RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 BLNKQ8WV28 456 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 DUX5Q96PT3 197 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 IMMP2LQ96T52 175 aa17.61■□□□□ 0.41
CDX1-201ENST00000231656 SRD5A1P18405 259 aa17.6■□□□□ 0.41
CDX1-201ENST00000231656 RANP62826 216 aaKnown RBP17.6■□□□□ 0.41
CDX1-201ENST00000231656 TMEM86BQ8N661 226 aa17.6■□□□□ 0.41
CDX1-201ENST00000231656 OR10G8Q8NGN5 311 aa17.6■□□□□ 0.41
CDX1-201ENST00000231656 VN1R17PQ8TDU5 208 aa17.6■□□□□ 0.41
CDX1-201ENST00000231656 TMEM68Q96MH6 324 aa17.6■□□□□ 0.41
CDX1-201ENST00000231656 C5orf52A6NGY3 159 aa17.59■□□□□ 0.41
CDX1-201ENST00000231656 PEX7O00628 323 aa17.59■□□□□ 0.41
CDX1-201ENST00000231656 IGLV2-8P01709 118 aa17.59■□□□□ 0.41
CDX1-201ENST00000231656 IL4P05112 153 aa17.59■□□□□ 0.41
CDX1-201ENST00000231656 TXN2Q99757 166 aa17.59■□□□□ 0.41
CDX1-201ENST00000231656 F8P00451 2351 aa17.59■□□□□ 0.41
CDX1-201ENST00000231656 IGHV3-23P01764 117 aa17.58■□□□□ 0.41
CDX1-201ENST00000231656 TAS2R60P59551 318 aa17.58■□□□□ 0.41
CDX1-201ENST00000231656 SNRPEP62304 92 aaKnown RBP17.58■□□□□ 0.41
CDX1-201ENST00000231656 TRBV9A0A0B4J1U6 114 aa17.58■□□□□ 0.4
CDX1-201ENST00000231656 G3V318 75 aa17.58■□□□□ 0.4
CDX1-201ENST00000231656 TRGC2P03986 189 aa17.58■□□□□ 0.4
CDX1-201ENST00000231656 CRIP2P52943 208 aaPredicted RBP17.58■□□□□ 0.4
CDX1-201ENST00000231656 KCNIP4Q6PIL6 250 aa17.58■□□□□ 0.4
CDX1-201ENST00000231656 SRD5A3Q9H8P0 318 aa17.58■□□□□ 0.4
CDX1-201ENST00000231656 A0A1W2PPQ1 181 aa17.57■□□□□ 0.4
CDX1-201ENST00000231656 PHOX2AO14813 284 aa17.57■□□□□ 0.4
CDX1-201ENST00000231656 IGF1P05019 195 aa17.57■□□□□ 0.4
CDX1-201ENST00000231656 S100A6P06703 90 aa17.57■□□□□ 0.4
CDX1-201ENST00000231656 USF2Q15853 346 aaPredicted RBP17.57■□□□□ 0.4
CDX1-201ENST00000231656 LINC00479Q96M42 142 aa17.57■□□□□ 0.4
CDX1-201ENST00000231656 ZNF586Q9NXT0 402 aa17.57■□□□□ 0.4
CDX1-201ENST00000231656 EPDR1Q9UM22 224 aa17.57■□□□□ 0.4
CDX1-201ENST00000231656 PGPA6NDG6 321 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 DNAJC9-AS1A6NH13 148 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 CTSGP08311 255 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 HIST1H1EP10412 219 aaKnown RBP17.56■□□□□ 0.4
CDX1-201ENST00000231656 CNN1P51911 297 aaKnown RBP17.56■□□□□ 0.4
CDX1-201ENST00000231656 FOXL1Q12952 345 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 OR5I1Q13606 314 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 C19orf54Q5BKX5 351 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 LINC00527Q9UJ94 153 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 OR2T8A6NH00 312 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 H3BTX0 84 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 GCGP01275 180 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 GNG5P63218 68 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 RHOGP84095 191 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 ZNF502Q8TBZ5 544 aa17.56■□□□□ 0.4
CDX1-201ENST00000231656 NF1P21359 2839 aa17.55■□□□□ 0.4
CDX1-201ENST00000231656 TRAV41A0A0B4J266 112 aa17.55■□□□□ 0.4
CDX1-201ENST00000231656 INAFM1C9JVW0 142 aa17.55■□□□□ 0.4
CDX1-201ENST00000231656 TYMSP04818 313 aa17.55■□□□□ 0.4
CDX1-201ENST00000231656 SLC25A5P05141 298 aaKnown RBP17.55■□□□□ 0.4
CDX1-201ENST00000231656 FAM3BP58499 235 aaPredicted RBP17.55■□□□□ 0.4
CDX1-201ENST00000231656 C15orf32Q32M92 178 aa17.55■□□□□ 0.4
CDX1-201ENST00000231656 Q9H3A6 140 aa17.55■□□□□ 0.4
CDX1-201ENST00000231656 ESM1Q9NQ30 184 aa17.55■□□□□ 0.4
CDX1-201ENST00000231656 AP4M1O00189 453 aa17.54■□□□□ 0.4
CDX1-201ENST00000231656 UBE2CO00762 179 aa17.54■□□□□ 0.4
CDX1-201ENST00000231656 MRPS12O15235 138 aaKnown RBP17.54■□□□□ 0.4
CDX1-201ENST00000231656 ADMP35318 185 aa17.54■□□□□ 0.4
CDX1-201ENST00000231656 ZNF414Q96IQ9 312 aa17.54■□□□□ 0.4
CDX1-201ENST00000231656 CHRDL1Q9BU40 450 aa17.54■□□□□ 0.4
CDX1-201ENST00000231656 PPP5D1E7EU14 171 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 SCGB2A1O75556 95 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 IGLC2P0DOY2 106 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 BPIFA4PQ86YQ2 179 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 C5orf17Q8NAS9 161 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 NOL4LQ96MY1 436 aaPredicted RBP17.53■□□□□ 0.4
CDX1-201ENST00000231656 PRSS22Q9GZN4 317 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 NPFFR1Q9GZQ6 430 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 TRAV34A0A0B4J273 112 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 ZNF98A6NK75 572 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 HIST1H2BKO60814 126 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 HIST1H2BJP06899 126 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 HIST1H2BOP23527 126 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 HIST1H2BBP33778 126 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 HIST1H2BDP58876 126 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 ERVFC1-1P60608 527 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 HIST1H2BCP62807 126 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 HIST2H2BEQ16778 126 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 TMEM183BQ1AE95 376 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.53■□□□□ 0.4
CDX1-201ENST00000231656 FRZBQ92765 325 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 HIST1H2BHQ93079 126 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 HIST1H2BNQ99877 126 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 HIST1H2BMQ99879 126 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 OTORQ9NRC9 128 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 OSTCQ9NRP0 149 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 IL36BQ9NZH7 164 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 KLF12Q9Y4X4 402 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 V9GYV3 84 aa17.53■□□□□ 0.4
CDX1-201ENST00000231656 FN1P02751 2386 aaKnown RBP17.53■□□□□ 0.4
CDX1-201ENST00000231656 SLC17A3O00476 420 aa17.52■□□□□ 0.4
CDX1-201ENST00000231656 ISLRO14498 428 aa17.52■□□□□ 0.4
CDX1-201ENST00000231656 S100A7AQ86SG5 101 aa17.52■□□□□ 0.4
CDX1-201ENST00000231656 ZNF418Q8TF45 676 aaPredicted RBP17.51■□□□□ 0.39
CDX1-201ENST00000231656 ATG101Q9BSB4 218 aa17.51■□□□□ 0.39
CDX1-201ENST00000231656 ZNF702PQ9H963 129 aa17.51■□□□□ 0.39
CDX1-201ENST00000231656 TRBV19A0A075B6N1 114 aa17.51■□□□□ 0.39
CDX1-201ENST00000231656 GPR183P32249 361 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 128.3 ms