RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 BLNKQ8WV28 456 aa20.59■□□□□ 0.89
MSX1-201ENST00000382723 IGHV3OR16-13A0A075B7E8 117 aa20.58■□□□□ 0.88
MSX1-201ENST00000382723 IGHV3-49A0A0A0MS15 119 aa20.58■□□□□ 0.88
MSX1-201ENST00000382723 IGHV3-74A0A0B4J1X5 117 aa20.58■□□□□ 0.88
MSX1-201ENST00000382723 F8W036 122 aa20.58■□□□□ 0.88
MSX1-201ENST00000382723 H3BTX0 84 aa20.58■□□□□ 0.88
MSX1-201ENST00000382723 ADCYAP1P18509 176 aa20.58■□□□□ 0.88
MSX1-201ENST00000382723 BPIFA4PQ86YQ2 179 aa20.58■□□□□ 0.88
MSX1-201ENST00000382723 IGHV3-66A0A0C4DH42 116 aa20.57■□□□□ 0.88
MSX1-201ENST00000382723 NPPCP23582 126 aa20.57■□□□□ 0.88
MSX1-201ENST00000382723 CYB561D1Q8N8Q1 229 aa20.57■□□□□ 0.88
MSX1-201ENST00000382723 TMEM14CQ9P0S9 112 aa20.57■□□□□ 0.88
MSX1-201ENST00000382723 RNF114Q9Y508 228 aa20.57■□□□□ 0.88
MSX1-201ENST00000382723 APOHP02749 345 aaPredicted RBP20.57■□□□□ 0.88
MSX1-201ENST00000382723 CDX1P47902 265 aaPredicted RBP20.57■□□□□ 0.88
MSX1-201ENST00000382723 RPEL1Q2QD12 228 aa20.57■□□□□ 0.88
MSX1-201ENST00000382723 IGHV4OR15-8A0A075B7B6 117 aa20.56■□□□□ 0.88
MSX1-201ENST00000382723 A0A087WW49 117 aa20.56■□□□□ 0.88
MSX1-201ENST00000382723 NBEAP1P0C6P0 100 aa20.56■□□□□ 0.88
MSX1-201ENST00000382723 CD28P10747 220 aa20.56■□□□□ 0.88
MSX1-201ENST00000382723 S100A7P31151 101 aa20.56■□□□□ 0.88
MSX1-201ENST00000382723 DEFB136Q30KP8 78 aa20.55■□□□□ 0.88
MSX1-201ENST00000382723 OR8I2Q8N0Y5 310 aa20.55■□□□□ 0.88
MSX1-201ENST00000382723 H3BQ15 152 aa20.55■□□□□ 0.88
MSX1-201ENST00000382723 CRYBB3P26998 211 aa20.55■□□□□ 0.88
MSX1-201ENST00000382723 FAM106AQ4KMX7 169 aa20.55■□□□□ 0.88
MSX1-201ENST00000382723 OR4F17Q8NGA8 305 aa20.55■□□□□ 0.88
MSX1-201ENST00000382723 TMEM190Q8WZ59 177 aa20.55■□□□□ 0.88
MSX1-201ENST00000382723 C4orf3Q8WVX3 66 aa20.54■□□□□ 0.88
MSX1-201ENST00000382723 BUB3O43684 328 aa20.53■□□□□ 0.88
MSX1-201ENST00000382723 KLHL30-AS1Q8NEE0 82 aa20.53■□□□□ 0.88
MSX1-201ENST00000382723 ZNF586Q9NXT0 402 aa20.53■□□□□ 0.88
MSX1-201ENST00000382723 MRPS12O15235 138 aaKnown RBP20.53■□□□□ 0.88
MSX1-201ENST00000382723 APOC3P02656 99 aa20.53■□□□□ 0.88
MSX1-201ENST00000382723 HIST1H1EP10412 219 aaKnown RBP20.53■□□□□ 0.88
MSX1-201ENST00000382723 RANP62826 216 aaKnown RBP20.53■□□□□ 0.88
MSX1-201ENST00000382723 GPHB5Q86YW7 130 aa20.53■□□□□ 0.88
MSX1-201ENST00000382723 SEC11CQ9BY50 192 aa20.53■□□□□ 0.88
MSX1-201ENST00000382723 RNF24Q9Y225 148 aa20.53■□□□□ 0.88
MSX1-201ENST00000382723 ARL2-SNX15V9GYD0 113 aa20.53■□□□□ 0.88
MSX1-201ENST00000382723 A0A1W2PRE2 83 aa20.52■□□□□ 0.88
MSX1-201ENST00000382723 TM4SF20Q53R12 229 aa20.52■□□□□ 0.88
MSX1-201ENST00000382723 SOHLH1Q5JUK2 328 aa20.52■□□□□ 0.88
MSX1-201ENST00000382723 A0A1W2PRX2 142 aa20.51■□□□□ 0.87
MSX1-201ENST00000382723 GGTLC3B5MD39 225 aa20.51■□□□□ 0.87
MSX1-201ENST00000382723 RPL7P18124 248 aaKnown RBP20.51■□□□□ 0.87
MSX1-201ENST00000382723 SUMO1P63165 101 aaKnown RBP20.51■□□□□ 0.87
MSX1-201ENST00000382723 C17orf77Q96MU5 243 aa20.51■□□□□ 0.87
MSX1-201ENST00000382723 IGLC2P0DOY2 106 aa20.51■□□□□ 0.87
MSX1-201ENST00000382723 HOXD3P31249 432 aaPredicted RBP20.51■□□□□ 0.87
MSX1-201ENST00000382723 CITED2Q99967 270 aaPredicted RBP20.51■□□□□ 0.87
MSX1-201ENST00000382723 TXNDC17Q9BRA2 123 aa20.51■□□□□ 0.87
MSX1-201ENST00000382723 U3KQE9 123 aa20.51■□□□□ 0.87
MSX1-201ENST00000382723 PDE6DO43924 150 aa20.5■□□□□ 0.87
MSX1-201ENST00000382723 SCO1O75880 301 aa20.5■□□□□ 0.87
MSX1-201ENST00000382723 PROK1P58294 105 aa20.5■□□□□ 0.87
MSX1-201ENST00000382723 DUX3Q96PT4 197 aa20.5■□□□□ 0.87
MSX1-201ENST00000382723 OR11H1Q8NG94 326 aa20.49■□□□□ 0.87
MSX1-201ENST00000382723 DAZ1Q9NQZ3 744 aaKnown RBP20.49■□□□□ 0.87
MSX1-201ENST00000382723 SYNJ2BPP57105 145 aa20.49■□□□□ 0.87
MSX1-201ENST00000382723 C10orf91Q5T1B1 145 aa20.49■□□□□ 0.87
MSX1-201ENST00000382723 C8orf86Q6ZUL3 223 aa20.49■□□□□ 0.87
MSX1-201ENST00000382723 RPUSD4Q96CM3 377 aaKnown RBP20.49■□□□□ 0.87
MSX1-201ENST00000382723 SMAD5-AS1Q9Y6J3 95 aa20.49■□□□□ 0.87
MSX1-201ENST00000382723 TRBV19A0A075B6N1 114 aa20.48■□□□□ 0.87
MSX1-201ENST00000382723 SCO2A0A1W2PP80 73 aa20.48■□□□□ 0.87
MSX1-201ENST00000382723 TMEM250H0YL14 139 aa20.48■□□□□ 0.87
MSX1-201ENST00000382723 FAM90A2PQ658T7 463 aa20.48■□□□□ 0.87
MSX1-201ENST00000382723 F6UZH7 168 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 ZNF674Q2M3X9 581 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 C1orf194Q5T5A4 169 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 OR1N2Q8NGR9 330 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 DPF1Q92782 380 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 CARHSP1Q9Y2V2 147 aaKnown RBP20.47■□□□□ 0.87
MSX1-201ENST00000382723 LINC01619G3V211 115 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 ATF4P18848 351 aaPredicted RBP20.47■□□□□ 0.87
MSX1-201ENST00000382723 EDN2P20800 178 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 SLURP1P55000 103 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 GUCA2BQ16661 112 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 ELOVL1Q9BW60 279 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 Q9H3A6 140 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 UFC1Q9Y3C8 167 aa20.47■□□□□ 0.87
MSX1-201ENST00000382723 NDUFB4O95168 129 aa20.46■□□□□ 0.87
MSX1-201ENST00000382723 TSSC4Q9Y5U2 329 aaPredicted RBP20.46■□□□□ 0.87
MSX1-201ENST00000382723 IGHV7-4-1A0A0J9YVY3 117 aa20.45■□□□□ 0.86
MSX1-201ENST00000382723 PGPA6NDG6 321 aa20.45■□□□□ 0.86
MSX1-201ENST00000382723 SLC17A3O00476 420 aa20.45■□□□□ 0.86
MSX1-201ENST00000382723 GPR82Q96P67 336 aa20.45■□□□□ 0.86
MSX1-201ENST00000382723 NKX6-2Q9C056 277 aaPredicted RBP20.45■□□□□ 0.86
MSX1-201ENST00000382723 ZNF785A8K8V0 405 aa20.45■□□□□ 0.86
MSX1-201ENST00000382723 K7EMT4 169 aa20.45■□□□□ 0.86
MSX1-201ENST00000382723 GALR1P47211 349 aa20.45■□□□□ 0.86
MSX1-201ENST00000382723 C16orf54Q6UWD8 224 aa20.45■□□□□ 0.86
MSX1-201ENST00000382723 EXOC3-AS1Q8N2X6 119 aa20.45■□□□□ 0.86
MSX1-201ENST00000382723 WFDC12Q8WWY7 111 aa20.45■□□□□ 0.86
MSX1-201ENST00000382723 PARLQ9H300 379 aa20.45■□□□□ 0.86
MSX1-201ENST00000382723 DERL1Q9BUN8 251 aa20.44■□□□□ 0.86
MSX1-201ENST00000382723 RHPN1-AS1Q9BWJ2 59 aa20.44■□□□□ 0.86
MSX1-201ENST00000382723 NDUFS6O75380 124 aaKnown RBP20.43■□□□□ 0.86
MSX1-201ENST00000382723 MYCNOSP40205 109 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms