RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 RGMBQ6NW40 437 aa16.94■□□□□ 0.3
UPF1-205ENST00000598209 CDC42EP5Q6NZY7 148 aa16.94■□□□□ 0.3
UPF1-205ENST00000598209 MROH7-TTC4A0A0A0MT08 1334 aa16.94■□□□□ 0.3
UPF1-205ENST00000598209 SMARCA5O60264 1052 aaPredicted RBP16.93■□□□□ 0.3
UPF1-205ENST00000598209 GSTO1P78417 241 aa16.93■□□□□ 0.3
UPF1-205ENST00000598209 FKBP1CQ5VVH2 108 aa16.93■□□□□ 0.3
UPF1-205ENST00000598209 ARMC9Q7Z3E5 817 aa16.93■□□□□ 0.3
UPF1-205ENST00000598209 ZNF384Q8TF68 577 aa16.93■□□□□ 0.3
UPF1-205ENST00000598209 NSUN4Q96CB9 384 aaKnown RBP16.93■□□□□ 0.3
UPF1-205ENST00000598209 FAM163AQ96GL9 167 aaPredicted RBP16.93■□□□□ 0.3
UPF1-205ENST00000598209 TMEM39BQ9GZU3 492 aa16.93■□□□□ 0.3
UPF1-205ENST00000598209 USP40Q9NVE5 1235 aa16.93■□□□□ 0.3
UPF1-205ENST00000598209 OTOFQ9HC10 1997 aa16.92■□□□□ 0.3
UPF1-205ENST00000598209 AOC2O75106 756 aa16.92■□□□□ 0.3
UPF1-205ENST00000598209 LDHCP07864 332 aa16.92■□□□□ 0.3
UPF1-205ENST00000598209 ZNF157P51786 506 aaPredicted RBP16.92■□□□□ 0.3
UPF1-205ENST00000598209 FAM83AQ86UY5 434 aa16.92■□□□□ 0.3
UPF1-205ENST00000598209 CDAN1Q8IWY9 1227 aa16.92■□□□□ 0.3
UPF1-205ENST00000598209 TEPSINQ96N21 525 aa16.92■□□□□ 0.3
UPF1-205ENST00000598209 PIH1D3Q9NQM4 214 aaKnown RBP16.92■□□□□ 0.3
UPF1-205ENST00000598209 ANGEL1Q9UNK9 670 aaKnown RBP16.92■□□□□ 0.3
UPF1-205ENST00000598209 FZD1Q9UP38 647 aa16.92■□□□□ 0.3
UPF1-205ENST00000598209 NDUFB9Q9Y6M9 179 aa16.92■□□□□ 0.3
UPF1-205ENST00000598209 PPP1R12BO60237 982 aaPredicted RBP16.91■□□□□ 0.3
UPF1-205ENST00000598209 BTDP43251 543 aa16.91■□□□□ 0.3
UPF1-205ENST00000598209 CCDC102AQ96A19 550 aa16.91■□□□□ 0.3
UPF1-205ENST00000598209 CDK5RAP2Q96SN8 1893 aa16.9■□□□□ 0.3
UPF1-205ENST00000598209 GPR75-ASB3A0A0A6YYF3 556 aa16.9■□□□□ 0.3
UPF1-205ENST00000598209 FAM155AB1AL88 458 aaPredicted RBP16.9■□□□□ 0.3
UPF1-205ENST00000598209 HSPA1AP0DMV8 641 aaKnown RBP16.9■□□□□ 0.3
UPF1-205ENST00000598209 HSPA1BP0DMV9 641 aaKnown RBP16.9■□□□□ 0.3
UPF1-205ENST00000598209 MAP2K2P36507 400 aa16.9■□□□□ 0.3
UPF1-205ENST00000598209 NFIAQ12857 509 aa16.9■□□□□ 0.3
UPF1-205ENST00000598209 AAMPQ13685 434 aa16.9■□□□□ 0.3
UPF1-205ENST00000598209 NAA16Q6N069 864 aaPredicted RBP16.9■□□□□ 0.3
UPF1-205ENST00000598209 EXOC6Q8TAG9 804 aa16.9■□□□□ 0.3
UPF1-205ENST00000598209 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.9■□□□□ 0.3
UPF1-205ENST00000598209 RPAP1Q9BWH6 1393 aaPredicted RBP16.89■□□□□ 0.3
UPF1-205ENST00000598209 SLC10A3P09131 477 aa16.89■□□□□ 0.29
UPF1-205ENST00000598209 TCP10Q12799 353 aa16.89■□□□□ 0.29
UPF1-205ENST00000598209 NOGQ13253 232 aa16.89■□□□□ 0.29
UPF1-205ENST00000598209 MAP3K11Q16584 847 aa16.89■□□□□ 0.29
UPF1-205ENST00000598209 LDLRAD1Q5T700 205 aa16.89■□□□□ 0.29
UPF1-205ENST00000598209 RASAL3Q86YV0 1011 aa16.89■□□□□ 0.29
UPF1-205ENST00000598209 FAM151AQ8WW52 585 aa16.89■□□□□ 0.29
UPF1-205ENST00000598209 ANTXR1Q9H6X2 564 aa16.89■□□□□ 0.29
UPF1-205ENST00000598209 FAM198AQ9UFP1 575 aa16.89■□□□□ 0.29
UPF1-205ENST00000598209 PCNTO95613 3336 aa16.89■□□□□ 0.29
UPF1-205ENST00000598209 MYH7P12883 1935 aa16.88■□□□□ 0.29
UPF1-205ENST00000598209 IGSF3O75054 1194 aa16.88■□□□□ 0.29
UPF1-205ENST00000598209 USP2O75604 605 aaPredicted RBP16.88■□□□□ 0.29
UPF1-205ENST00000598209 IDH1O75874 414 aaKnown RBP16.88■□□□□ 0.29
UPF1-205ENST00000598209 IREB2P48200 963 aaKnown RBP16.88■□□□□ 0.29
UPF1-205ENST00000598209 MAP2K1Q02750 393 aaPredicted RBP16.88■□□□□ 0.29
UPF1-205ENST00000598209 ZIC5Q96T25 663 aa16.88■□□□□ 0.29
UPF1-205ENST00000598209 DNAJC2Q99543 621 aaKnown RBP16.88■□□□□ 0.29
UPF1-205ENST00000598209 IDI2Q9BXS1 227 aa16.88■□□□□ 0.29
UPF1-205ENST00000598209 FOCADQ5VW36 1801 aa16.88■□□□□ 0.29
UPF1-205ENST00000598209 RFX7Q2KHR2 1363 aa16.88■□□□□ 0.29
UPF1-205ENST00000598209 WDHD1O75717 1129 aaPredicted RBP16.87■□□□□ 0.29
UPF1-205ENST00000598209 ATP5JP18859 108 aa16.87■□□□□ 0.29
UPF1-205ENST00000598209 RGS3P49796 1198 aa16.87■□□□□ 0.29
UPF1-205ENST00000598209 RHBDL3P58872 404 aa16.87■□□□□ 0.29
UPF1-205ENST00000598209 HDAC1Q13547 482 aaPredicted RBP16.87■□□□□ 0.29
UPF1-205ENST00000598209 TTF1Q15361 905 aaPredicted RBP16.87■□□□□ 0.29
UPF1-205ENST00000598209 NOL10Q9BSC4 688 aaKnown RBP16.87■□□□□ 0.29
UPF1-205ENST00000598209 BOLA2Q9H3K6 86 aa16.87■□□□□ 0.29
UPF1-205ENST00000598209 WBP1LQ9NX94 342 aa16.87■□□□□ 0.29
UPF1-205ENST00000598209 ENTPD3O75355 529 aa16.86■□□□□ 0.29
UPF1-205ENST00000598209 MAP4K4O95819 1239 aaPredicted RBP16.86■□□□□ 0.29
UPF1-205ENST00000598209 MAP3K12Q12852 859 aa16.86■□□□□ 0.29
UPF1-205ENST00000598209 ADGRA1Q86SQ6 560 aa16.86■□□□□ 0.29
UPF1-205ENST00000598209 ZFPM1Q8IX07 1006 aa16.86■□□□□ 0.29
UPF1-205ENST00000598209 HOOK2Q96ED9 719 aa16.86■□□□□ 0.29
UPF1-205ENST00000598209 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.86■□□□□ 0.29
UPF1-205ENST00000598209 UNCXA6NJT0 531 aa16.85■□□□□ 0.29
UPF1-205ENST00000598209 GOLIM4O00461 696 aa16.85■□□□□ 0.29
UPF1-205ENST00000598209 BAG3O95817 575 aa16.85■□□□□ 0.29
UPF1-205ENST00000598209 CYP7A1P22680 504 aa16.85■□□□□ 0.29
UPF1-205ENST00000598209 KIF23Q02241 960 aaPredicted RBP16.85■□□□□ 0.29
UPF1-205ENST00000598209 PICALMQ13492 652 aa16.85■□□□□ 0.29
UPF1-205ENST00000598209 ANKRD13AQ8IZ07 590 aa16.85■□□□□ 0.29
UPF1-205ENST00000598209 MAGEB6Q8N7X4 407 aa16.85■□□□□ 0.29
UPF1-205ENST00000598209 AIDAQ96BJ3 306 aa16.85■□□□□ 0.29
UPF1-205ENST00000598209 SLC10A4Q96EP9 437 aa16.85■□□□□ 0.29
UPF1-205ENST00000598209 CLMNQ96JQ2 1002 aa16.85■□□□□ 0.29
UPF1-205ENST00000598209 DDX4Q9NQI0 724 aaKnown RBP16.85■□□□□ 0.29
UPF1-205ENST00000598209 AATFQ9NY61 560 aaKnown RBP eCLIP16.85■□□□□ 0.29
UPF1-205ENST00000598209 PPP4CP60510 307 aa16.84■□□□□ 0.29
UPF1-205ENST00000598209 DCAF15Q66K64 600 aa16.84■□□□□ 0.29
UPF1-205ENST00000598209 TEX11Q8IYF3 940 aa16.84■□□□□ 0.29
UPF1-205ENST00000598209 SH3RF3Q8TEJ3 882 aaPredicted RBP16.84■□□□□ 0.29
UPF1-205ENST00000598209 GCC1Q96CN9 775 aa16.84■□□□□ 0.29
UPF1-205ENST00000598209 EDC3Q96F86 508 aaKnown RBP16.84■□□□□ 0.29
UPF1-205ENST00000598209 HAUS7Q99871 368 aa16.84■□□□□ 0.29
UPF1-205ENST00000598209 ECHDC1Q9NTX5 307 aa16.84■□□□□ 0.29
UPF1-205ENST00000598209 PAG1Q9NWQ8 432 aa16.84■□□□□ 0.29
UPF1-205ENST00000598209 LAMB1P07942 1786 aa16.84■□□□□ 0.29
UPF1-205ENST00000598209 FOXN1O15353 648 aa16.83■□□□□ 0.28
UPF1-205ENST00000598209 NPM3O75607 178 aaKnown RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms