RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NUP35Q8NFH5 326 aa11.52□□□□□ -0.57
CCDC88A-201ENST00000263630 NDUFB1O75438 58 aa11.52□□□□□ -0.57
CCDC88A-201ENST00000263630 GZMMP51124 257 aa11.52□□□□□ -0.57
CCDC88A-201ENST00000263630 WFDC12Q8WWY7 111 aa11.52□□□□□ -0.57
CCDC88A-201ENST00000263630 GFRA4Q9GZZ7 299 aa11.52□□□□□ -0.57
CCDC88A-201ENST00000263630 F8VVB4 439 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 F8VWA3 439 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 SRSF7Q16629 238 aaKnown RBP eCLIP11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 MPV17L2Q567V2 206 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 MDS2Q8NDY4 140 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 TFF2Q03403 129 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 SBF1O95248 1867 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 IGHV3-53P01767 116 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 SLAQ13239 276 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 MINOS1Q5TGZ0 78 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 DMRTC2Q8IXT2 367 aaPredicted RBP11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 MINOS1-NBL1R4GNA1 71 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 PATE3B3GLJ2 98 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 CDCP2Q5VXM1 449 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 SH2D1AO60880 128 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 ANXA2RQ3ZCQ2 193 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 ZC2HC1BQ5TFG8 222 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 I3L3M4 83 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 LY96Q9Y6Y9 160 aa11.51□□□□□ -0.57
CCDC88A-201ENST00000263630 RFNGQ9Y644 331 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 LY75O60449 1722 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 ZNF319Q9P2F9 582 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 DENND4AQ7Z401 1863 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 FGF6P10767 208 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 K7ERS5 55 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 THBDP07204 575 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 OR11H6Q8NGC7 330 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 REPIN1Q9BWE0 567 aaKnown RBP11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 DEPPQ9NTK1 212 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 PCNX1Q96RV3 2341 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 C14orf178Q8N769 122 aaPredicted RBP11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 PLAC1Q9HBJ0 212 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 RPL15P61313 204 aaKnown RBP11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 LCN12Q6JVE5 192 aa11.5□□□□□ -0.57
CCDC88A-201ENST00000263630 TRAV40A0A0B4J280 105 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 F6UB75 175 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 ACYP1P07311 99 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 SPATA31B1PQ5VZV4 182 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 C19orf48Q6RUI8 117 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 OOSP1A8MZH6 123 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 Q5BKY6 102 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 EXOC3-AS1Q8N2X6 119 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 DAD1P61803 113 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 A0A1B0GW64 132 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 AGMATQ9BSE5 352 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 C9orf118A6NHY6 69 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 MRPS18CQ9Y3D5 142 aaKnown RBP11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 CD55P08174 381 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 APOC4P55056 127 aa11.49□□□□□ -0.57
CCDC88A-201ENST00000263630 IGFBP6P24592 240 aaPredicted RBP11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 PFN2P35080 140 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 SRSF2Q01130 221 aaKnown RBP11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 SBF2Q86WG5 1849 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 BVES-AS1Q5T3Y7 98 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 CEACAM1P13688 526 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 SYNJ2BPP57105 145 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 MORN5Q5VZ52 161 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 RNF5Q99942 180 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 PIN1P1O15428 100 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 CLPSP04118 112 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 HLA-DMBP28068 263 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 ARHGAP32A7KAX9 2087 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 UBE2BP63146 152 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 PDE6HQ13956 83 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 CACNA1GO43497 2377 aa11.48□□□□□ -0.57
CCDC88A-201ENST00000263630 KLHL30-AS1Q8NEE0 82 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 TRAV1-1A0A0B4J248 108 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 C5orf67F2Z3F1 127 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 FAM27E3Q08E93 113 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 LIMS2Q7Z4I7 341 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 F5H768 121 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 TIMM23O14925 209 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 PSG7Q13046 419 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 PRO1854Q9UHT4 67 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 MRPL14Q6P1L8 145 aaKnown RBP11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 MPZP25189 248 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 PRB3Q04118 309 aaPredicted RBP11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 A0A1B0GWJ7 208 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 GAGE7O76087 117 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 GAGE12FP0CL80 117 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 GAGE12GP0CL81 117 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 GAGE12IP0CL82 117 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 C14orf132Q9NPU4 83 aa11.47□□□□□ -0.57
CCDC88A-201ENST00000263630 CFHR2P36980 270 aa11.46□□□□□ -0.57
CCDC88A-201ENST00000263630 KNCNA6PVL3 124 aa11.46□□□□□ -0.57
CCDC88A-201ENST00000263630 E9PQ18 207 aa11.46□□□□□ -0.57
CCDC88A-201ENST00000263630 DEFB130BP0DP73 79 aa11.46□□□□□ -0.57
CCDC88A-201ENST00000263630 DEFB130AP0DP74 79 aa11.46□□□□□ -0.57
CCDC88A-201ENST00000263630 TMEM243Q9BU79 118 aa11.46□□□□□ -0.57
CCDC88A-201ENST00000263630 MARF1Q9Y4F3 1742 aaKnown RBP11.46□□□□□ -0.57
CCDC88A-201ENST00000263630 IGHV1-24A0A0C4DH33 117 aa11.46□□□□□ -0.58
CCDC88A-201ENST00000263630 CCL3L1P16619 93 aa11.46□□□□□ -0.58
CCDC88A-201ENST00000263630 C11orf44Q8N8P7 122 aa11.46□□□□□ -0.58
CCDC88A-201ENST00000263630 ORMDL1Q9P0S3 153 aa11.46□□□□□ -0.58
CCDC88A-201ENST00000263630 SLC22A18ASQ8N1D0 253 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 348.8 ms