1Q8WU39 189 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 PROK2Q9HC23 129 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 TRAV27A0A087WT01 109 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 TIAL1Q01085 375 aaKnown RBP eCLIP6.6□□□□□ -1.35
LIMS1-203ENST00000393310 LCNL1Q6ZST4 164 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 DEFB125Q8N687 156 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 PDCD1LG2Q9BQ51 273 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 NRN1Q9NPD7 142 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 V9GY05 133 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 TNRC6AQ8NDV7 1962 aaKnown RBP6.6□□□□□ -1.35
LIMS1-203ENST00000393310 IGHV2-26A0A0B4J1V2 119 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 SLC17A2O00624 439 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 BUB3O43684 328 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 NXPH3O95157 252 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 CDAP32320 146 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 LY6G6FQ5SQ64 297 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 ABHD12Q8N2K0 398 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 CYB561D1Q8N8Q1 229 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 SDR39U1Q9NRG7 319 aaPredicted RBP6.6□□□□□ -1.35
LIMS1-203ENST00000393310 LYRM9A8MSI8 78 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 CRYGBP07316 175 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 GPX2P18283 190 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 DAPP51397 102 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 PLEKHA3Q9HB20 300 aa6.6□□□□□ -1.35
LIMS1-203ENST00000393310 A0A087X0K7 114 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 UBE2L6O14933 153 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 FGF16O43320 207 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 LPAR6P43657 344 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 Q6YL49 198 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 KIR2DL5BQ8NHK3 375 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 B9D1Q9UPM9 204 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 SHANK1Q9Y566 2161 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 ANKRD17O75179 2603 aaKnown RBP6.59□□□□□ -1.35
LIMS1-203ENST00000393310 A0A1W2PPI3 338 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 PSG2P11465 335 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 SAA4P35542 130 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 HSPE1P61604 102 aaKnown RBP6.59□□□□□ -1.35
LIMS1-203ENST00000393310 UNC119Q13432 240 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 KDM4DQ6B0I6 523 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 C11orf71Q6IPW1 123 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 TEX43Q6ZNM6 134 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 Q6ZVH6 145 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 NXT2Q9NPJ8 142 aaKnown RBP6.59□□□□□ -1.35
LIMS1-203ENST00000393310 ZNF319Q9P2F9 582 aa6.59□□□□□ -1.35
LIMS1-203ENST00000393310 UBE2L5PA0A1B0GUS4 154 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 IGLC7A0M8Q6 106 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 F6UB75 175 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 IGKV1D-16P01601 117 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 ASIPP42127 132 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 DLX1P56177 255 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 PSG7Q13046 419 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 KIR3DS1Q14943 382 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 PRIMA1Q86XR5 153 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 OSR2Q8N2R0 312 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 C10orf111Q8N326 155 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 SLC25A37Q9NYZ2 338 aa6.59□□□□□ -1.36
LIMS1-203ENST00000393310 IGLV3-9A0A075B6K5 115 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 KNCNA6PVL3 124 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 NMUP48645 174 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 RNF138Q8WVD3 245 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 PNRC2Q9NPJ4 139 aaKnown RBP6.58□□□□□ -1.36
LIMS1-203ENST00000393310 C3orf85A0A1B0GTC6 90 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 A0A1W2PS18 150 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 NPIPB6E9PJ23 425 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 CXCL1P09341 107 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 NPC2P61916 151 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 SNRPGP62308 76 aaKnown RBP6.58□□□□□ -1.36
LIMS1-203ENST00000393310 GNB1P62873 340 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 GATAD1Q8WUU5 269 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 C1orf159Q96HA4 380 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 C4orf51C9J302 202 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 PYYP10082 97 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 EWSR1Q01844 656 aaKnown RBP eCLIP6.58□□□□□ -1.36
LIMS1-203ENST00000393310 TIGITQ495A1 244 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 S100A7L2Q5SY68 101 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 SLC25A47Q6Q0C1 308 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 OR10G8Q8NGN5 311 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 PRELID3AQ96N28 172 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 TMEM59Q9BXS4 323 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 FBXL7Q9UJT9 491 aa6.58□□□□□ -1.36
LIMS1-203ENST00000393310 SDCBPO00560 298 aaPredicted RBP6.57□□□□□ -1.36
LIMS1-203ENST00000393310 LEPROTL1O95214 131 aa6.57□□□□□ -1.36
LIMS1-203ENST00000393310 CD8AP01732 235 aa6.57□□□□□ -1.36
LIMS1-203ENST00000393310 ADCYAP1P18509 176 aa6.57□□□□□ -1.36
LIMS1-203ENST00000393310 SSBP1Q04837 148 aaKnown RBP6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms