RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 IGKV1D-39P04432 117 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 CD28P10747 220 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 C11orf68Q9H3H3 251 aaKnown RBP10.47□□□□□ -0.73
COL3A1-201ENST00000304636 SLC25A15Q9Y619 301 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 ATXN8Q156A1 80 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 TEX43Q6ZNM6 134 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 AMN1Q8IY45 258 aa10.47□□□□□ -0.73
COL3A1-201ENST00000304636 DUSP14O95147 198 aaKnown RBP10.46□□□□□ -0.73
COL3A1-201ENST00000304636 CSRP1P21291 193 aaKnown RBP10.46□□□□□ -0.73
COL3A1-201ENST00000304636 LMO1P25800 156 aa10.46□□□□□ -0.73
COL3A1-201ENST00000304636 PAX8Q06710 450 aa10.46□□□□□ -0.73
COL3A1-201ENST00000304636 MLANAQ16655 118 aa10.46□□□□□ -0.73
COL3A1-201ENST00000304636 ADAMTSL5Q6ZMM2 481 aa10.46□□□□□ -0.73
COL3A1-201ENST00000304636 SNRNP200O75643 2136 aaKnown RBP10.46□□□□□ -0.74
COL3A1-201ENST00000304636 TRAV12-3A0A0B4J271 114 aa10.46□□□□□ -0.74
COL3A1-201ENST00000304636 M0R2P5 195 aa10.46□□□□□ -0.74
COL3A1-201ENST00000304636 RPL15P61313 204 aaKnown RBP10.46□□□□□ -0.74
COL3A1-201ENST00000304636 FAM231DQ6ZW35 169 aa10.46□□□□□ -0.74
COL3A1-201ENST00000304636 LINC01587Q99440 93 aa10.46□□□□□ -0.74
COL3A1-201ENST00000304636 NPFFR1Q9GZQ6 430 aa10.46□□□□□ -0.74
COL3A1-201ENST00000304636 TMEM14BQ9NUH8 114 aa10.46□□□□□ -0.74
COL3A1-201ENST00000304636 SMIM27A0A1W2PRY6 76 aa10.46□□□□□ -0.74
COL3A1-201ENST00000304636 TMEM178BH3BS89 294 aa10.45□□□□□ -0.74
COL3A1-201ENST00000304636 PRB4P10163 310 aaPredicted RBP10.45□□□□□ -0.74
COL3A1-201ENST00000304636 TOMM7Q9P0U1 55 aa10.45□□□□□ -0.74
COL3A1-201ENST00000304636 VDAC2P45880 294 aaPredicted RBP10.45□□□□□ -0.74
COL3A1-201ENST00000304636 CCL19Q99731 98 aa10.45□□□□□ -0.74
COL3A1-201ENST00000304636 ABCA7Q8IZY2 2146 aa10.45□□□□□ -0.74
COL3A1-201ENST00000304636 WNT2P09544 360 aa10.45□□□□□ -0.74
COL3A1-201ENST00000304636 PLEKHB2Q96CS7 222 aa10.45□□□□□ -0.74
COL3A1-201ENST00000304636 DPH3P1Q9H4G8 78 aa10.45□□□□□ -0.74
COL3A1-201ENST00000304636 TRGV11A0A075B6L2 103 aa10.45□□□□□ -0.74
COL3A1-201ENST00000304636 SIGLEC9Q9Y336 463 aa10.45□□□□□ -0.74
COL3A1-201ENST00000304636 TRPM7Q96QT4 1865 aa10.45□□□□□ -0.74
COL3A1-201ENST00000304636 ARMS2P0C7Q2 107 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 ABHD17AQ96GS6 310 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 SCN5AQ14524 2016 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 LRRK1Q38SD2 2015 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 C9orf118A6NHY6 69 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 STPG4Q8N801 248 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 IGKV1-16P04430 117 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 PDE6HQ13956 83 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 TMEM75Q8N9X5 138 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 PRTN3P24158 256 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 C15orf32Q32M92 178 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 ZNF562Q6V9R5 426 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 ITLN2Q8WWU7 325 aaPredicted RBP10.44□□□□□ -0.74
COL3A1-201ENST00000304636 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.44□□□□□ -0.74
COL3A1-201ENST00000304636 Q8TAT8 98 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 ZNF524Q96C55 264 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 SHANK2-AS3Q9BTD1 123 aa10.44□□□□□ -0.74
COL3A1-201ENST00000304636 LYNX1G3V0Z9 82 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 LYNX1P0DP58 116 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 IGLL1P15814 213 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 SLAQ13239 276 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 HAPLN4Q86UW8 402 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 ZNF114Q8NC26 417 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 WISP1O95388 367 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 SRSF6Q13247 344 aaKnown RBP10.43□□□□□ -0.74
COL3A1-201ENST00000304636 C11orf52Q96A22 123 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 SRSF8Q9BRL6 282 aaKnown RBP10.43□□□□□ -0.74
COL3A1-201ENST00000304636 WDR81Q562E7 1941 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 SMKR1H3BMG3 65 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 SSBP2P81877 361 aaPredicted RBP10.43□□□□□ -0.74
COL3A1-201ENST00000304636 MDS2Q8NDY4 140 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 IGKV3D-20A0A0C4DH25 116 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 OOSP1A8MZH6 123 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 IGLV3-1P01715 115 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 COX6B1P14854 86 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 PLXNA4Q9HCM2 1894 aa10.43□□□□□ -0.74
COL3A1-201ENST00000304636 C9orf139Q6ZV77 190 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 VCYO14598 125 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 TMEM155Q4W5P6 130 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 IGHV3-64A0A075B6Q5 118 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 TMEM8BA6NDV4 472 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 GGTLC3B5MD39 225 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 BUB1B-PAK6H3BSN5 160 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 TNFRSF6BO95407 300 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 SPINK8P0C7L1 97 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 COX8AP10176 69 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 COA6Q5JTJ3 125 aaKnown RBP10.42□□□□□ -0.74
COL3A1-201ENST00000304636 MORN3Q6PF18 240 aaPredicted RBP10.42□□□□□ -0.74
COL3A1-201ENST00000304636 LINC00477Q96M19 166 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 PRDM6Q9NQX0 595 aa10.42□□□□□ -0.74
COL3A1-201ENST00000304636 IGHV1-24A0A0C4DH33 117 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 THBDP07204 575 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 ESPL1Q14674 2120 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 C5orf64Q2M2E5 130 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 PEMTQ9UBM1 199 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 FAM104BQ5XKR9 115 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 LSM4Q9Y4Z0 139 aaKnown RBP10.41□□□□□ -0.74
COL3A1-201ENST00000304636 ZNF318Q5VUA4 2279 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 PRSS46E5RG02 174 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 HAX1O00165 279 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 CDPF1Q6NVV7 123 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 C7orf69Q9H7B7 122 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 NDUFA4L2Q9NRX3 87 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 TMEM249Q2WGJ8 235 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 FAM168AQ92567 244 aa10.41□□□□□ -0.74
COL3A1-201ENST00000304636 CEP290O15078 2479 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms