RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 KIF22Q14807 665 aa15.66■□□□□ 0.1
TRIM28-212ENST00000597995 SLC9C1Q4G0N8 1177 aa15.66■□□□□ 0.1
TRIM28-212ENST00000597995 KLHDC4Q8TBB5 520 aa15.66■□□□□ 0.1
TRIM28-212ENST00000597995 LPIN2Q92539 896 aa15.66■□□□□ 0.1
TRIM28-212ENST00000597995 ZKSCAN4Q969J2 545 aaPredicted RBP15.66■□□□□ 0.1
TRIM28-212ENST00000597995 ZNF341Q9BYN7 854 aa15.66■□□□□ 0.1
TRIM28-212ENST00000597995 PTCH2Q9Y6C5 1203 aa15.66■□□□□ 0.1
TRIM28-212ENST00000597995 BTBD19C9JJ37 291 aa15.65■□□□□ 0.1
TRIM28-212ENST00000597995 SLC5A1P13866 664 aa15.65■□□□□ 0.1
TRIM28-212ENST00000597995 RFX5P48382 616 aaPredicted RBP15.65■□□□□ 0.1
TRIM28-212ENST00000597995 PRMT2P55345 433 aa15.65■□□□□ 0.1
TRIM28-212ENST00000597995 PPATQ06203 517 aa15.65■□□□□ 0.1
TRIM28-212ENST00000597995 LACTBP83111 547 aaPredicted RBP15.64■□□□□ 0.09
TRIM28-212ENST00000597995 HABP4Q5JVS0 413 aaKnown RBP15.64■□□□□ 0.09
TRIM28-212ENST00000597995 MIER1Q8N108 512 aa15.64■□□□□ 0.09
TRIM28-212ENST00000597995 FAM151AQ8WW52 585 aa15.64■□□□□ 0.09
TRIM28-212ENST00000597995 FBXO3Q9UK99 471 aa15.64■□□□□ 0.09
TRIM28-212ENST00000597995 BRCA2P51587 3418 aa15.64■□□□□ 0.09
TRIM28-212ENST00000597995 SLC4A8Q2Y0W8 1093 aa15.63■□□□□ 0.09
TRIM28-212ENST00000597995 ZNF112Q9UJU3 913 aa15.63■□□□□ 0.09
TRIM28-212ENST00000597995 ALDH1L2Q3SY69 923 aa15.62■□□□□ 0.09
TRIM28-212ENST00000597995 C17orf99Q6UX52 265 aa15.62■□□□□ 0.09
TRIM28-212ENST00000597995 MIGA2Q7L4E1 593 aa15.62■□□□□ 0.09
TRIM28-212ENST00000597995 ATG9AQ7Z3C6 839 aa15.62■□□□□ 0.09
TRIM28-212ENST00000597995 ANKRD23Q86SG2 305 aa15.62■□□□□ 0.09
TRIM28-212ENST00000597995 DAGLAQ9Y4D2 1042 aa15.62■□□□□ 0.09
TRIM28-212ENST00000597995 ZBTB22O15209 634 aa15.61■□□□□ 0.09
TRIM28-212ENST00000597995 CIAO1O76071 339 aa15.61■□□□□ 0.09
TRIM28-212ENST00000597995 INPP5BP32019 993 aa15.61■□□□□ 0.09
TRIM28-212ENST00000597995 CDC42EP5Q6NZY7 148 aa15.61■□□□□ 0.09
TRIM28-212ENST00000597995 ARHGAP39Q9C0H5 1083 aa15.61■□□□□ 0.09
TRIM28-212ENST00000597995 GNL3LQ9NVN8 582 aaKnown RBP15.61■□□□□ 0.09
TRIM28-212ENST00000597995 KCNH4Q9UQ05 1017 aa15.61■□□□□ 0.09
TRIM28-212ENST00000597995 SEMA3EO15041 775 aa15.6■□□□□ 0.09
TRIM28-212ENST00000597995 HOXD10P28358 340 aa15.6■□□□□ 0.09
TRIM28-212ENST00000597995 NOL9Q5SY16 702 aaKnown RBP15.6■□□□□ 0.09
TRIM28-212ENST00000597995 DIEXFQ68CQ4 756 aaKnown RBP15.6■□□□□ 0.09
TRIM28-212ENST00000597995 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.6■□□□□ 0.09
TRIM28-212ENST00000597995 CEP126Q9P2H0 1117 aa15.6■□□□□ 0.09
TRIM28-212ENST00000597995 SALL1Q9NSC2 1324 aa15.6■□□□□ 0.09
TRIM28-212ENST00000597995 MYH13Q9UKX3 1938 aa15.59■□□□□ 0.09
TRIM28-212ENST00000597995 PDHXO00330 501 aa15.59■□□□□ 0.09
TRIM28-212ENST00000597995 LDHBP07195 334 aaKnown RBP15.59■□□□□ 0.09
TRIM28-212ENST00000597995 PRDX5P30044 214 aa15.59■□□□□ 0.09
TRIM28-212ENST00000597995 TCP10Q12799 353 aa15.59■□□□□ 0.09
TRIM28-212ENST00000597995 DIXDC1Q155Q3 683 aa15.59■□□□□ 0.09
TRIM28-212ENST00000597995 ATP2B3Q16720 1220 aa15.59■□□□□ 0.09
TRIM28-212ENST00000597995 SH3TC2Q8TF17 1288 aa15.59■□□□□ 0.09
TRIM28-212ENST00000597995 DENND2AQ9ULE3 1009 aa15.59■□□□□ 0.09
TRIM28-212ENST00000597995 HDAC5Q9UQL6 1122 aa15.59■□□□□ 0.09
TRIM28-212ENST00000597995 UBTFL1P0CB47 393 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-212ENST00000597995 NFIAQ12857 509 aa15.58■□□□□ 0.08
TRIM28-212ENST00000597995 MOGSQ13724 837 aa15.58■□□□□ 0.08
TRIM28-212ENST00000597995 SMC4Q9NTJ3 1288 aa15.58■□□□□ 0.08
TRIM28-212ENST00000597995 USP40Q9NVE5 1235 aa15.58■□□□□ 0.08
TRIM28-212ENST00000597995 FAM198AQ9UFP1 575 aa15.58■□□□□ 0.08
TRIM28-212ENST00000597995 SRRDQ9UH36 339 aa15.58■□□□□ 0.08
TRIM28-212ENST00000597995 CPA4Q9UI42 421 aa15.58■□□□□ 0.08
TRIM28-212ENST00000597995 ADGRA2Q96PE1 1338 aa15.58■□□□□ 0.08
TRIM28-212ENST00000597995 AK9Q5TCS8 1911 aa15.57■□□□□ 0.08
TRIM28-212ENST00000597995 CXCL11O14625 94 aa15.57■□□□□ 0.08
TRIM28-212ENST00000597995 CT47B1P0C2W7 299 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-212ENST00000597995 IL15P40933 162 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-212ENST00000597995 PSMC4P43686 418 aa15.57■□□□□ 0.08
TRIM28-212ENST00000597995 ZGPATQ8N5A5 531 aaKnown RBP15.57■□□□□ 0.08
TRIM28-212ENST00000597995 ENTPD3O75355 529 aa15.56■□□□□ 0.08
TRIM28-212ENST00000597995 MYCP01106 439 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-212ENST00000597995 CTGFP29279 349 aa15.56■□□□□ 0.08
TRIM28-212ENST00000597995 TRIM47Q96LD4 638 aa15.56■□□□□ 0.08
TRIM28-212ENST00000597995 IDI2Q9BXS1 227 aa15.56■□□□□ 0.08
TRIM28-212ENST00000597995 SIL1Q9H173 461 aa15.56■□□□□ 0.08
TRIM28-212ENST00000597995 NOB1Q9ULX3 412 aaKnown RBP15.56■□□□□ 0.08
TRIM28-212ENST00000597995 ZSWIM8A7E2V4 1837 aa15.55■□□□□ 0.08
TRIM28-212ENST00000597995 FMNL1O95466 1100 aaPredicted RBP15.55■□□□□ 0.08
TRIM28-212ENST00000597995 OSBPP22059 807 aa15.55■□□□□ 0.08
TRIM28-212ENST00000597995 GRK4P32298 578 aa15.55■□□□□ 0.08
TRIM28-212ENST00000597995 PHKA1P46020 1223 aa15.55■□□□□ 0.08
TRIM28-212ENST00000597995 RARSP54136 660 aaKnown RBP15.55■□□□□ 0.08
TRIM28-212ENST00000597995 MAP3K10Q02779 954 aa15.55■□□□□ 0.08
TRIM28-212ENST00000597995 GPAT2Q6NUI2 795 aa15.55■□□□□ 0.08
TRIM28-212ENST00000597995 NKX2-3Q8TAU0 364 aa15.55■□□□□ 0.08
TRIM28-212ENST00000597995 RAET1EQ8TD07 263 aa15.55■□□□□ 0.08
TRIM28-212ENST00000597995 FAM163AQ96GL9 167 aaPredicted RBP15.55■□□□□ 0.08
TRIM28-212ENST00000597995 PARK7Q99497 189 aaKnown RBP15.55■□□□□ 0.08
TRIM28-212ENST00000597995 COPRSQ9NQ92 184 aa15.55■□□□□ 0.08
TRIM28-212ENST00000597995 ATRNL1Q5VV63 1379 aa15.54■□□□□ 0.08
TRIM28-212ENST00000597995 GAKO14976 1311 aa15.54■□□□□ 0.08
TRIM28-212ENST00000597995 PDS5AQ29RF7 1337 aaKnown RBP15.54■□□□□ 0.08
TRIM28-212ENST00000597995 PHF20L1A8MW92 1017 aa15.54■□□□□ 0.08
TRIM28-212ENST00000597995 BCRP11274 1271 aa15.54■□□□□ 0.08
TRIM28-212ENST00000597995 RGS3P49796 1198 aa15.54■□□□□ 0.08
TRIM28-212ENST00000597995 FXR1P51114 621 aaKnown RBP eCLIP15.54■□□□□ 0.089e-8■□□□□ 9
TRIM28-212ENST00000597995 CCDC102BQ68D86 513 aa15.54■□□□□ 0.08
TRIM28-212ENST00000597995 FASTKD5Q7L8L6 764 aaKnown RBP15.54■□□□□ 0.08
TRIM28-212ENST00000597995 ZFPM1Q8IX07 1006 aa15.54■□□□□ 0.08
TRIM28-212ENST00000597995 SLF2Q8IX21 1173 aa15.54■□□□□ 0.08
TRIM28-212ENST00000597995 SCYL3Q8IZE3 742 aa15.54■□□□□ 0.08
TRIM28-212ENST00000597995 API5Q9BZZ5 524 aaKnown RBP15.54■□□□□ 0.08
TRIM28-212ENST00000597995 COLQQ9Y215 455 aaPredicted RBP15.54■□□□□ 0.08
TRIM28-212ENST00000597995 MYPNQ86TC9 1320 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms