RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 DEFB125Q8N687 156 aa9.85□□□□□ -0.83
NUP88-201ENST00000225696 C8orf46Q8TAG6 207 aa9.85□□□□□ -0.83
NUP88-201ENST00000225696 TNFRSF1AP19438 455 aa9.85□□□□□ -0.83
NUP88-201ENST00000225696 TCTAP57738 103 aa9.85□□□□□ -0.83
NUP88-201ENST00000225696 LOXL1Q08397 574 aaPredicted RBP9.85□□□□□ -0.83
NUP88-201ENST00000225696 VMA21Q3ZAQ7 101 aa9.85□□□□□ -0.83
NUP88-201ENST00000225696 ANKRD39Q53RE8 183 aa9.85□□□□□ -0.83
NUP88-201ENST00000225696 LDLRAD2Q5SZI1 272 aa9.85□□□□□ -0.83
NUP88-201ENST00000225696 PVRIGQ6DKI7 326 aa9.85□□□□□ -0.83
NUP88-201ENST00000225696 MAP1LC3CQ9BXW4 147 aa9.85□□□□□ -0.83
NUP88-201ENST00000225696 GFRA4Q9GZZ7 299 aa9.85□□□□□ -0.83
NUP88-201ENST00000225696 APC2O95996 2303 aa9.85□□□□□ -0.83
NUP88-201ENST00000225696 ZGRF1Q86YA3 2104 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.84□□□□□ -0.83
NUP88-201ENST00000225696 TRAV8-6A0A0B4J262 113 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 TMEM178BH3BS89 294 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 HAX1O00165 279 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 LIPFP07098 398 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 HTR1DP28221 377 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 SRSF12Q8WXF0 261 aaKnown RBP9.84□□□□□ -0.83
NUP88-201ENST00000225696 TMEM191AQ9H0A3 160 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 PPIAL4EA0A075B759 164 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 PPIAL4DF5H284 164 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 TNFRSF13BO14836 293 aaPredicted RBP9.84□□□□□ -0.83
NUP88-201ENST00000225696 PPIAL4FP0DN26 164 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 RPL27AP46776 148 aaKnown RBP9.84□□□□□ -0.83
NUP88-201ENST00000225696 CRIP1P50238 77 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 FXYD7P58549 80 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 C3orf36Q3SXR2 165 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 C2orf91Q6ZV80 131 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 WFDC8Q8IUA0 241 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 BCL6BQ8N143 479 aaPredicted RBP9.84□□□□□ -0.83
NUP88-201ENST00000225696 PIP4P2Q8N4L2 257 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 DEFB124Q8NES8 71 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 IGFBPL1Q8WX77 278 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 TPPP3Q9BW30 176 aa9.84□□□□□ -0.83
NUP88-201ENST00000225696 SLC25A39Q9BZJ4 359 aaPredicted RBP9.84□□□□□ -0.83
NUP88-201ENST00000225696 SOX21Q9Y651 276 aaPredicted RBP9.84□□□□□ -0.83
NUP88-201ENST00000225696 TEX22C9J3V5 150 aa9.83□□□□□ -0.84
NUP88-201ENST00000225696 IGLC1P0CG04 106 aa9.83□□□□□ -0.84
NUP88-201ENST00000225696 PSG9Q00887 426 aa9.83□□□□□ -0.84
NUP88-201ENST00000225696 C1orf185Q5T7R7 199 aa9.83□□□□□ -0.84
NUP88-201ENST00000225696 C16orf54Q6UWD8 224 aa9.83□□□□□ -0.84
NUP88-201ENST00000225696 PET117Q6UWS5 81 aa9.83□□□□□ -0.84
NUP88-201ENST00000225696 LINC00311Q8N616 119 aa9.83□□□□□ -0.84
NUP88-201ENST00000225696 HIGD1AQ9Y241 93 aa9.83□□□□□ -0.84
NUP88-201ENST00000225696 NDUFB3O43676 98 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 CRYGBP07316 175 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 OR5AL1P0C617 328 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 IGHV1-8P0DP01 117 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 ARF6P62330 175 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 BSPH1Q075Z2 132 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 FAM162BQ5T6X4 162 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 LINC01545Q5VT33 79 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 ETFRF1Q6IPR1 90 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 ZNF747Q9BV97 191 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 CST9LQ9H4G1 147 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 OTORQ9NRC9 128 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 SIGLEC9Q9Y336 463 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 SPTBN2O15020 2390 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 ACACAQ13085 2346 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 A0A096LNJ9 63 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 HSBP1L1C9JCN9 74 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 IGKV1-17P01599 117 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 HOXB4P17483 251 aaPredicted RBP9.82□□□□□ -0.84
NUP88-201ENST00000225696 PLP1P60201 277 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 NUP37Q8NFH4 326 aa9.82□□□□□ -0.84
NUP88-201ENST00000225696 COL25A1Q9BXS0 654 aaPredicted RBP9.82□□□□□ -0.84
NUP88-201ENST00000225696 A0A1B0GUT8 65 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 A0A1W2PRD5 423 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 A0A1W2PRF3 423 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 A0A1W2PRM7 423 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 FAM231BA6NCW3 169 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 M0R3E3 92 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 RBP4P02753 201 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 FTH1P19P0C7X4 201 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 IFI27P40305 119 aaPredicted RBP9.81□□□□□ -0.84
NUP88-201ENST00000225696 TMEM155Q4W5P6 130 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 TMEM133Q9H2Q1 129 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 FBXL15Q9H469 300 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 AP5S1Q9NUS5 200 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 S4R3C0 116 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 ZNF292O60281 2723 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 LOC389332A0A1B0GUA5 103 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 CEACAM4O75871 244 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 HLA-DRB1P01911 266 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 THBDP07204 575 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 GPR183P32249 361 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 MC5RP33032 325 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 LGALS7P47929 136 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 SAPCD1Q5SSQ6 148 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 FAM71F2Q6NXP2 309 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 C8orf49Q96NF6 230 aa9.81□□□□□ -0.84
NUP88-201ENST00000225696 F11RQ9Y624 299 aaKnown RBP9.81□□□□□ -0.84
NUP88-201ENST00000225696 I3L2K1 104 aa9.8□□□□□ -0.84
NUP88-201ENST00000225696 OCIAD2Q56VL3 154 aa9.8□□□□□ -0.84
NUP88-201ENST00000225696 TMEM108Q6UXF1 575 aa9.8□□□□□ -0.84
NUP88-201ENST00000225696 C12orf54Q6X4T0 127 aa9.8□□□□□ -0.84
NUP88-201ENST00000225696 HSPB8Q9UJY1 196 aa9.8□□□□□ -0.84
NUP88-201ENST00000225696 TMSB15BA0A087X1C1 80 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms