RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 GAS2L3Q86XJ1 694 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 SMARCC2Q8TAQ2 1214 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 SLC52A2Q9HAB3 445 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 MAGI2Q86UL8 1455 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 PTH1RQ03431 593 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 TBC1D8BQ0IIM8 1120 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 BICD1Q96G01 975 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 PPP1R9BQ96SB3 815 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 VPS18Q9P253 973 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 MAST1Q9Y2H9 1570 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 KCNQ3O43525 872 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 TRAF1Q13077 416 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 KRT40Q6A162 431 aa15.82■□□□□ 0.12
CPSF1-212ENST00000616140 SPDYE3A6NKU9 549 aa15.81■□□□□ 0.12
CPSF1-212ENST00000616140 PUM3Q15397 648 aaKnown RBP15.81■□□□□ 0.12
CPSF1-212ENST00000616140 MNAT1P51948 309 aa15.81■□□□□ 0.12
CPSF1-212ENST00000616140 TUBB4BP68371 445 aa15.81■□□□□ 0.12
CPSF1-212ENST00000616140 DNAJC21Q5F1R6 531 aaKnown RBP15.81■□□□□ 0.12
CPSF1-212ENST00000616140 HS2ST1Q7LGA3 356 aa15.81■□□□□ 0.12
CPSF1-212ENST00000616140 IPO4Q8TEX9 1081 aaKnown RBP15.81■□□□□ 0.12
CPSF1-212ENST00000616140 PLEKHG3A1L390 1219 aa15.81■□□□□ 0.12
CPSF1-212ENST00000616140 IVLP07476 585 aa15.81■□□□□ 0.12
CPSF1-212ENST00000616140 PLCG2P16885 1265 aa15.81■□□□□ 0.12
CPSF1-212ENST00000616140 ATP5JP18859 108 aa15.81■□□□□ 0.12
CPSF1-212ENST00000616140 BBXQ8WY36 941 aaPredicted RBP15.81■□□□□ 0.12
CPSF1-212ENST00000616140 OGFRQ9NZT2 677 aa15.81■□□□□ 0.12
CPSF1-212ENST00000616140 A0A0D9SFI3 127 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 OPA1O60313 960 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 ZAP70P43403 619 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 VAV2P52735 878 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 CCDC155Q8N6L0 562 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 MYRIPQ8NFW9 859 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 CARD6Q9BX69 1037 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 NYXQ9GZU5 481 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 RBM28Q9NW13 759 aaKnown RBP15.8■□□□□ 0.12
CPSF1-212ENST00000616140 ZNF521Q96K83 1311 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 CUTAO60888 179 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 TUBBP07437 444 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 PIK3AP1Q6ZUJ8 805 aa15.8■□□□□ 0.12
CPSF1-212ENST00000616140 CFAP65Q6ZU64 1925 aaKnown RBP15.8■□□□□ 0.12
CPSF1-212ENST00000616140 KIF24Q5T7B8 1368 aa15.79■□□□□ 0.12
CPSF1-212ENST00000616140 GIGYF1O75420 1035 aaPredicted RBP15.79■□□□□ 0.12
CPSF1-212ENST00000616140 TAF5LO75529 589 aa15.79■□□□□ 0.12
CPSF1-212ENST00000616140 MLKLQ8NB16 471 aa15.79■□□□□ 0.12
CPSF1-212ENST00000616140 E7EWF7 191 aa15.79■□□□□ 0.12
CPSF1-212ENST00000616140 ACTN2P35609 894 aa15.79■□□□□ 0.12
CPSF1-212ENST00000616140 IFT81Q8WYA0 676 aa15.79■□□□□ 0.12
CPSF1-212ENST00000616140 GTPBP4Q9BZE4 634 aaKnown RBP15.79■□□□□ 0.12
CPSF1-212ENST00000616140 NEURL1BA8MQ27 555 aa15.79■□□□□ 0.12
CPSF1-212ENST00000616140 TRAF5O00463 557 aa15.79■□□□□ 0.12
CPSF1-212ENST00000616140 DNAJC10Q8IXB1 793 aa15.79■□□□□ 0.12
CPSF1-212ENST00000616140 MTMR6Q9Y217 621 aa15.79■□□□□ 0.12
CPSF1-212ENST00000616140 ABCC2Q92887 1545 aa15.79■□□□□ 0.12
CPSF1-212ENST00000616140 ZEB2O60315 1214 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 RGS22Q8NE09 1264 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 SEC62Q99442 399 aaKnown RBP15.78■□□□□ 0.12
CPSF1-212ENST00000616140 DENND2AQ9ULE3 1009 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 CTNND2Q9UQB3 1225 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 RTCBQ9Y3I0 505 aaKnown RBP15.78■□□□□ 0.12
CPSF1-212ENST00000616140 MRVI1Q9Y6F6 885 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 ELF2Q15723 593 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 USP37Q86T82 979 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 PDE8AO60658 829 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 OGFOD1Q8N543 542 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 TSC1Q92574 1164 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 KCNJ14Q9UNX9 436 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 HSPA2P54652 639 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 STAMQ92783 540 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 PLEKHF1Q96S99 279 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 BTG4Q9NY30 223 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 PODXL2Q9NZ53 605 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 TPCN1Q9ULQ1 816 aa15.78■□□□□ 0.12
CPSF1-212ENST00000616140 MAGI3Q5TCQ9 1506 aa15.77■□□□□ 0.12
CPSF1-212ENST00000616140 PDE4DQ08499 809 aa15.77■□□□□ 0.12
CPSF1-212ENST00000616140 MYSM1Q5VVJ2 828 aa15.77■□□□□ 0.12
CPSF1-212ENST00000616140 USP28Q96RU2 1077 aa15.77■□□□□ 0.12
CPSF1-212ENST00000616140 NOC4LQ9BVI4 516 aaKnown RBP15.77■□□□□ 0.12
CPSF1-212ENST00000616140 ANKRD2Q9GZV1 360 aa15.77■□□□□ 0.12
CPSF1-212ENST00000616140 hCG_1642624A0A1W2PR95 340 aa15.77■□□□□ 0.12
CPSF1-212ENST00000616140 EBAG9O00559 213 aa15.77■□□□□ 0.12
CPSF1-212ENST00000616140 WDHD1O75717 1129 aaPredicted RBP15.77■□□□□ 0.12
CPSF1-212ENST00000616140 CD2BP2O95400 341 aaKnown RBP15.77■□□□□ 0.12
CPSF1-212ENST00000616140 GIGYF2Q6Y7W6 1299 aaKnown RBP15.77■□□□□ 0.12
CPSF1-212ENST00000616140 LMBR1Q8WVP7 490 aa15.77■□□□□ 0.12
CPSF1-212ENST00000616140 ATP7AQ04656 1500 aa15.77■□□□□ 0.11
CPSF1-212ENST00000616140 ARHGAP6O43182 974 aa15.77■□□□□ 0.11
CPSF1-212ENST00000616140 KRT9P35527 623 aa15.77■□□□□ 0.11
CPSF1-212ENST00000616140 PLCD1P51178 756 aa15.77■□□□□ 0.11
CPSF1-212ENST00000616140 TTLL12Q14166 644 aaPredicted RBP15.77■□□□□ 0.11
CPSF1-212ENST00000616140 ZNF532Q9HCE3 1301 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 TLDC2A0PJX2 215 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 NR1I2O75469 434 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 FAM13AO94988 1023 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 PARP1P09874 1014 aaKnown RBP15.76■□□□□ 0.11
CPSF1-212ENST00000616140 NLRP12P59046 1061 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 SV2BQ7L1I2 683 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 TTC6Q86TZ1 520 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 CSGALNACT2Q8N6G5 542 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 GPT2Q8TD30 523 aa15.76■□□□□ 0.11
CPSF1-212ENST00000616140 LPIN2Q92539 896 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms