RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 ZNF343Q6P1L6 599 aa13.41□□□□□ -0.26
CLDN4-201ENST00000340958 KLHDC1Q8N7A1 406 aa13.41□□□□□ -0.26
CLDN4-201ENST00000340958 SHANK2-AS3Q9BTD1 123 aa13.41□□□□□ -0.26
CLDN4-201ENST00000340958 TRBV12-3P01733 135 aa13.4□□□□□ -0.26
CLDN4-201ENST00000340958 SRP19P09132 144 aaKnown RBP13.4□□□□□ -0.26
CLDN4-201ENST00000340958 SOHLH1Q5JUK2 328 aa13.4□□□□□ -0.26
CLDN4-201ENST00000340958 FAM209BQ5JX69 171 aa13.4□□□□□ -0.26
CLDN4-201ENST00000340958 ZNF503Q96F45 646 aa13.4□□□□□ -0.26
CLDN4-201ENST00000340958 PEF1Q9UBV8 284 aaKnown RBP13.4□□□□□ -0.26
CLDN4-201ENST00000340958 RNF24Q9Y225 148 aa13.4□□□□□ -0.26
CLDN4-201ENST00000340958 H3BRN7 92 aa13.39□□□□□ -0.27
CLDN4-201ENST00000340958 SNRPCP09234 159 aaKnown RBP13.39□□□□□ -0.27
CLDN4-201ENST00000340958 KHDC1LQ5JSQ8 128 aa13.39□□□□□ -0.27
CLDN4-201ENST00000340958 CYB561D1Q8N8Q1 229 aa13.39□□□□□ -0.27
CLDN4-201ENST00000340958 BLNKQ8WV28 456 aa13.39□□□□□ -0.27
CLDN4-201ENST00000340958 SAV1Q9H4B6 383 aaPredicted RBP13.39□□□□□ -0.27
CLDN4-201ENST00000340958 MLXQ9UH92 298 aa13.39□□□□□ -0.27
CLDN4-201ENST00000340958 COL6A5A8TX70 2615 aa13.39□□□□□ -0.27
CLDN4-201ENST00000340958 GGCTO75223 188 aaKnown RBP13.39□□□□□ -0.27
CLDN4-201ENST00000340958 BPIFA4PQ86YQ2 179 aa13.39□□□□□ -0.27
CLDN4-201ENST00000340958 METTL26Q96S19 204 aa13.39□□□□□ -0.27
CLDN4-201ENST00000340958 ZNF98A6NK75 572 aa13.38□□□□□ -0.27
CLDN4-201ENST00000340958 TCF21O43680 179 aa13.38□□□□□ -0.27
CLDN4-201ENST00000340958 ATP5G3P48201 142 aa13.38□□□□□ -0.27
CLDN4-201ENST00000340958 CD81P60033 236 aa13.38□□□□□ -0.27
CLDN4-201ENST00000340958 OR4F17Q8NGA8 305 aa13.38□□□□□ -0.27
CLDN4-201ENST00000340958 YTHDF2Q9Y5A9 579 aaKnown RBP13.38□□□□□ -0.27
CLDN4-201ENST00000340958 ZNF320A2RRD8 509 aa13.37□□□□□ -0.27
CLDN4-201ENST00000340958 PDE6DO43924 150 aa13.37□□□□□ -0.27
CLDN4-201ENST00000340958 TXNDC17Q9BRA2 123 aa13.37□□□□□ -0.27
CLDN4-201ENST00000340958 ZFAND3Q9H8U3 227 aa13.37□□□□□ -0.27
CLDN4-201ENST00000340958 ZNF207O43670 478 aaKnown RBP13.36□□□□□ -0.27
CLDN4-201ENST00000340958 NPPCP23582 126 aa13.36□□□□□ -0.27
CLDN4-201ENST00000340958 ZNF674Q2M3X9 581 aa13.36□□□□□ -0.27
CLDN4-201ENST00000340958 OR8I2Q8N0Y5 310 aa13.36□□□□□ -0.27
CLDN4-201ENST00000340958 FXYD5Q96DB9 178 aa13.36□□□□□ -0.27
CLDN4-201ENST00000340958 UBE2E2Q96LR5 201 aa13.36□□□□□ -0.27
CLDN4-201ENST00000340958 NDUFA4O00483 81 aa13.36□□□□□ -0.27
CLDN4-201ENST00000340958 NBEAP1P0C6P0 100 aa13.36□□□□□ -0.27
CLDN4-201ENST00000340958 TMEM14CQ9P0S9 112 aa13.36□□□□□ -0.27
CLDN4-201ENST00000340958 F6UZH7 168 aa13.35□□□□□ -0.27
CLDN4-201ENST00000340958 GP9P14770 177 aa13.35□□□□□ -0.27
CLDN4-201ENST00000340958 RPEL1Q2QD12 228 aa13.35□□□□□ -0.27
CLDN4-201ENST00000340958 RPUSD4Q96CM3 377 aaKnown RBP13.35□□□□□ -0.27
CLDN4-201ENST00000340958 MDFIQ99750 246 aa13.35□□□□□ -0.27
CLDN4-201ENST00000340958 ARL2-SNX15V9GYD0 113 aa13.35□□□□□ -0.27
CLDN4-201ENST00000340958 A0A1W2PRE2 83 aa13.34□□□□□ -0.27
CLDN4-201ENST00000340958 TMEM250H0YL14 139 aa13.34□□□□□ -0.27
CLDN4-201ENST00000340958 H3BTX0 84 aa13.34□□□□□ -0.27
CLDN4-201ENST00000340958 HAX1O00165 279 aa13.34□□□□□ -0.27
CLDN4-201ENST00000340958 LGALS1P09382 135 aaKnown RBP13.34□□□□□ -0.27
CLDN4-201ENST00000340958 RPL7P18124 248 aaKnown RBP13.34□□□□□ -0.27
CLDN4-201ENST00000340958 RANP62826 216 aaKnown RBP13.34□□□□□ -0.27
CLDN4-201ENST00000340958 FAM106AQ4KMX7 169 aa13.34□□□□□ -0.27
CLDN4-201ENST00000340958 BIN3Q9NQY0 253 aa13.34□□□□□ -0.27
CLDN4-201ENST00000340958 IGHV3-66A0A0C4DH42 116 aa13.34□□□□□ -0.27
CLDN4-201ENST00000340958 COLCA2A8K830 154 aa13.34□□□□□ -0.27
CLDN4-201ENST00000340958 HIST1H1EP10412 219 aaKnown RBP13.34□□□□□ -0.27
CLDN4-201ENST00000340958 SUMO1P63165 101 aaKnown RBP13.34□□□□□ -0.27
CLDN4-201ENST00000340958 RNF152Q8N8N0 203 aa13.34□□□□□ -0.27
CLDN4-201ENST00000340958 NIPSNAP3BQ9BS92 247 aa13.34□□□□□ -0.27
CLDN4-201ENST00000340958 IGHV3OR16-13A0A075B7E8 117 aa13.33□□□□□ -0.28
CLDN4-201ENST00000340958 IGHV3-49A0A0A0MS15 119 aa13.33□□□□□ -0.28
CLDN4-201ENST00000340958 IGHV3-74A0A0B4J1X5 117 aa13.33□□□□□ -0.28
CLDN4-201ENST00000340958 ZNF727A8MUV8 499 aa13.33□□□□□ -0.28
CLDN4-201ENST00000340958 FOLR2P14207 255 aa13.33□□□□□ -0.28
CLDN4-201ENST00000340958 CTAG1AP78358 180 aa13.33□□□□□ -0.28
CLDN4-201ENST00000340958 C16orf95Q9H693 158 aa13.33□□□□□ -0.28
CLDN4-201ENST00000340958 KRTAP24-1Q3LI83 254 aa13.32□□□□□ -0.28
CLDN4-201ENST00000340958 UNQ9165/PRO28630Q6UXU0 137 aa13.32□□□□□ -0.28
CLDN4-201ENST00000340958 LINC01006Q8NI28 216 aa13.32□□□□□ -0.28
CLDN4-201ENST00000340958 MYOZ3Q8TDC0 251 aa13.32□□□□□ -0.28
CLDN4-201ENST00000340958 M0R036 132 aa13.32□□□□□ -0.28
CLDN4-201ENST00000340958 SMCO4Q9NRQ5 59 aa13.32□□□□□ -0.28
CLDN4-201ENST00000340958 SCO2A0A1W2PP80 73 aa13.31□□□□□ -0.28
CLDN4-201ENST00000340958 CLPSL1A2RUU4 121 aa13.31□□□□□ -0.28
CLDN4-201ENST00000340958 H3BQ15 152 aa13.31□□□□□ -0.28
CLDN4-201ENST00000340958 NDUFB4O95168 129 aa13.31□□□□□ -0.28
CLDN4-201ENST00000340958 FAM90A2PQ658T7 463 aa13.31□□□□□ -0.28
CLDN4-201ENST00000340958 C11orf44Q8N8P7 122 aa13.31□□□□□ -0.28
CLDN4-201ENST00000340958 ZNF414Q96IQ9 312 aa13.31□□□□□ -0.28
CLDN4-201ENST00000340958 SMIM7Q9BQ49 75 aa13.31□□□□□ -0.28
CLDN4-201ENST00000340958 PARLQ9H300 379 aa13.31□□□□□ -0.28
CLDN4-201ENST00000340958 ZNF586Q9NXT0 402 aa13.31□□□□□ -0.28
CLDN4-201ENST00000340958 PGPA6NDG6 321 aa13.3□□□□□ -0.28
CLDN4-201ENST00000340958 ZNF785A8K8V0 405 aa13.3□□□□□ -0.28
CLDN4-201ENST00000340958 GGTLC3B5MD39 225 aa13.3□□□□□ -0.28
CLDN4-201ENST00000340958 BUB3O43684 328 aa13.3□□□□□ -0.28
CLDN4-201ENST00000340958 NDUFS6O75380 124 aaKnown RBP13.3□□□□□ -0.28
CLDN4-201ENST00000340958 CRYBB3P26998 211 aa13.3□□□□□ -0.28
CLDN4-201ENST00000340958 GALR1P47211 349 aa13.3□□□□□ -0.28
CLDN4-201ENST00000340958 C15orf54Q8N8G6 183 aa13.3□□□□□ -0.28
CLDN4-201ENST00000340958 TMEM190Q8WZ59 177 aa13.3□□□□□ -0.28
CLDN4-201ENST00000340958 GRAMD2BQ96HH9 432 aa13.3□□□□□ -0.28
CLDN4-201ENST00000340958 GPR82Q96P67 336 aa13.3□□□□□ -0.28
CLDN4-201ENST00000340958 Q9H3A6 140 aa13.3□□□□□ -0.28
CLDN4-201ENST00000340958 NDUFA7O95182 113 aa13.29□□□□□ -0.28
CLDN4-201ENST00000340958 APOHP02749 345 aaPredicted RBP13.29□□□□□ -0.28
CLDN4-201ENST00000340958 SLC25A5P05141 298 aaKnown RBP13.29□□□□□ -0.28
CLDN4-201ENST00000340958 CDX1P47902 265 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms