RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 CT83Q5H943 113 aa17.85■□□□□ 0.45
TRIM28-202ENST00000341753 IGF2-ASQ6U949 168 aa17.85■□□□□ 0.45
TRIM28-202ENST00000341753 PET117Q6UWS5 81 aa17.85■□□□□ 0.45
TRIM28-202ENST00000341753 INS-IGF2F8WCM5 200 aa17.84■□□□□ 0.45
TRIM28-202ENST00000341753 HLA-DRB1P01911 266 aa17.84■□□□□ 0.45
TRIM28-202ENST00000341753 CNTFRP26992 372 aa17.84■□□□□ 0.45
TRIM28-202ENST00000341753 GPR183P32249 361 aa17.84■□□□□ 0.45
TRIM28-202ENST00000341753 LYZP61626 148 aa17.84■□□□□ 0.45
TRIM28-202ENST00000341753 SOX21Q9Y651 276 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-202ENST00000341753 FAM106CPP0CH98 169 aa17.83■□□□□ 0.45
TRIM28-202ENST00000341753 FAM106AQ4KMX7 169 aa17.83■□□□□ 0.45
TRIM28-202ENST00000341753 NEU4Q8WWR8 484 aaPredicted RBP17.83■□□□□ 0.45
TRIM28-202ENST00000341753 SRSF12Q8WXF0 261 aaKnown RBP17.83■□□□□ 0.45
TRIM28-202ENST00000341753 SMIM12Q96EX1 92 aa17.83■□□□□ 0.45
TRIM28-202ENST00000341753 PPIAL4DF5H284 164 aa17.83■□□□□ 0.44
TRIM28-202ENST00000341753 MRGPRG-AS1Q2M3A8 158 aa17.83■□□□□ 0.44
TRIM28-202ENST00000341753 HSPB8Q9UJY1 196 aa17.83■□□□□ 0.44
TRIM28-202ENST00000341753 POLEQ07864 2286 aa17.82■□□□□ 0.44
TRIM28-202ENST00000341753 HIST1H1AQ02539 215 aaPredicted RBP17.82■□□□□ 0.44
TRIM28-202ENST00000341753 C2orf91Q6ZV80 131 aa17.82■□□□□ 0.44
TRIM28-202ENST00000341753 LYPD2Q6UXB3 125 aa17.82■□□□□ 0.44
TRIM28-202ENST00000341753 NAA38Q9BRA0 125 aaKnown RBP17.82■□□□□ 0.44
TRIM28-202ENST00000341753 CUL9Q8IWT3 2517 aa17.82■□□□□ 0.44
TRIM28-202ENST00000341753 PPBPP02775 128 aa17.81■□□□□ 0.44
TRIM28-202ENST00000341753 WFDC8Q8IUA0 241 aa17.81■□□□□ 0.44
TRIM28-202ENST00000341753 GFRA4Q9GZZ7 299 aa17.81■□□□□ 0.44
TRIM28-202ENST00000341753 GAGE12BA1L429 117 aa17.81■□□□□ 0.44
TRIM28-202ENST00000341753 CD40P25942 277 aa17.81■□□□□ 0.44
TRIM28-202ENST00000341753 FXYD7P58549 80 aa17.81■□□□□ 0.44
TRIM28-202ENST00000341753 VMA21Q3ZAQ7 101 aa17.81■□□□□ 0.44
TRIM28-202ENST00000341753 TEX36Q5VZQ5 186 aa17.81■□□□□ 0.44
TRIM28-202ENST00000341753 OR4A5Q8NH83 315 aa17.81■□□□□ 0.44
TRIM28-202ENST00000341753 ZNF785A8K8V0 405 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 CD5LO43866 347 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 IGLV2-11P01706 119 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 LINC01545Q5VT33 79 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 TMEM116Q8NCL8 245 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 ABHD17AQ96GS6 310 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 C17orf77Q96MU5 243 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 TRGV9Q99603 122 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 AP5S1Q9NUS5 200 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 LOC389332A0A1B0GUA5 103 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 C7orf71A4D174 169 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 OVOL3O00110 214 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 HAX1O00165 279 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 TMEM30BQ3MIR4 351 aa17.8■□□□□ 0.44
TRIM28-202ENST00000341753 NPIPB6E9PJ23 425 aa17.79■□□□□ 0.44
TRIM28-202ENST00000341753 CRYGCP07315 174 aa17.79■□□□□ 0.44
TRIM28-202ENST00000341753 LOXL1Q08397 574 aaPredicted RBP17.79■□□□□ 0.44
TRIM28-202ENST00000341753 OR8A1Q8NGG7 326 aa17.79■□□□□ 0.44
TRIM28-202ENST00000341753 C8orf46Q8TAG6 207 aa17.79■□□□□ 0.44
TRIM28-202ENST00000341753 FAM57AQ8TBR7 257 aa17.79■□□□□ 0.44
TRIM28-202ENST00000341753 A0A0G2JNJ9 132 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 TNFRSF1AP19438 455 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 BPIFA4PQ86YQ2 179 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 PRSS3P2Q8NHM4 247 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 CCL17Q92583 94 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 ZNF747Q9BV97 191 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 MS4A6AQ9H2W1 248 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 Q9UFV3 132 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 HIGD1AQ9Y241 93 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 A0A1B0GUT8 65 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 COX8AP10176 69 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 ZZEF1O43149 2961 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 TLN1Q9Y490 2541 aaKnown RBP17.78■□□□□ 0.44
TRIM28-202ENST00000341753 FA2HQ7L5A8 372 aa17.78■□□□□ 0.44
TRIM28-202ENST00000341753 SAP30O75446 220 aa17.77■□□□□ 0.44
TRIM28-202ENST00000341753 PRR30Q53SZ7 412 aaPredicted RBP17.77■□□□□ 0.44
TRIM28-202ENST00000341753 TMEM186Q96B77 213 aa17.77■□□□□ 0.44
TRIM28-202ENST00000341753 RPL27AP46776 148 aaKnown RBP17.77■□□□□ 0.43
TRIM28-202ENST00000341753 IFI27P40305 119 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-202ENST00000341753 MEF2CQ06413 473 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-202ENST00000341753 OTORQ9NRC9 128 aa17.76■□□□□ 0.43
TRIM28-202ENST00000341753 PEF1Q9UBV8 284 aaKnown RBP17.76■□□□□ 0.43
TRIM28-202ENST00000341753 TACC2O95359 2948 aa17.76■□□□□ 0.43
TRIM28-202ENST00000341753 FAM231BA6NCW3 169 aa17.76■□□□□ 0.43
TRIM28-202ENST00000341753 RBP4P02753 201 aa17.76■□□□□ 0.43
TRIM28-202ENST00000341753 SLC25A39Q9BZJ4 359 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-202ENST00000341753 HILPDAQ9Y5L2 63 aa17.76■□□□□ 0.43
TRIM28-202ENST00000341753 TMSB15BA0A087X1C1 80 aa17.75■□□□□ 0.43
TRIM28-202ENST00000341753 SERTM2A0A1B0GWG4 89 aa17.75■□□□□ 0.43
TRIM28-202ENST00000341753 TMEM97Q5BJF2 176 aa17.75■□□□□ 0.43
TRIM28-202ENST00000341753 NBASA2RRP1 2371 aa17.74■□□□□ 0.43
TRIM28-202ENST00000341753 LRBAP50851 2863 aa17.74■□□□□ 0.43
TRIM28-202ENST00000341753 A0A1W2PRD5 423 aa17.74■□□□□ 0.43
TRIM28-202ENST00000341753 A0A1W2PRF3 423 aa17.74■□□□□ 0.43
TRIM28-202ENST00000341753 A0A1W2PRM7 423 aa17.74■□□□□ 0.43
TRIM28-202ENST00000341753 PIP4P2Q8N4L2 257 aa17.73■□□□□ 0.43
TRIM28-202ENST00000341753 CTSZQ9UBR2 303 aa17.73■□□□□ 0.43
TRIM28-202ENST00000341753 SPTA1P02549 2419 aa17.73■□□□□ 0.43
TRIM28-202ENST00000341753 TPRP12270 2363 aaKnown RBP17.73■□□□□ 0.43
TRIM28-202ENST00000341753 IGLC1P0CG04 106 aa17.73■□□□□ 0.43
TRIM28-202ENST00000341753 RIPPLY3P57055 190 aa17.73■□□□□ 0.43
TRIM28-202ENST00000341753 SMIM15Q7Z3B0 74 aa17.73■□□□□ 0.43
TRIM28-202ENST00000341753 OR10AG1Q8NH19 301 aa17.73■□□□□ 0.43
TRIM28-202ENST00000341753 PPIAL4EA0A075B759 164 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 GAGE10A6NGK3 116 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 PPIAL4FP0DN26 164 aa17.72■□□□□ 0.43
TRIM28-202ENST00000341753 RPS20P60866 119 aaKnown RBP17.72■□□□□ 0.43
TRIM28-202ENST00000341753 BSPH1Q075Z2 132 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 139.5 ms