RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ELOA3CA0A087WX78 387 aaPredicted RBP7.94□□□□□ -1.14
VPS53-202ENST00000389040 IGHV3-21A0A0B4J1V1 117 aa7.94□□□□□ -1.14
VPS53-202ENST00000389040 GGTLC3B5MD39 225 aa7.94□□□□□ -1.14
VPS53-202ENST00000389040 C9JCJ5 164 aa7.94□□□□□ -1.14
VPS53-202ENST00000389040 H3BUA1 57 aa7.94□□□□□ -1.14
VPS53-202ENST00000389040 ELANEP08246 267 aa7.94□□□□□ -1.14
VPS53-202ENST00000389040 KCNIP4Q6PIL6 250 aa7.94□□□□□ -1.14
VPS53-202ENST00000389040 RNF152Q8N8N0 203 aa7.94□□□□□ -1.14
VPS53-202ENST00000389040 SFRP2Q96HF1 295 aa7.94□□□□□ -1.14
VPS53-202ENST00000389040 CITED1Q99966 193 aa7.94□□□□□ -1.14
VPS53-202ENST00000389040 LY96Q9Y6Y9 160 aa7.94□□□□□ -1.14
VPS53-202ENST00000389040 COL6A5A8TX70 2615 aa7.94□□□□□ -1.14
VPS53-202ENST00000389040 TRAV41A0A0B4J266 112 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 A0A1W2PPQ1 181 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HIST1H2BKO60814 126 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 GGCTO75223 188 aaKnown RBP7.93□□□□□ -1.14
VPS53-202ENST00000389040 IGHG4P01861 327 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HIST1H2BJP06899 126 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HIST1H2BOP23527 126 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HIST1H2BBP33778 126 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HIST1H2BDP58876 126 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HIST1H2BCP62807 126 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 CFHR3Q02985 330 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 FOXE3Q13461 319 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HIST2H2BEQ16778 126 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.93□□□□□ -1.14
VPS53-202ENST00000389040 LINC00305Q7Z4B0 112 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 OCC1Q8TAD7 63 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HIST1H2BHQ93079 126 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 IMMP2LQ96T52 175 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HIST1H2BNQ99877 126 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HIST1H2BMQ99879 126 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 PAXXQ9BUH6 204 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 SRD5A3Q9H8P0 318 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 HELTA6NFD8 242 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 PPP5D1E7EU14 171 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 I3L2K1 104 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 PHOX2AO14813 284 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 ATP6V0E1O15342 81 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 PYYP10082 97 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 ORM2P19652 201 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 CRYBB3P26998 211 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 PPIFP30405 207 aaKnown RBP7.93□□□□□ -1.14
VPS53-202ENST00000389040 C19orf54Q5BKX5 351 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 OR1B1Q8NGR6 318 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 OR51M1Q9H341 326 aa7.93□□□□□ -1.14
VPS53-202ENST00000389040 SH2D7A6NKC9 451 aaPredicted RBP7.92□□□□□ -1.14
VPS53-202ENST00000389040 LINC01548A6NM66 108 aa7.92□□□□□ -1.14
VPS53-202ENST00000389040 K7EN84 100 aa7.92□□□□□ -1.14
VPS53-202ENST00000389040 HYPMO75409 117 aa7.92□□□□□ -1.14
VPS53-202ENST00000389040 IGLV1-40P01703 118 aa7.92□□□□□ -1.14
VPS53-202ENST00000389040 S100A8P05109 93 aa7.92□□□□□ -1.14
VPS53-202ENST00000389040 EGR2P11161 476 aaPredicted RBP7.92□□□□□ -1.14
VPS53-202ENST00000389040 GNG4P50150 75 aa7.92□□□□□ -1.14
VPS53-202ENST00000389040 SUMO1P63165 101 aaKnown RBP7.92□□□□□ -1.14
VPS53-202ENST00000389040 CENPWQ5EE01 88 aa7.92□□□□□ -1.14
VPS53-202ENST00000389040 STXBP6Q8NFX7 210 aa7.92□□□□□ -1.14
VPS53-202ENST00000389040 OR1L6Q8NGR2 347 aa7.92□□□□□ -1.14
VPS53-202ENST00000389040 FRZBQ92765 325 aa7.92□□□□□ -1.14
VPS53-202ENST00000389040 FXYD5Q96DB9 178 aa7.92□□□□□ -1.14
VPS53-202ENST00000389040 ZNF98A6NK75 572 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 TRGC1P0CF51 173 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 IGLC1P0CG04 106 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 MEOX2P50222 304 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 NDUFA6P56556 154 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 FAM3BP58499 235 aaPredicted RBP7.91□□□□□ -1.14
VPS53-202ENST00000389040 PLP1P60201 277 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 NDUFA11Q86Y39 141 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 OR10G8Q8NGN5 311 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 NOL4LQ96MY1 436 aaPredicted RBP7.91□□□□□ -1.14
VPS53-202ENST00000389040 C12orf57Q99622 126 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 FAM103A1Q9BTL3 118 aaKnown RBP7.91□□□□□ -1.14
VPS53-202ENST00000389040 TSSC4Q9Y5U2 329 aaPredicted RBP7.91□□□□□ -1.14
VPS53-202ENST00000389040 K7EIM0 57 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 TYMSP04818 313 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 HOXA5P20719 270 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 PSMB8P28062 276 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 NDPQ00604 133 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 KLK9Q2XQG4 91 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 TMEM95Q3KNT9 176 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 FAM209BQ5JX69 171 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 UNQ5815/PRO19632Q6UWF5 114 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 TTC9CQ8N5M4 171 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 BTF3L4Q96K17 158 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 TCEAL7Q9BRU2 100 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 KLK9Q9UKQ9 250 aa7.91□□□□□ -1.14
VPS53-202ENST00000389040 NPIPB5A8MRT5 1133 aa7.9□□□□□ -1.14
VPS53-202ENST00000389040 PSG1P11464 419 aa7.9□□□□□ -1.14
VPS53-202ENST00000389040 CDX1P47902 265 aaPredicted RBP7.9□□□□□ -1.14
VPS53-202ENST00000389040 ZNF329Q86UD4 541 aa7.9□□□□□ -1.14
VPS53-202ENST00000389040 A0A0G2JLM5 398 aa7.9□□□□□ -1.15
VPS53-202ENST00000389040 M0QZ24 198 aa7.9□□□□□ -1.15
VPS53-202ENST00000389040 SMIM6P0DI80 62 aa7.9□□□□□ -1.15
VPS53-202ENST00000389040 TIGITQ495A1 244 aa7.9□□□□□ -1.15
VPS53-202ENST00000389040 FAM110DQ8TAY7 271 aaPredicted RBP7.9□□□□□ -1.15
VPS53-202ENST00000389040 MYOZ3Q8TDC0 251 aa7.9□□□□□ -1.15
VPS53-202ENST00000389040 USMG5Q96IX5 58 aa7.9□□□□□ -1.15
VPS53-202ENST00000389040 UBE2E2Q96LR5 201 aa7.9□□□□□ -1.15
VPS53-202ENST00000389040 IGF2BP2-AS1Q96M15 143 aa7.9□□□□□ -1.15
VPS53-202ENST00000389040 HIGD1AQ9Y241 93 aa7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms