RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 SREBF2Q12772 1141 aa16.15■□□□□ 0.18
LIG1-212ENST00000596549 MVPQ14764 893 aaKnown RBP16.15■□□□□ 0.18
LIG1-212ENST00000596549 FKBP1CQ5VVH2 108 aa16.15■□□□□ 0.18
LIG1-212ENST00000596549 PI16Q6UXB8 463 aa16.15■□□□□ 0.18
LIG1-212ENST00000596549 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.15■□□□□ 0.18
LIG1-212ENST00000596549 TMOD2Q9NZR1 351 aa16.15■□□□□ 0.18
LIG1-212ENST00000596549 GAKO14976 1311 aa16.15■□□□□ 0.18
LIG1-212ENST00000596549 TBC1D8O95759 1140 aa16.14■□□□□ 0.17
LIG1-212ENST00000596549 NFIAQ12857 509 aa16.14■□□□□ 0.17
LIG1-212ENST00000596549 DGKZQ13574 1117 aa16.14■□□□□ 0.17
LIG1-212ENST00000596549 VGLL4Q14135 290 aa16.14■□□□□ 0.17
LIG1-212ENST00000596549 CDC42EP5Q6NZY7 148 aa16.14■□□□□ 0.17
LIG1-212ENST00000596549 PANK1Q8TE04 598 aa16.14■□□□□ 0.17
LIG1-212ENST00000596549 ZNF384Q8TF68 577 aa16.14■□□□□ 0.17
LIG1-212ENST00000596549 CNKSR2Q8WXI2 1034 aa16.14■□□□□ 0.17
LIG1-212ENST00000596549 SLC10A4Q96EP9 437 aa16.14■□□□□ 0.17
LIG1-212ENST00000596549 ELP3Q9H9T3 547 aa16.14■□□□□ 0.17
LIG1-212ENST00000596549 MANSC4A6NHS7 340 aaPredicted RBP16.13■□□□□ 0.17
LIG1-212ENST00000596549 IGF2BP3O00425 579 aaKnown RBP eCLIP16.13■□□□□ 0.17
LIG1-212ENST00000596549 ARID4AP29374 1257 aaPredicted RBP16.13■□□□□ 0.17
LIG1-212ENST00000596549 ATP8B2P98198 1209 aa16.13■□□□□ 0.17
LIG1-212ENST00000596549 OPTNQ96CV9 577 aa16.13■□□□□ 0.17
LIG1-212ENST00000596549 NEUROD6Q96NK8 337 aa16.13■□□□□ 0.17
LIG1-212ENST00000596549 CFHR5Q9BXR6 569 aa16.13■□□□□ 0.17
LIG1-212ENST00000596549 R3HDMLQ9H3Y0 253 aa16.13■□□□□ 0.17
LIG1-212ENST00000596549 HMG20BQ9P0W2 317 aa16.13■□□□□ 0.17
LIG1-212ENST00000596549 FAM198AQ9UFP1 575 aa16.13■□□□□ 0.17
LIG1-212ENST00000596549 ATRNL1Q5VV63 1379 aa16.13■□□□□ 0.17
LIG1-212ENST00000596549 MCAMP43121 646 aa16.12■□□□□ 0.17
LIG1-212ENST00000596549 G3BP1Q13283 466 aaKnown RBP eCLIP16.12■□□□□ 0.17
LIG1-212ENST00000596549 CEP85Q6P2H3 762 aa16.12■□□□□ 0.17
LIG1-212ENST00000596549 ZGPATQ8N5A5 531 aaKnown RBP16.12■□□□□ 0.17
LIG1-212ENST00000596549 ZNF296Q8WUU4 475 aaPredicted RBP16.12■□□□□ 0.17
LIG1-212ENST00000596549 ABCF2Q9UG63 623 aa16.12■□□□□ 0.17
LIG1-212ENST00000596549 SNCAIPQ9Y6H5 919 aa16.12■□□□□ 0.17
LIG1-212ENST00000596549 TCP10Q12799 353 aa16.11■□□□□ 0.17
LIG1-212ENST00000596549 TNNI3KQ59H18 835 aa16.11■□□□□ 0.17
LIG1-212ENST00000596549 DZIP1Q86YF9 867 aaKnown RBP16.11■□□□□ 0.17
LIG1-212ENST00000596549 IFNL1Q8IU54 200 aa16.11■□□□□ 0.17
LIG1-212ENST00000596549 FAM151AQ8WW52 585 aa16.11■□□□□ 0.17
LIG1-212ENST00000596549 FPGT-TNNI3KV9GXZ4 949 aa16.11■□□□□ 0.17
LIG1-212ENST00000596549 MROH7-TTC4A0A0A0MT08 1334 aa16.11■□□□□ 0.17
LIG1-212ENST00000596549 DDX60LQ5H9U9 1706 aaKnown RBP16.11■□□□□ 0.17
LIG1-212ENST00000596549 NOM1Q5C9Z4 860 aaKnown RBP16.1■□□□□ 0.17
LIG1-212ENST00000596549 SPATA5Q8NB90 893 aa16.1■□□□□ 0.17
LIG1-212ENST00000596549 WRNIP1Q96S55 665 aa16.1■□□□□ 0.17
LIG1-212ENST00000596549 DBNDD2Q9BQY9 259 aa16.1■□□□□ 0.17
LIG1-212ENST00000596549 GPR108Q9NPR9 543 aa16.1■□□□□ 0.17
LIG1-212ENST00000596549 NOP58Q9Y2X3 529 aaKnown RBP16.1■□□□□ 0.17
LIG1-212ENST00000596549 TESPA1A2RU30 521 aaPredicted RBP16.09■□□□□ 0.17
LIG1-212ENST00000596549 SPDYE5A6NIY4 337 aa16.09■□□□□ 0.17
LIG1-212ENST00000596549 GPR25O00155 361 aa16.09■□□□□ 0.17
LIG1-212ENST00000596549 SURF6O75683 361 aaKnown RBP16.09■□□□□ 0.17
LIG1-212ENST00000596549 MAP3K9P80192 1104 aa16.09■□□□□ 0.17
LIG1-212ENST00000596549 MECOMQ03112 1051 aa16.09■□□□□ 0.17
LIG1-212ENST00000596549 ZFPM1Q8IX07 1006 aa16.09■□□□□ 0.17
LIG1-212ENST00000596549 OTUD5Q96G74 571 aa16.09■□□□□ 0.17
LIG1-212ENST00000596549 MS4A4AQ96JQ5 239 aa16.09■□□□□ 0.17
LIG1-212ENST00000596549 PTPN18Q99952 460 aa16.09■□□□□ 0.17
LIG1-212ENST00000596549 USP40Q9NVE5 1235 aa16.09■□□□□ 0.17
LIG1-212ENST00000596549 TLR7Q9NYK1 1049 aaKnown RBP16.09■□□□□ 0.17
LIG1-212ENST00000596549 WDHD1O75717 1129 aaPredicted RBP16.08■□□□□ 0.16
LIG1-212ENST00000596549 INPP5BP32019 993 aa16.08■□□□□ 0.16
LIG1-212ENST00000596549 BTDP43251 543 aa16.08■□□□□ 0.16
LIG1-212ENST00000596549 INHBEP58166 350 aa16.08■□□□□ 0.16
LIG1-212ENST00000596549 TBC1D9Q6ZT07 1266 aa16.08■□□□□ 0.16
LIG1-212ENST00000596549 MIGA2Q7L4E1 593 aa16.08■□□□□ 0.16
LIG1-212ENST00000596549 CTU1Q7Z7A3 348 aaKnown RBP16.08■□□□□ 0.16
LIG1-212ENST00000596549 ZKSCAN4Q969J2 545 aaPredicted RBP16.08■□□□□ 0.16
LIG1-212ENST00000596549 FAM163AQ96GL9 167 aaPredicted RBP16.08■□□□□ 0.16
LIG1-212ENST00000596549 IDI2Q9BXS1 227 aa16.08■□□□□ 0.16
LIG1-212ENST00000596549 DDX4Q9NQI0 724 aaKnown RBP16.08■□□□□ 0.16
LIG1-212ENST00000596549 DBNLQ9UJU6 430 aaKnown RBP16.08■□□□□ 0.16
LIG1-212ENST00000596549 CSADQ9Y600 493 aa16.08■□□□□ 0.16
LIG1-212ENST00000596549 ALDH1A1P00352 501 aa16.07■□□□□ 0.16
LIG1-212ENST00000596549 RGS3P49796 1198 aa16.07■□□□□ 0.16
LIG1-212ENST00000596549 RHBDL3P58872 404 aa16.07■□□□□ 0.16
LIG1-212ENST00000596549 OS9Q13438 667 aaPredicted RBP16.07■□□□□ 0.16
LIG1-212ENST00000596549 GORABQ5T7V8 394 aa16.07■□□□□ 0.16
LIG1-212ENST00000596549 ERICH6Q7L0X2 663 aa16.07■□□□□ 0.16
LIG1-212ENST00000596549 SH3BP5LQ7L8J4 393 aa16.07■□□□□ 0.16
LIG1-212ENST00000596549 BRI3BPQ8WY22 251 aa16.07■□□□□ 0.16
LIG1-212ENST00000596549 NSUN4Q96CB9 384 aaKnown RBP16.07■□□□□ 0.16
LIG1-212ENST00000596549 ZNF341Q9BYN7 854 aa16.07■□□□□ 0.16
LIG1-212ENST00000596549 COL2A1P02458 1487 aaPredicted RBP16.07■□□□□ 0.16
LIG1-212ENST00000596549 LOC285556D6RIA3 1793 aa16.07■□□□□ 0.16
LIG1-212ENST00000596549 RBBP6Q7Z6E9 1792 aaKnown RBP16.07■□□□□ 0.16
LIG1-212ENST00000596549 MYH1P12882 1939 aa16.06■□□□□ 0.16
LIG1-212ENST00000596549 MYH7P12883 1935 aa16.06■□□□□ 0.16
LIG1-212ENST00000596549 NAV1Q8NEY1 1877 aa16.06■□□□□ 0.16
LIG1-212ENST00000596549 CCDC85CA6NKD9 419 aa16.06■□□□□ 0.16
LIG1-212ENST00000596549 UQCRFS1P1P0C7P4 283 aa16.06■□□□□ 0.16
LIG1-212ENST00000596549 SLURP2P0DP57 97 aa16.06■□□□□ 0.16
LIG1-212ENST00000596549 CRHR2Q13324 411 aa16.06■□□□□ 0.16
LIG1-212ENST00000596549 DCAF15Q66K64 600 aa16.06■□□□□ 0.16
LIG1-212ENST00000596549 SPTY2D1Q68D10 685 aaPredicted RBP16.06■□□□□ 0.16
LIG1-212ENST00000596549 HOOK2Q96ED9 719 aa16.06■□□□□ 0.16
LIG1-212ENST00000596549 ZNF112Q9UJU3 913 aa16.06■□□□□ 0.16
LIG1-212ENST00000596549 RCAN3Q9UKA8 241 aa16.06■□□□□ 0.16
LIG1-212ENST00000596549 EXOC6BQ9Y2D4 811 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms