RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 RASAL3Q86YV0 1011 aa17.34■□□□□ 0.37
LIG1-218ENST00000599322 ANKRD13AQ8IZ07 590 aa17.34■□□□□ 0.37
LIG1-218ENST00000599322 ARAP2Q8WZ64 1704 aa17.34■□□□□ 0.37
LIG1-218ENST00000599322 LRP2BPQ9P2M1 347 aa17.34■□□□□ 0.37
LIG1-218ENST00000599322 MYH13Q9UKX3 1938 aa17.33■□□□□ 0.37
LIG1-218ENST00000599322 TNRC18O15417 2968 aaPredicted RBP17.33■□□□□ 0.37
LIG1-218ENST00000599322 TRPA1O75762 1119 aa17.33■□□□□ 0.36
LIG1-218ENST00000599322 SREBF2Q12772 1141 aa17.33■□□□□ 0.36
LIG1-218ENST00000599322 DCAF15Q66K64 600 aa17.33■□□□□ 0.36
LIG1-218ENST00000599322 APOBEC3HQ6NTF7 200 aaKnown RBP17.33■□□□□ 0.36
LIG1-218ENST00000599322 USP40Q9NVE5 1235 aa17.33■□□□□ 0.36
LIG1-218ENST00000599322 RAI14Q9P0K7 980 aa17.33■□□□□ 0.36
LIG1-218ENST00000599322 DAGLAQ9Y4D2 1042 aa17.33■□□□□ 0.36
LIG1-218ENST00000599322 ARID4AP29374 1257 aaPredicted RBP17.32■□□□□ 0.36
LIG1-218ENST00000599322 DIXDC1Q155Q3 683 aa17.32■□□□□ 0.36
LIG1-218ENST00000599322 MAP3K11Q16584 847 aa17.32■□□□□ 0.36
LIG1-218ENST00000599322 LDLRAD1Q5T700 205 aa17.32■□□□□ 0.36
LIG1-218ENST00000599322 TMEM39BQ9GZU3 492 aa17.32■□□□□ 0.36
LIG1-218ENST00000599322 ZBTB40Q9NUA8 1239 aa17.32■□□□□ 0.36
LIG1-218ENST00000599322 HMG20BQ9P0W2 317 aa17.32■□□□□ 0.36
LIG1-218ENST00000599322 EXOC6BQ9Y2D4 811 aa17.32■□□□□ 0.36
LIG1-218ENST00000599322 CSADQ9Y600 493 aa17.32■□□□□ 0.36
LIG1-218ENST00000599322 LAMB1P07942 1786 aa17.32■□□□□ 0.36
LIG1-218ENST00000599322 IGSF3O75054 1194 aa17.31■□□□□ 0.36
LIG1-218ENST00000599322 CACNB3P54284 484 aa17.31■□□□□ 0.36
LIG1-218ENST00000599322 INHBEP58166 350 aa17.31■□□□□ 0.36
LIG1-218ENST00000599322 MLLT1Q03111 559 aaPredicted RBP17.31■□□□□ 0.36
LIG1-218ENST00000599322 CLASRPQ8N2M8 674 aaKnown RBP17.31■□□□□ 0.36
LIG1-218ENST00000599322 FAM151AQ8WW52 585 aa17.31■□□□□ 0.36
LIG1-218ENST00000599322 KIF1BPQ96EK5 621 aa17.31■□□□□ 0.36
LIG1-218ENST00000599322 DBNDD2Q9BQY9 259 aa17.31■□□□□ 0.36
LIG1-218ENST00000599322 AOX1Q06278 1338 aa17.3■□□□□ 0.36
LIG1-218ENST00000599322 RAB11FIP3O75154 756 aa17.3■□□□□ 0.36
LIG1-218ENST00000599322 USP2O75604 605 aaPredicted RBP17.3■□□□□ 0.36
LIG1-218ENST00000599322 CDC42EP5Q6NZY7 148 aa17.3■□□□□ 0.36
LIG1-218ENST00000599322 MANSC4A6NHS7 340 aaPredicted RBP17.29■□□□□ 0.36
LIG1-218ENST00000599322 MAP4K4O95819 1239 aaPredicted RBP17.29■□□□□ 0.36
LIG1-218ENST00000599322 ZBTB48P10074 688 aaPredicted RBP17.29■□□□□ 0.36
LIG1-218ENST00000599322 MAP3K9P80192 1104 aa17.29■□□□□ 0.36
LIG1-218ENST00000599322 MKRN3Q13064 507 aaKnown RBP17.29■□□□□ 0.36
LIG1-218ENST00000599322 OTUD7BQ6GQQ9 843 aa17.29■□□□□ 0.36
LIG1-218ENST00000599322 AACSQ86V21 672 aa17.29■□□□□ 0.36
LIG1-218ENST00000599322 FAM163AQ96GL9 167 aaPredicted RBP17.29■□□□□ 0.36
LIG1-218ENST00000599322 ZNF512BQ96KM6 892 aaPredicted RBP17.29■□□□□ 0.36
LIG1-218ENST00000599322 CCDC8Q9H0W5 538 aaPredicted RBP17.29■□□□□ 0.36
LIG1-218ENST00000599322 APBB1O00213 710 aa17.28■□□□□ 0.36
LIG1-218ENST00000599322 BAG3O95817 575 aa17.28■□□□□ 0.36
LIG1-218ENST00000599322 ALDH1A1P00352 501 aa17.28■□□□□ 0.36
LIG1-218ENST00000599322 IFIT2P09913 472 aaKnown RBP17.28■□□□□ 0.36
LIG1-218ENST00000599322 MCAMP43121 646 aa17.28■□□□□ 0.36
LIG1-218ENST00000599322 MECOMQ03112 1051 aa17.28■□□□□ 0.36
LIG1-218ENST00000599322 TCP10Q12799 353 aa17.28■□□□□ 0.36
LIG1-218ENST00000599322 SPRYD7Q5W111 196 aa17.28■□□□□ 0.36
LIG1-218ENST00000599322 ZSCAN29Q8IWY8 852 aaPredicted RBP17.28■□□□□ 0.36
LIG1-218ENST00000599322 RHPN1Q8TCX5 695 aa17.28■□□□□ 0.36
LIG1-218ENST00000599322 TEPSINQ96N21 525 aa17.28■□□□□ 0.36
LIG1-218ENST00000599322 BCL11AQ9H165 835 aa17.28■□□□□ 0.36
LIG1-218ENST00000599322 SNRKQ9NRH2 765 aa17.28■□□□□ 0.36
LIG1-218ENST00000599322 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.28■□□□□ 0.36
LIG1-218ENST00000599322 MROH7-TTC4A0A0A0MT08 1334 aa17.27■□□□□ 0.36
LIG1-218ENST00000599322 BTDP43251 543 aa17.27■□□□□ 0.36
LIG1-218ENST00000599322 TBC1D9Q6ZT07 1266 aa17.27■□□□□ 0.36
LIG1-218ENST00000599322 EAF2Q96CJ1 260 aaPredicted RBP17.27■□□□□ 0.36
LIG1-218ENST00000599322 ZNF341Q9BYN7 854 aa17.27■□□□□ 0.36
LIG1-218ENST00000599322 FZD1Q9UP38 647 aa17.27■□□□□ 0.36
LIG1-218ENST00000599322 GAKO14976 1311 aa17.26■□□□□ 0.35
LIG1-218ENST00000599322 ENTPD3O75355 529 aa17.26■□□□□ 0.35
LIG1-218ENST00000599322 WDHD1O75717 1129 aaPredicted RBP17.26■□□□□ 0.35
LIG1-218ENST00000599322 PLCG2P16885 1265 aa17.26■□□□□ 0.35
LIG1-218ENST00000599322 TM4SF4P48230 202 aa17.26■□□□□ 0.35
LIG1-218ENST00000599322 NAA16Q6N069 864 aaPredicted RBP17.26■□□□□ 0.35
LIG1-218ENST00000599322 WNK4Q96J92 1243 aa17.26■□□□□ 0.35
LIG1-218ENST00000599322 ELP3Q9H9T3 547 aa17.26■□□□□ 0.35
LIG1-218ENST00000599322 IL1RAPL2Q9NP60 686 aa17.26■□□□□ 0.35
LIG1-218ENST00000599322 DBNLQ9UJU6 430 aaKnown RBP17.26■□□□□ 0.35
LIG1-218ENST00000599322 RPAP1Q9BWH6 1393 aaPredicted RBP17.26■□□□□ 0.35
LIG1-218ENST00000599322 GPR75-ASB3A0A0A6YYF3 556 aa17.25■□□□□ 0.35
LIG1-218ENST00000599322 C20orf194Q5TEA3 1177 aa17.25■□□□□ 0.35
LIG1-218ENST00000599322 PI16Q6UXB8 463 aa17.25■□□□□ 0.35
LIG1-218ENST00000599322 NSUN4Q96CB9 384 aaKnown RBP17.25■□□□□ 0.35
LIG1-218ENST00000599322 CLMNQ96JQ2 1002 aa17.25■□□□□ 0.35
LIG1-218ENST00000599322 WRNIP1Q96S55 665 aa17.25■□□□□ 0.35
LIG1-218ENST00000599322 IDI2Q9BXS1 227 aa17.25■□□□□ 0.35
LIG1-218ENST00000599322 OTOFQ9HC10 1997 aa17.24■□□□□ 0.35
LIG1-218ENST00000599322 RGS3P49796 1198 aa17.24■□□□□ 0.35
LIG1-218ENST00000599322 PICALMQ13492 652 aa17.24■□□□□ 0.35
LIG1-218ENST00000599322 TTF1Q15361 905 aaPredicted RBP17.24■□□□□ 0.35
LIG1-218ENST00000599322 ZAP70P43403 619 aa17.23■□□□□ 0.35
LIG1-218ENST00000599322 MAP3K12Q12852 859 aa17.23■□□□□ 0.35
LIG1-218ENST00000599322 NFIAQ12857 509 aa17.23■□□□□ 0.35
LIG1-218ENST00000599322 TMED8Q6PL24 325 aaPredicted RBP17.23■□□□□ 0.35
LIG1-218ENST00000599322 MIGA2Q7L4E1 593 aa17.23■□□□□ 0.35
LIG1-218ENST00000599322 CTU1Q7Z7A3 348 aaKnown RBP17.23■□□□□ 0.35
LIG1-218ENST00000599322 CERS3Q8IU89 383 aa17.23■□□□□ 0.35
LIG1-218ENST00000599322 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.23■□□□□ 0.35
LIG1-218ENST00000599322 OPTNQ96CV9 577 aa17.23■□□□□ 0.35
LIG1-218ENST00000599322 ZBTB47Q9UFB7 747 aaPredicted RBP17.23■□□□□ 0.35
LIG1-218ENST00000599322 SSC5DA1L4H1 1573 aa17.23■□□□□ 0.35
LIG1-218ENST00000599322 IDH1O75874 414 aaKnown RBP17.22■□□□□ 0.35
LIG1-218ENST00000599322 TBC1D8O95759 1140 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms