RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 RLFQ13129 1914 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 VWC2Q2TAL6 325 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 NAA38Q9BRA0 125 aaKnown RBP8.36□□□□□ -1.07
CLIP1-202ENST00000358808 TRBV6-7A0A0A0MS04 114 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 MBD3L4A6NDZ8 208 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-202ENST00000358808 MBD3L3A6NE82 208 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-202ENST00000358808 MBD3L5A6NJ08 208 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-202ENST00000358808 IGHV1-8P0DP01 117 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 EFNB3Q15768 340 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 FAM90A2PQ658T7 463 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 TMEM200BQ69YZ2 307 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 MBD3L2Q8NHZ7 208 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-202ENST00000358808 RTBDNQ9BSG5 229 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-202ENST00000358808 LINC01619G3V211 115 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 Q8TAT8 98 aa8.36□□□□□ -1.07
CLIP1-202ENST00000358808 SCN2AQ99250 2005 aa8.35□□□□□ -1.07
CLIP1-202ENST00000358808 KNCNA6PVL3 124 aa8.35□□□□□ -1.07
CLIP1-202ENST00000358808 NXPH4O95158 308 aa8.35□□□□□ -1.07
CLIP1-202ENST00000358808 Q96MF0 132 aa8.35□□□□□ -1.07
CLIP1-202ENST00000358808 PAX9P55771 341 aa8.35□□□□□ -1.07
CLIP1-202ENST00000358808 HAMPP81172 84 aa8.35□□□□□ -1.07
CLIP1-202ENST00000358808 C10orf55Q5SWW7 151 aa8.35□□□□□ -1.07
CLIP1-202ENST00000358808 MCRIP2Q9BUT9 160 aaKnown RBP8.35□□□□□ -1.07
CLIP1-202ENST00000358808 NDUFS8O00217 210 aa8.35□□□□□ -1.07
CLIP1-202ENST00000358808 BCL6BQ8N143 479 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-202ENST00000358808 TMEM170AQ8WVE7 144 aa8.35□□□□□ -1.07
CLIP1-202ENST00000358808 C18orf12Q96KH6 178 aa8.35□□□□□ -1.07
CLIP1-202ENST00000358808 SCRT2Q9NQ03 307 aa8.35□□□□□ -1.07
CLIP1-202ENST00000358808 ARHGEF17Q96PE2 2063 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-202ENST00000358808 LINC01559Q495D7 138 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 MAPK1IP1LQ8NDC0 245 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 WBP1Q96G27 269 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 GNB1LQ9BYB4 327 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 A0A087WWC5 75 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 A0A096LPF7 62 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 GAGE12BA1L429 117 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 CRLF1O75462 422 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 GAGE7O76087 117 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 GAGE12FP0CL80 117 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 GAGE12GP0CL81 117 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 GAGE12IP0CL82 117 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 CARHSP1Q9Y2V2 147 aaKnown RBP8.34□□□□□ -1.07
CLIP1-202ENST00000358808 SDK2Q58EX2 2172 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 A0A1B0GWJ7 208 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 AZU1P20160 251 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 DUTP33316 252 aaKnown RBP8.34□□□□□ -1.07
CLIP1-202ENST00000358808 ZFP36L1Q07352 338 aaKnown RBP8.34□□□□□ -1.07
CLIP1-202ENST00000358808 OCC1Q8TAD7 63 aa8.34□□□□□ -1.07
CLIP1-202ENST00000358808 IGKV1D-13A0A0B4J2D9 117 aa8.34□□□□□ -1.08
CLIP1-202ENST00000358808 PRSS29PA6NIE9 313 aa8.34□□□□□ -1.08
CLIP1-202ENST00000358808 OOSP1A8MZH6 123 aa8.34□□□□□ -1.08
CLIP1-202ENST00000358808 OVOL3O00110 214 aa8.34□□□□□ -1.08
CLIP1-202ENST00000358808 IGKV1-13P0DP09 117 aa8.34□□□□□ -1.08
CLIP1-202ENST00000358808 FOXF2Q12947 444 aa8.34□□□□□ -1.08
CLIP1-202ENST00000358808 GAGE6Q13070 117 aa8.34□□□□□ -1.08
CLIP1-202ENST00000358808 KLF17Q5JT82 389 aaPredicted RBP8.34□□□□□ -1.08
CLIP1-202ENST00000358808 NDUFAF3Q9BU61 184 aa8.34□□□□□ -1.08
CLIP1-202ENST00000358808 LINC00271P0C7V0 271 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 CACNA1EQ15878 2313 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 DKK1O94907 266 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 TRPT1Q86TN4 253 aaKnown RBP8.33□□□□□ -1.08
CLIP1-202ENST00000358808 RPUSD1Q9UJJ7 312 aaKnown RBP8.33□□□□□ -1.08
CLIP1-202ENST00000358808 PIKFYVEQ9Y2I7 2098 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 M0R1W7 72 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 C5orf47Q569G3 176 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 RUSC1-AS1Q66K80 236 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 DSCR8Q96T75 97 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 DAZ1Q9NQZ3 744 aaKnown RBP8.33□□□□□ -1.08
CLIP1-202ENST00000358808 LCTP09848 1927 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 PATJQ8NI35 1801 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 TANC1Q9C0D5 1861 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 IGKV1OR2-108A0A075B7D4 117 aa8.33□□□□□ -1.08
CLIP1-202ENST00000358808 SLC25A48Q6ZT89 311 aaKnown RBP8.33□□□□□ -1.08
CLIP1-202ENST00000358808 TDRD6O60522 2096 aaKnown RBP8.33□□□□□ -1.08
CLIP1-202ENST00000358808 IGKV2D-24A0A075B6R9 120 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 TMEM158Q8WZ71 300 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 TMEM178BH3BS89 294 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 AMBPP02760 352 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 DEFB105AQ8NG35 78 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 HEATR5BQ9P2D3 2071 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 RNF222A6NCQ9 220 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 FAM90A9PA6NNJ1 464 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 UBL5Q9BZL1 73 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 LIME1Q9H400 295 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 ZNF319Q9P2F9 582 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 TRIOBPQ9H2D6 2365 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 C9JAW5 83 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 TGFBR3LH3BV60 316 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 C5orf64Q2M2E5 130 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 CHAC1Q9BUX1 264 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 BPESC1Q9GZL8 116 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 CSRP3P50461 194 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 GUSBP1Q15486 140 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 CACNA1GO43497 2377 aa8.32□□□□□ -1.08
CLIP1-202ENST00000358808 TRAV12-1A0A0B4J245 112 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 NTN3O00634 580 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-202ENST00000358808 PSG3Q16557 428 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 KLK9Q9UKQ9 250 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 TIMP3P35625 211 aa8.31□□□□□ -1.08
CLIP1-202ENST00000358808 MST1LQ2TV78 715 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms