RNA–Protein interactions for RNA: ENST00000622656.1

PCDHGC3-207, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 3

Gene PCDHGC3, Length 632 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-207ENST00000622656 SSH3Q8TE77 659 aa12.58□□□□□ -0.4
PCDHGC3-207ENST00000622656 ZNF296Q8WUU4 475 aaPredicted RBP12.58□□□□□ -0.4
PCDHGC3-207ENST00000622656 PTPN18Q99952 460 aa12.58□□□□□ -0.4
PCDHGC3-207ENST00000622656 GNL3LQ9NVN8 582 aaKnown RBP12.58□□□□□ -0.4
PCDHGC3-207ENST00000622656 HMG20BQ9P0W2 317 aa12.58□□□□□ -0.4
PCDHGC3-207ENST00000622656 FAM198AQ9UFP1 575 aa12.58□□□□□ -0.4
PCDHGC3-207ENST00000622656 CDK5RAP2Q96SN8 1893 aa12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 CCDC85CA6NKD9 419 aa12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 ZBTB22O15209 634 aa12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 TCP10Q12799 353 aa12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 G3BP1Q13283 466 aaKnown RBP eCLIP12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 TBC1D9Q6ZT07 1266 aa12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 MIGA2Q7L4E1 593 aa12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 FAM83AQ86UY5 434 aa12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 IFNL1Q8IU54 200 aa12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 ZKSCAN4Q969J2 545 aaPredicted RBP12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 OPTNQ96CV9 577 aa12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 ABCF2Q9UG63 623 aa12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 AKAP2Q9Y2D5 859 aa12.57□□□□□ -0.4
PCDHGC3-207ENST00000622656 HTTP42858 3142 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 ZSWIM8A7E2V4 1837 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 GPR25O00155 361 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 ZBTB48P10074 688 aaPredicted RBP12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 MCAMP43121 646 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 MAP3K9P80192 1104 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 CAP1Q01518 475 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 SREBF2Q12772 1141 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 MVPQ14764 893 aaKnown RBP12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 FKBP1CQ5VVH2 108 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 FAM151AQ8WW52 585 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 MS4A4AQ96JQ5 239 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 DBNDD2Q9BQY9 259 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 USP40Q9NVE5 1235 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 TLR7Q9NYK1 1049 aaKnown RBP12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 TMOD2Q9NZR1 351 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 SNCAIPQ9Y6H5 919 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 GAKO14976 1311 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 RFX7Q2KHR2 1363 aa12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 RPAP1Q9BWH6 1393 aaPredicted RBP12.56□□□□□ -0.4
PCDHGC3-207ENST00000622656 MANSC4A6NHS7 340 aaPredicted RBP12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 UNCXA6NJT0 531 aa12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 SURF6O75683 361 aaKnown RBP12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 ARID4AP29374 1257 aaPredicted RBP12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 INPP5BP32019 993 aa12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 MECOMQ03112 1051 aa12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 TNNI3KQ59H18 835 aa12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 CEP85Q6P2H3 762 aa12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 SH3BP5LQ7L8J4 393 aa12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 OTUD5Q96G74 571 aa12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 WRNIP1Q96S55 665 aa12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 DDX4Q9NQI0 724 aaKnown RBP12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 SNRKQ9NRH2 765 aa12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 FPGT-TNNI3KV9GXZ4 949 aa12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 PDS5AQ29RF7 1337 aaKnown RBP12.55□□□□□ -0.4
PCDHGC3-207ENST00000622656 PHIPQ8WWQ0 1821 aa12.54□□□□□ -0.4
PCDHGC3-207ENST00000622656 TESPA1A2RU30 521 aaPredicted RBP12.54□□□□□ -0.4
PCDHGC3-207ENST00000622656 CTU1Q7Z7A3 348 aaKnown RBP12.54□□□□□ -0.4
PCDHGC3-207ENST00000622656 SPATA5Q8NB90 893 aa12.54□□□□□ -0.4
PCDHGC3-207ENST00000622656 BRI3BPQ8WY22 251 aa12.54□□□□□ -0.4
PCDHGC3-207ENST00000622656 CFHR5Q9BXR6 569 aa12.54□□□□□ -0.4
PCDHGC3-207ENST00000622656 NOP58Q9Y2X3 529 aaKnown RBP12.54□□□□□ -0.4
PCDHGC3-207ENST00000622656 ATRNL1Q5VV63 1379 aa12.54□□□□□ -0.4
PCDHGC3-207ENST00000622656 MAST2Q6P0Q8 1798 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 SIPA1L1O43166 1804 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 CENPFP49454 3210 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 TNRC18O15417 2968 aaPredicted RBP12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 WDHD1O75717 1129 aaPredicted RBP12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 BTDP43251 543 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 RGS3P49796 1198 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 RHBDL3P58872 404 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 GORABQ5T7V8 394 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 C20orf194Q5TEA3 1177 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 DZIP1Q86YF9 867 aaKnown RBP12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 FAM163AQ96GL9 167 aaPredicted RBP12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 CCDC8Q9H0W5 538 aaPredicted RBP12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 DBNLQ9UJU6 430 aaKnown RBP12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 COG6Q9Y2V7 657 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 MROH7-TTC4A0A0A0MT08 1334 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 FOCADQ5VW36 1801 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 PDE4DIPQ5VU43 2346 aa12.53□□□□□ -0.4
PCDHGC3-207ENST00000622656 PTPRFP10586 1907 aa12.52□□□□□ -0.4
PCDHGC3-207ENST00000622656 DDTLA6NHG4 134 aaPredicted RBP12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 SPDYE5A6NIY4 337 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 INHBEP58166 350 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 CRHR2Q13324 411 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 OS9Q13438 667 aaPredicted RBP12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 ERICH6Q7L0X2 663 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 SIRT2Q8IXJ6 389 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 FAM43AQ8N2R8 423 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 ZGPATQ8N5A5 531 aaKnown RBP12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 NSUN4Q96CB9 384 aaKnown RBP12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 EAF2Q96CJ1 260 aaPredicted RBP12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 IDI2Q9BXS1 227 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 GPR108Q9NPR9 543 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 PCDH10Q9P2E7 1040 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 ZNF112Q9UJU3 913 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 EXOC6BQ9Y2D4 811 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 CSADQ9Y600 493 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 NDUFB9Q9Y6M9 179 aa12.52□□□□□ -0.41
PCDHGC3-207ENST00000622656 ATAD5Q96QE3 1844 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms