RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TMEM155Q4W5P6 130 aa13.02□□□□□ -0.32
SDC4-201ENST00000372733 SRSF12Q8WXF0 261 aaKnown RBP13.02□□□□□ -0.32
SDC4-201ENST00000372733 ADGRG4Q8IZF6 3080 aa13.02□□□□□ -0.33
SDC4-201ENST00000372733 IGLC1P0CG04 106 aa13.02□□□□□ -0.33
SDC4-201ENST00000372733 DEFB125Q8N687 156 aa13.02□□□□□ -0.33
SDC4-201ENST00000372733 TEX45Q8NA69 505 aa13.02□□□□□ -0.33
SDC4-201ENST00000372733 HSPB8Q9UJY1 196 aa13.02□□□□□ -0.33
SDC4-201ENST00000372733 RNF24Q9Y225 148 aa13.02□□□□□ -0.33
SDC4-201ENST00000372733 CDKN1BP46527 198 aa13.01□□□□□ -0.33
SDC4-201ENST00000372733 RHOGP84095 191 aa13.01□□□□□ -0.33
SDC4-201ENST00000372733 C16orf54Q6UWD8 224 aa13.01□□□□□ -0.33
SDC4-201ENST00000372733 NEU4Q8WWR8 484 aaPredicted RBP13.01□□□□□ -0.33
SDC4-201ENST00000372733 C17orf77Q96MU5 243 aa13.01□□□□□ -0.33
SDC4-201ENST00000372733 SIGLEC9Q9Y336 463 aa13.01□□□□□ -0.33
SDC4-201ENST00000372733 F11RQ9Y624 299 aaKnown RBP13.01□□□□□ -0.33
SDC4-201ENST00000372733 CNOT1A5YKK6 2376 aaKnown RBP13.01□□□□□ -0.33
SDC4-201ENST00000372733 KALRNO60229 2985 aa13.01□□□□□ -0.33
SDC4-201ENST00000372733 A0A1B0GUT8 65 aa13.01□□□□□ -0.33
SDC4-201ENST00000372733 TEX22C9J3V5 150 aa13.01□□□□□ -0.33
SDC4-201ENST00000372733 TNFRSF13BO14836 293 aaPredicted RBP13.01□□□□□ -0.33
SDC4-201ENST00000372733 PRSS33Q8NF86 280 aa13.01□□□□□ -0.33
SDC4-201ENST00000372733 K7EM74 188 aa13□□□□□ -0.33
SDC4-201ENST00000372733 NCR2O95944 276 aa13□□□□□ -0.33
SDC4-201ENST00000372733 HLA-DRB1P01911 266 aa13□□□□□ -0.33
SDC4-201ENST00000372733 CRYGBP07316 175 aa13□□□□□ -0.33
SDC4-201ENST00000372733 ARF6P62330 175 aa13□□□□□ -0.33
SDC4-201ENST00000372733 LINC01545Q5VT33 79 aa13□□□□□ -0.33
SDC4-201ENST00000372733 C12orf54Q6X4T0 127 aa13□□□□□ -0.33
SDC4-201ENST00000372733 TPPP3Q9BW30 176 aa13□□□□□ -0.33
SDC4-201ENST00000372733 SNAI2O43623 268 aa13□□□□□ -0.33
SDC4-201ENST00000372733 RBP4P02753 201 aa13□□□□□ -0.33
SDC4-201ENST00000372733 HOXB4P17483 251 aaPredicted RBP13□□□□□ -0.33
SDC4-201ENST00000372733 PIP4P1Q86T03 277 aa13□□□□□ -0.33
SDC4-201ENST00000372733 TMEM133Q9H2Q1 129 aa13□□□□□ -0.33
SDC4-201ENST00000372733 AP5S1Q9NUS5 200 aa13□□□□□ -0.33
SDC4-201ENST00000372733 AMMECR1LQ6DCA0 310 aa12.99□□□□□ -0.33
SDC4-201ENST00000372733 ZZEF1O43149 2961 aa12.99□□□□□ -0.33
SDC4-201ENST00000372733 MALRD1Q5VYJ5 2156 aa12.99□□□□□ -0.33
SDC4-201ENST00000372733 FBXL15Q9H469 300 aa12.99□□□□□ -0.33
SDC4-201ENST00000372733 TMEM14CQ9P0S9 112 aa12.99□□□□□ -0.33
SDC4-201ENST00000372733 HIST1H1AQ02539 215 aaPredicted RBP12.98□□□□□ -0.33
SDC4-201ENST00000372733 LDLRAD2Q5SZI1 272 aa12.98□□□□□ -0.33
SDC4-201ENST00000372733 RASL11BQ9BPW5 248 aa12.98□□□□□ -0.33
SDC4-201ENST00000372733 MS4A6AQ9H2W1 248 aa12.98□□□□□ -0.33
SDC4-201ENST00000372733 THBDP07204 575 aa12.98□□□□□ -0.33
SDC4-201ENST00000372733 Q6ZS92 163 aa12.98□□□□□ -0.33
SDC4-201ENST00000372733 C2orf91Q6ZV80 131 aa12.98□□□□□ -0.33
SDC4-201ENST00000372733 PPP1R27Q86WC6 154 aa12.98□□□□□ -0.33
SDC4-201ENST00000372733 ZNF747Q9BV97 191 aa12.98□□□□□ -0.33
SDC4-201ENST00000372733 C16orf97H3BN30 126 aa12.97□□□□□ -0.33
SDC4-201ENST00000372733 KLK10O43240 276 aa12.97□□□□□ -0.33
SDC4-201ENST00000372733 IGKV1-17P01599 117 aa12.97□□□□□ -0.33
SDC4-201ENST00000372733 FAM106CPP0CH98 169 aa12.97□□□□□ -0.33
SDC4-201ENST00000372733 RIGQ13278 110 aa12.97□□□□□ -0.33
SDC4-201ENST00000372733 FAM106AQ4KMX7 169 aa12.97□□□□□ -0.33
SDC4-201ENST00000372733 I3L2K1 104 aa12.97□□□□□ -0.33
SDC4-201ENST00000372733 PSG9Q00887 426 aa12.97□□□□□ -0.33
SDC4-201ENST00000372733 FA2HQ7L5A8 372 aa12.97□□□□□ -0.33
SDC4-201ENST00000372733 FAM57AQ8TBR7 257 aa12.97□□□□□ -0.33
SDC4-201ENST00000372733 NGBQ9NPG2 151 aa12.97□□□□□ -0.33
SDC4-201ENST00000372733 CUL9Q8IWT3 2517 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 TRBV19A0A075B6N1 114 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 IGHV1-3A0A0C4DH29 117 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 A0A0G2JNJ9 132 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 GPR183P32249 361 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 LOXL1Q08397 574 aaPredicted RBP12.96□□□□□ -0.33
SDC4-201ENST00000372733 SAPCD1Q5SSQ6 148 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 Q9UFV3 132 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 CRIP1P50238 77 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 PAX2Q02962 417 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 IGFL3Q6UXB1 125 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 PRSS3P2Q8NHM4 247 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 CST9LQ9H4G1 147 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 SH3BGRL2Q9UJC5 107 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 PSG8Q9UQ74 426 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 INSIG2Q9Y5U4 225 aa12.96□□□□□ -0.33
SDC4-201ENST00000372733 PCNX1Q96RV3 2341 aa12.96□□□□□ -0.34
SDC4-201ENST00000372733 TRAV8-6A0A0B4J262 113 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 M0R3E3 92 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 COX8AP10176 69 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 COX7A1P24310 79 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 RBPJQ06330 500 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 ANKRD39Q53RE8 183 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 SIGLEC15Q6ZMC9 328 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 ASCL5Q7RTU5 278 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 TMEM75Q8N9X5 138 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 OR10AG1Q8NH19 301 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 SCNM1Q9BWG6 230 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 DYNLRB1Q9NP97 96 aa12.95□□□□□ -0.34
SDC4-201ENST00000372733 TRBV6-1A0A0K0K1D8 114 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 CD5LO43866 347 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 IGLV1-47P01700 117 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 IFI27P40305 119 aaPredicted RBP12.94□□□□□ -0.34
SDC4-201ENST00000372733 OR8A1Q8NGG7 326 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 RNASE6Q93091 150 aaKnown RBP12.94□□□□□ -0.34
SDC4-201ENST00000372733 C8orf49Q96NF6 230 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 SHANK2-AS3Q9BTD1 123 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 OTOGLQ3ZCN5 2332 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 TMSB15BA0A087X1C1 80 aa12.94□□□□□ -0.34
SDC4-201ENST00000372733 A0A096LNJ9 63 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms