RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SYMPKQ92797 1274 aaKnown RBP11.57□□□□□ -0.56
TRIM28-208ENST00000597172 CCDC8Q9H0W5 538 aaPredicted RBP11.57□□□□□ -0.56
TRIM28-208ENST00000597172 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.57□□□□□ -0.56
TRIM28-208ENST00000597172 FPGT-TNNI3KV9GXZ4 949 aa11.57□□□□□ -0.56
TRIM28-208ENST00000597172 PRUNE2Q8WUY3 3088 aa11.56□□□□□ -0.56
TRIM28-208ENST00000597172 A0A1B0GUL7 405 aa11.56□□□□□ -0.56
TRIM28-208ENST00000597172 RGS3P49796 1198 aa11.56□□□□□ -0.56
TRIM28-208ENST00000597172 BCAMP50895 628 aa11.56□□□□□ -0.56
TRIM28-208ENST00000597172 AACSQ86V21 672 aa11.56□□□□□ -0.56
TRIM28-208ENST00000597172 GDF15Q99988 308 aa11.56□□□□□ -0.56
TRIM28-208ENST00000597172 MYOZ2Q9NPC6 264 aa11.56□□□□□ -0.56
TRIM28-208ENST00000597172 TLR7Q9NYK1 1049 aaKnown RBP11.56□□□□□ -0.56
TRIM28-208ENST00000597172 ZBTB47Q9UFB7 747 aaPredicted RBP11.56□□□□□ -0.56
TRIM28-208ENST00000597172 ANGEL1Q9UNK9 670 aaKnown RBP11.56□□□□□ -0.56
TRIM28-208ENST00000597172 BDP1A6H8Y1 2624 aa11.56□□□□□ -0.56
TRIM28-208ENST00000597172 C6orf229H3BNL8 230 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 ADORA1P30542 326 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 GJA8P48165 433 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 PDE1AP54750 535 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 GPSM2P81274 684 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 TMC4Q7Z404 712 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 AGBL3Q8NEM8 1001 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 WNK4Q96J92 1243 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 NEUROD6Q96NK8 337 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 DBNDD2Q9BQY9 259 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 ANKRD2Q9GZV1 360 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 OSBPL3Q9H4L5 887 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 DBNLQ9UJU6 430 aaKnown RBP11.55□□□□□ -0.56
TRIM28-208ENST00000597172 NSFL1CQ9UNZ2 370 aaKnown RBP11.55□□□□□ -0.56
TRIM28-208ENST00000597172 AKAP2Q9Y2D5 859 aa11.55□□□□□ -0.56
TRIM28-208ENST00000597172 FARP2O94887 1054 aaPredicted RBP11.54□□□□□ -0.56
TRIM28-208ENST00000597172 GJB1P08034 283 aa11.54□□□□□ -0.56
TRIM28-208ENST00000597172 IFIT2P09913 472 aaKnown RBP11.54□□□□□ -0.56
TRIM28-208ENST00000597172 USP17L8P0C7I0 530 aa11.54□□□□□ -0.56
TRIM28-208ENST00000597172 UBE4AQ14139 1066 aa11.54□□□□□ -0.56
TRIM28-208ENST00000597172 PUM3Q15397 648 aaKnown RBP11.54□□□□□ -0.56
TRIM28-208ENST00000597172 ATP2B3Q16720 1220 aa11.54□□□□□ -0.56
TRIM28-208ENST00000597172 TSHZ3Q63HK5 1081 aa11.54□□□□□ -0.56
TRIM28-208ENST00000597172 RSBN1LQ6PCB5 846 aaPredicted RBP11.54□□□□□ -0.56
TRIM28-208ENST00000597172 LPIN2Q92539 896 aa11.54□□□□□ -0.56
TRIM28-208ENST00000597172 XAGE2Q96GT9 111 aa11.54□□□□□ -0.56
TRIM28-208ENST00000597172 GUCD1Q96NT3 240 aa11.54□□□□□ -0.56
TRIM28-208ENST00000597172 PODXL2Q9NZ53 605 aa11.54□□□□□ -0.56
TRIM28-208ENST00000597172 DUOX1Q9NRD9 1551 aa11.54□□□□□ -0.56
TRIM28-208ENST00000597172 LAMA2P24043 3122 aaKnown RBP11.53□□□□□ -0.56
TRIM28-208ENST00000597172 MX1P20591 662 aa11.53□□□□□ -0.56
TRIM28-208ENST00000597172 NBPF9Q3BBW0 867 aa11.53□□□□□ -0.56
TRIM28-208ENST00000597172 EYA3Q99504 573 aa11.53□□□□□ -0.56
TRIM28-208ENST00000597172 PTPN18Q99952 460 aa11.53□□□□□ -0.56
TRIM28-208ENST00000597172 POLLQ9UGP5 575 aa11.53□□□□□ -0.56
TRIM28-208ENST00000597172 SCN9AQ15858 1988 aa11.53□□□□□ -0.56
TRIM28-208ENST00000597172 IRS2Q9Y4H2 1338 aa11.53□□□□□ -0.56
TRIM28-208ENST00000597172 SPEF2Q9C093 1822 aa11.53□□□□□ -0.56
TRIM28-208ENST00000597172 ZNF646O15015 1829 aaPredicted RBP11.52□□□□□ -0.57
TRIM28-208ENST00000597172 TMEM265A0A087WTH1 108 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 G3V3G9 751 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 TNFRSF10AO00220 468 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 KLRK1P26718 216 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 DCAF8Q5TAQ9 597 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 TXNRD3Q86VQ6 643 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 PI4K2BQ8TCG2 481 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 CLMNQ96JQ2 1002 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 GMLQ99445 158 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 ECHDC1Q9NTX5 307 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 ANKIB1Q9P2G1 1089 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 LEMD3Q9Y2U8 911 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 ZNF804BA4D1E1 1349 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 XDHP47989 1333 aa11.52□□□□□ -0.57
TRIM28-208ENST00000597172 IFIT1P09914 478 aaKnown RBP11.51□□□□□ -0.57
TRIM28-208ENST00000597172 CCL5P13501 91 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 SLC5A1P13866 664 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 ATP5JP18859 108 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 ATP2B4P23634 1241 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 PRMT2P55345 433 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 FBXO33Q7Z6M2 555 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 TDHQ8IZJ6 230 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 TBC1D16Q8TBP0 767 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 FAM84BQ96KN1 310 aaPredicted RBP11.51□□□□□ -0.57
TRIM28-208ENST00000597172 ZC3H12CQ9C0D7 883 aaKnown RBP11.51□□□□□ -0.57
TRIM28-208ENST00000597172 ZFYVE28Q9HCC9 887 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 FZD1Q9UP38 647 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 MUC6Q6W4X9 2439 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 TTC41PQ6P2S7 1318 aa11.51□□□□□ -0.57
TRIM28-208ENST00000597172 TESPA1A2RU30 521 aaPredicted RBP11.5□□□□□ -0.57
TRIM28-208ENST00000597172 GSPT1P15170 499 aaKnown RBP11.5□□□□□ -0.57
TRIM28-208ENST00000597172 PHKA1P46020 1223 aa11.5□□□□□ -0.57
TRIM28-208ENST00000597172 MAP3K12Q12852 859 aa11.5□□□□□ -0.57
TRIM28-208ENST00000597172 KIF22Q14807 665 aa11.5□□□□□ -0.57
TRIM28-208ENST00000597172 TTC22Q5TAA0 569 aa11.5□□□□□ -0.57
TRIM28-208ENST00000597172 CCDC102BQ68D86 513 aa11.5□□□□□ -0.57
TRIM28-208ENST00000597172 FAM109BQ6ICB4 259 aaPredicted RBP11.5□□□□□ -0.57
TRIM28-208ENST00000597172 C15orf52Q6ZUT6 534 aaKnown RBP11.5□□□□□ -0.57
TRIM28-208ENST00000597172 RNF208Q9H0X6 261 aa11.5□□□□□ -0.57
TRIM28-208ENST00000597172 GGA1Q9UJY5 639 aa11.5□□□□□ -0.57
TRIM28-208ENST00000597172 AOX1Q06278 1338 aa11.5□□□□□ -0.57
TRIM28-208ENST00000597172 EYSQ5T1H1 3165 aa11.5□□□□□ -0.57
TRIM28-208ENST00000597172 LRRC37AA6NMS7 1700 aa11.49□□□□□ -0.57
TRIM28-208ENST00000597172 POTEB2H3BUK9 544 aa11.49□□□□□ -0.57
TRIM28-208ENST00000597172 UFL1O94874 794 aa11.49□□□□□ -0.57
TRIM28-208ENST00000597172 GNRH1P01148 92 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms