RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 CDC42EP5Q6NZY7 148 aa20.59■□□□□ 0.89
TRIM28-215ENST00000601150 SSC5DA1L4H1 1573 aa20.59■□□□□ 0.89
TRIM28-215ENST00000601150 LDHCP07864 332 aa20.58■□□□□ 0.89
TRIM28-215ENST00000601150 NBPF12Q5TAG4 269 aaPredicted RBP20.58■□□□□ 0.89
TRIM28-215ENST00000601150 MOB2Q70IA6 237 aa20.58■□□□□ 0.89
TRIM28-215ENST00000601150 ARMC9Q7Z3E5 817 aa20.58■□□□□ 0.89
TRIM28-215ENST00000601150 FAM83AQ86UY5 434 aa20.58■□□□□ 0.89
TRIM28-215ENST00000601150 ZNF384Q8TF68 577 aa20.58■□□□□ 0.89
TRIM28-215ENST00000601150 NSUN4Q96CB9 384 aaKnown RBP20.58■□□□□ 0.89
TRIM28-215ENST00000601150 USP40Q9NVE5 1235 aa20.58■□□□□ 0.89
TRIM28-215ENST00000601150 AK9Q5TCS8 1911 aa20.58■□□□□ 0.88
TRIM28-215ENST00000601150 UBE2Q2LH0YL09 131 aa20.57■□□□□ 0.88
TRIM28-215ENST00000601150 SMARCA5O60264 1052 aaPredicted RBP20.57■□□□□ 0.88
TRIM28-215ENST00000601150 IGSF3O75054 1194 aa20.57■□□□□ 0.88
TRIM28-215ENST00000601150 PRKG1Q13976 671 aa20.57■□□□□ 0.88
TRIM28-215ENST00000601150 TEPSINQ96N21 525 aa20.57■□□□□ 0.88
TRIM28-215ENST00000601150 TMEM39BQ9GZU3 492 aa20.57■□□□□ 0.88
TRIM28-215ENST00000601150 PPP1R12BO60237 982 aaPredicted RBP20.56■□□□□ 0.88
TRIM28-215ENST00000601150 ZNF157P51786 506 aaPredicted RBP20.56■□□□□ 0.88
TRIM28-215ENST00000601150 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.56■□□□□ 0.88
TRIM28-215ENST00000601150 CCDC102AQ96A19 550 aa20.56■□□□□ 0.88
TRIM28-215ENST00000601150 PIH1D3Q9NQM4 214 aaKnown RBP20.56■□□□□ 0.88
TRIM28-215ENST00000601150 ANGEL1Q9UNK9 670 aaKnown RBP20.56■□□□□ 0.88
TRIM28-215ENST00000601150 GPR75-ASB3A0A0A6YYF3 556 aa20.55■□□□□ 0.88
TRIM28-215ENST00000601150 BTDP43251 543 aa20.55■□□□□ 0.88
TRIM28-215ENST00000601150 EXOC6Q8TAG9 804 aa20.55■□□□□ 0.88
TRIM28-215ENST00000601150 RPAP1Q9BWH6 1393 aaPredicted RBP20.55■□□□□ 0.88
TRIM28-215ENST00000601150 MAP2K2P36507 400 aa20.54■□□□□ 0.88
TRIM28-215ENST00000601150 HDAC1Q13547 482 aaPredicted RBP20.54■□□□□ 0.88
TRIM28-215ENST00000601150 NAA16Q6N069 864 aaPredicted RBP20.54■□□□□ 0.88
TRIM28-215ENST00000601150 CDAN1Q8IWY9 1227 aa20.54■□□□□ 0.88
TRIM28-215ENST00000601150 FAM151AQ8WW52 585 aa20.54■□□□□ 0.88
TRIM28-215ENST00000601150 NDUFB9Q9Y6M9 179 aa20.54■□□□□ 0.88
TRIM28-215ENST00000601150 OTOFQ9HC10 1997 aa20.54■□□□□ 0.88
TRIM28-215ENST00000601150 FAM155AB1AL88 458 aaPredicted RBP20.53■□□□□ 0.88
TRIM28-215ENST00000601150 AOC2O75106 756 aa20.53■□□□□ 0.88
TRIM28-215ENST00000601150 NOGQ13253 232 aa20.53■□□□□ 0.88
TRIM28-215ENST00000601150 TTF1Q15361 905 aaPredicted RBP20.53■□□□□ 0.88
TRIM28-215ENST00000601150 MAP3K11Q16584 847 aa20.53■□□□□ 0.88
TRIM28-215ENST00000601150 HOOK2Q96ED9 719 aa20.53■□□□□ 0.88
TRIM28-215ENST00000601150 NOL10Q9BSC4 688 aaKnown RBP20.53■□□□□ 0.88
TRIM28-215ENST00000601150 FZD1Q9UP38 647 aa20.53■□□□□ 0.88
TRIM28-215ENST00000601150 CDK5RAP2Q96SN8 1893 aa20.52■□□□□ 0.88
TRIM28-215ENST00000601150 RFX7Q2KHR2 1363 aa20.52■□□□□ 0.88
TRIM28-215ENST00000601150 IDH1O75874 414 aaKnown RBP20.52■□□□□ 0.88
TRIM28-215ENST00000601150 MAP4K4O95819 1239 aaPredicted RBP20.52■□□□□ 0.88
TRIM28-215ENST00000601150 SLC10A3P09131 477 aa20.52■□□□□ 0.88
TRIM28-215ENST00000601150 ATP5JP18859 108 aa20.52■□□□□ 0.88
TRIM28-215ENST00000601150 TCP10Q12799 353 aa20.52■□□□□ 0.88
TRIM28-215ENST00000601150 NFIAQ12857 509 aa20.52■□□□□ 0.88
TRIM28-215ENST00000601150 LDLRAD1Q5T700 205 aa20.52■□□□□ 0.88
TRIM28-215ENST00000601150 IDI2Q9BXS1 227 aa20.52■□□□□ 0.88
TRIM28-215ENST00000601150 ANTXR1Q9H6X2 564 aa20.52■□□□□ 0.88
TRIM28-215ENST00000601150 FAM198AQ9UFP1 575 aa20.52■□□□□ 0.88
TRIM28-215ENST00000601150 USP2O75604 605 aaPredicted RBP20.51■□□□□ 0.87
TRIM28-215ENST00000601150 HSPA1AP0DMV8 641 aaKnown RBP20.51■□□□□ 0.87
TRIM28-215ENST00000601150 HSPA1BP0DMV9 641 aaKnown RBP20.51■□□□□ 0.87
TRIM28-215ENST00000601150 IREB2P48200 963 aaKnown RBP20.51■□□□□ 0.87
TRIM28-215ENST00000601150 RHBDL3P58872 404 aa20.51■□□□□ 0.87
TRIM28-215ENST00000601150 MAP2K1Q02750 393 aaPredicted RBP20.51■□□□□ 0.87
TRIM28-215ENST00000601150 MAP3K12Q12852 859 aa20.51■□□□□ 0.87
TRIM28-215ENST00000601150 RASAL3Q86YV0 1011 aa20.51■□□□□ 0.87
TRIM28-215ENST00000601150 DNAJC2Q99543 621 aaKnown RBP20.51■□□□□ 0.87
TRIM28-215ENST00000601150 MYH7P12883 1935 aa20.51■□□□□ 0.87
TRIM28-215ENST00000601150 FOCADQ5VW36 1801 aa20.5■□□□□ 0.87
TRIM28-215ENST00000601150 UNCXA6NJT0 531 aa20.5■□□□□ 0.87
TRIM28-215ENST00000601150 ENTPD3O75355 529 aa20.5■□□□□ 0.87
TRIM28-215ENST00000601150 WDHD1O75717 1129 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-215ENST00000601150 BAG3O95817 575 aa20.5■□□□□ 0.87
TRIM28-215ENST00000601150 RGS3P49796 1198 aa20.5■□□□□ 0.87
TRIM28-215ENST00000601150 TMED8Q6PL24 325 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-215ENST00000601150 GCC1Q96CN9 775 aa20.5■□□□□ 0.87
TRIM28-215ENST00000601150 GPATCH3Q96I76 525 aa20.5■□□□□ 0.87
TRIM28-215ENST00000601150 BOLA2Q9H3K6 86 aa20.5■□□□□ 0.87
TRIM28-215ENST00000601150 GOLIM4O00461 696 aa20.49■□□□□ 0.87
TRIM28-215ENST00000601150 CYP7A1P22680 504 aa20.49■□□□□ 0.87
TRIM28-215ENST00000601150 HAUS7Q99871 368 aa20.49■□□□□ 0.87
TRIM28-215ENST00000601150 ECHDC1Q9NTX5 307 aa20.49■□□□□ 0.87
TRIM28-215ENST00000601150 WBP1LQ9NX94 342 aa20.49■□□□□ 0.87
TRIM28-215ENST00000601150 NPM3O75607 178 aaKnown RBP20.48■□□□□ 0.87
TRIM28-215ENST00000601150 PLCG2P16885 1265 aa20.48■□□□□ 0.87
TRIM28-215ENST00000601150 PPP4CP60510 307 aa20.48■□□□□ 0.87
TRIM28-215ENST00000601150 DCAF15Q66K64 600 aa20.48■□□□□ 0.87
TRIM28-215ENST00000601150 ADGRA1Q86SQ6 560 aa20.48■□□□□ 0.87
TRIM28-215ENST00000601150 ZFPM1Q8IX07 1006 aa20.48■□□□□ 0.87
TRIM28-215ENST00000601150 ANKRD13AQ8IZ07 590 aa20.48■□□□□ 0.87
TRIM28-215ENST00000601150 MAGEB6Q8N7X4 407 aa20.48■□□□□ 0.87
TRIM28-215ENST00000601150 AIDAQ96BJ3 306 aa20.48■□□□□ 0.87
TRIM28-215ENST00000601150 RWDD1Q9H446 243 aaPredicted RBP20.48■□□□□ 0.87
TRIM28-215ENST00000601150 PAG1Q9NWQ8 432 aa20.48■□□□□ 0.87
TRIM28-215ENST00000601150 AATFQ9NY61 560 aaKnown RBP eCLIP20.48■□□□□ 0.873e-7■■■■□ 26.6
TRIM28-215ENST00000601150 ZBTB47Q9UFB7 747 aaPredicted RBP20.48■□□□□ 0.87
TRIM28-215ENST00000601150 KIF23Q02241 960 aaPredicted RBP20.47■□□□□ 0.87
TRIM28-215ENST00000601150 PICALMQ13492 652 aa20.47■□□□□ 0.87
TRIM28-215ENST00000601150 TEX11Q8IYF3 940 aa20.47■□□□□ 0.87
TRIM28-215ENST00000601150 SH3RF3Q8TEJ3 882 aaPredicted RBP20.47■□□□□ 0.87
TRIM28-215ENST00000601150 SLC10A4Q96EP9 437 aa20.47■□□□□ 0.87
TRIM28-215ENST00000601150 ZIC5Q96T25 663 aa20.47■□□□□ 0.87
TRIM28-215ENST00000601150 DDX4Q9NQI0 724 aaKnown RBP20.47■□□□□ 0.87
TRIM28-215ENST00000601150 LAMB1P07942 1786 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms