RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 SMIM10Q96HG1 83 aa10.35□□□□□ -0.75
VPS13A-204ENST00000376634 TPTE2P1Q5T6R2 138 aa10.35□□□□□ -0.75
VPS13A-204ENST00000376634 TMEM8BA6NDV4 472 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 WFDC12Q8WWY7 111 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 C1QTNF4Q9BXJ3 329 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 RPL36AP83881 106 aaKnown RBP10.34□□□□□ -0.75
VPS13A-204ENST00000376634 SPRED2Q7Z698 418 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 RPL36ALQ969Q0 106 aaKnown RBP10.34□□□□□ -0.75
VPS13A-204ENST00000376634 ANAPC10Q9UM13 185 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 CEACAM8P31997 349 aaPredicted RBP10.34□□□□□ -0.75
VPS13A-204ENST00000376634 CD55P08174 381 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 PRCDQ00LT1 54 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 TRBV6-7A0A0A0MS04 114 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 NPIPB5A8MRT5 1133 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 CCL3L1P16619 93 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 LHX2P50458 406 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 IFITM2Q01629 132 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 PPIFP30405 207 aaKnown RBP10.34□□□□□ -0.75
VPS13A-204ENST00000376634 C11orf44Q8N8P7 122 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 TIMM23O14925 209 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 SS18Q15532 418 aa10.34□□□□□ -0.75
VPS13A-204ENST00000376634 D6R8Y8 96 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 CCL1P22362 96 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 C9orf153Q5TBE3 101 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 SPSB3Q6PJ21 355 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 RASL11AQ6T310 242 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 ACTL10Q5JWF8 245 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 RSPO3Q9BXY4 272 aaPredicted RBP10.33□□□□□ -0.76
VPS13A-204ENST00000376634 TMEM219Q86XT9 240 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 MRPS18CQ9Y3D5 142 aaKnown RBP10.33□□□□□ -0.76
VPS13A-204ENST00000376634 DEFB121Q5J5C9 76 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 CD5LO43866 347 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 C1QTNF9P0C862 333 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 VMO1Q7Z5L0 202 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 HIST1H2BLQ99880 126 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 DEPPQ9NTK1 212 aa10.33□□□□□ -0.76
VPS13A-204ENST00000376634 C6orf226Q5I0X4 101 aa10.32□□□□□ -0.76
VPS13A-204ENST00000376634 TIMM21Q9BVV7 248 aa10.32□□□□□ -0.76
VPS13A-204ENST00000376634 LINC00271P0C7V0 271 aa10.32□□□□□ -0.76
VPS13A-204ENST00000376634 KLF17Q5JT82 389 aaPredicted RBP10.32□□□□□ -0.76
VPS13A-204ENST00000376634 H3BMM0 161 aa10.32□□□□□ -0.76
VPS13A-204ENST00000376634 TIMP3P35625 211 aa10.32□□□□□ -0.76
VPS13A-204ENST00000376634 SELLP14151 372 aa10.32□□□□□ -0.76
VPS13A-204ENST00000376634 CT83Q5H943 113 aa10.32□□□□□ -0.76
VPS13A-204ENST00000376634 C9orf106Q8NAJ2 232 aa10.32□□□□□ -0.76
VPS13A-204ENST00000376634 SLC25A39Q9BZJ4 359 aaPredicted RBP10.32□□□□□ -0.76
VPS13A-204ENST00000376634 ZNF474Q6S9Z5 364 aaPredicted RBP10.32□□□□□ -0.76
VPS13A-204ENST00000376634 BCL6BQ8N143 479 aaPredicted RBP10.32□□□□□ -0.76
VPS13A-204ENST00000376634 TNFSF13O75888 250 aa10.32□□□□□ -0.76
VPS13A-204ENST00000376634 HIVEP3Q5T1R4 2406 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 TRAV8-3A0A0A6YYJ7 113 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 OR9G9P0C7N8 305 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 TNFRSF14Q92956 283 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 LOC102723996A0A087X1L8 192 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 GUSBP1Q15486 140 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 EXOC3-AS1Q8N2X6 119 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 C1orf159Q96HA4 380 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 ZFHX2Q9C0A1 2572 aaPredicted RBP10.31□□□□□ -0.76
VPS13A-204ENST00000376634 MYMXA0A1B0GTQ4 84 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 SRSF7Q16629 238 aaKnown RBP eCLIP10.31□□□□□ -0.76
VPS13A-204ENST00000376634 SNHG12Q9BXW3 62 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 VCYO14598 125 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 C1QL4Q86Z23 238 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 PMS2P5A8MQ11 134 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 INAFM2P0DMQ5 153 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 KIR3DS1Q14943 382 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 DUTP33316 252 aaKnown RBP10.31□□□□□ -0.76
VPS13A-204ENST00000376634 ZNF625Q96I27 306 aaPredicted RBP10.31□□□□□ -0.76
VPS13A-204ENST00000376634 PLSCR4Q9NRQ2 329 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 IGHV2-26A0A0B4J1V2 119 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 EPOPA6NHQ4 379 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 CHAC1Q9BUX1 264 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 RNF114Q9Y508 228 aa10.31□□□□□ -0.76
VPS13A-204ENST00000376634 KLHL30-AS1Q8NEE0 82 aa10.3□□□□□ -0.76
VPS13A-204ENST00000376634 RAI1Q7Z5J4 1906 aaPredicted RBP10.3□□□□□ -0.76
VPS13A-204ENST00000376634 TRGV9Q99603 122 aa10.3□□□□□ -0.76
VPS13A-204ENST00000376634 LSM4Q9Y4Z0 139 aaKnown RBP10.3□□□□□ -0.76
VPS13A-204ENST00000376634 A0A087X0K7 114 aa10.3□□□□□ -0.76
VPS13A-204ENST00000376634 NCR2O95944 276 aa10.3□□□□□ -0.76
VPS13A-204ENST00000376634 FAM166AQ6J272 317 aa10.3□□□□□ -0.76
VPS13A-204ENST00000376634 CSTL1Q9H114 145 aa10.3□□□□□ -0.76
VPS13A-204ENST00000376634 C20orf204Q6ZNR8 217 aa10.3□□□□□ -0.76
VPS13A-204ENST00000376634 UBE2WQ96B02 151 aa10.3□□□□□ -0.76
VPS13A-204ENST00000376634 TEX38Q6PEX7 206 aa10.3□□□□□ -0.76
VPS13A-204ENST00000376634 USMG5Q96IX5 58 aa10.3□□□□□ -0.76
VPS13A-204ENST00000376634 GAGE12BA1L429 117 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 HEPN1Q6WQI6 88 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 NKAPP1Q8N9T2 125 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 ZNF114Q8NC26 417 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 ZNF138P52744 262 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 TMEM242Q9NWH2 141 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 TLN2Q9Y4G6 2542 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 ADAMTSL5Q6ZMM2 481 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 EREGO14944 169 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 CRIM1Q9NZV1 1036 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 IGKV1D-13A0A0B4J2D9 117 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 IGKV1-13P0DP09 117 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 OCC1Q8TAD7 63 aa10.29□□□□□ -0.76
VPS13A-204ENST00000376634 FAM223BA6NKX1 122 aa10.28□□□□□ -0.76
VPS13A-204ENST00000376634 FAM223AQ8IWN6 122 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 221.2 ms