RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 PDE3AQ14432 1141 aa18.6■□□□□ 0.57
TRIM28-205ENST00000595028 MAP3K11Q16584 847 aa18.6■□□□□ 0.57
TRIM28-205ENST00000595028 NBPF12Q5TAG4 269 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-205ENST00000595028 ZBTB40Q9NUA8 1239 aa18.6■□□□□ 0.57
TRIM28-205ENST00000595028 FZD1Q9UP38 647 aa18.6■□□□□ 0.57
TRIM28-205ENST00000595028 RPAP1Q9BWH6 1393 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-205ENST00000595028 PPP1R12BO60237 982 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-205ENST00000595028 LDLRAD1Q5T700 205 aa18.59■□□□□ 0.57
TRIM28-205ENST00000595028 C20orf194Q5TEA3 1177 aa18.59■□□□□ 0.57
TRIM28-205ENST00000595028 FKBP1CQ5VVH2 108 aa18.59■□□□□ 0.57
TRIM28-205ENST00000595028 CDAN1Q8IWY9 1227 aa18.59■□□□□ 0.57
TRIM28-205ENST00000595028 TEPSINQ96N21 525 aa18.59■□□□□ 0.57
TRIM28-205ENST00000595028 TMEM39BQ9GZU3 492 aa18.59■□□□□ 0.57
TRIM28-205ENST00000595028 CHMP4BQ9H444 224 aaKnown RBP18.59■□□□□ 0.57
TRIM28-205ENST00000595028 HMG20BQ9P0W2 317 aa18.59■□□□□ 0.57
TRIM28-205ENST00000595028 PI16Q6UXB8 463 aa18.58■□□□□ 0.56
TRIM28-205ENST00000595028 DZIP1Q86YF9 867 aaKnown RBP18.58■□□□□ 0.56
TRIM28-205ENST00000595028 SPATA5Q8NB90 893 aa18.58■□□□□ 0.56
TRIM28-205ENST00000595028 DBNDD2Q9BQY9 259 aa18.58■□□□□ 0.56
TRIM28-205ENST00000595028 ABCF2Q9UG63 623 aa18.58■□□□□ 0.56
TRIM28-205ENST00000595028 EXOC6BQ9Y2D4 811 aa18.58■□□□□ 0.56
TRIM28-205ENST00000595028 GAKO14976 1311 aa18.57■□□□□ 0.56
TRIM28-205ENST00000595028 UQCRFS1P1P0C7P4 283 aa18.57■□□□□ 0.56
TRIM28-205ENST00000595028 MCAMP43121 646 aa18.57■□□□□ 0.56
TRIM28-205ENST00000595028 SPTY2D1Q68D10 685 aaPredicted RBP18.57■□□□□ 0.56
TRIM28-205ENST00000595028 FAM83AQ86UY5 434 aa18.57■□□□□ 0.56
TRIM28-205ENST00000595028 RPAP2Q8IXW5 612 aaPredicted RBP18.57■□□□□ 0.56
TRIM28-205ENST00000595028 REM2Q8IYK8 340 aaPredicted RBP18.57■□□□□ 0.56
TRIM28-205ENST00000595028 ZNF296Q8WUU4 475 aaPredicted RBP18.57■□□□□ 0.56
TRIM28-205ENST00000595028 HTTP42858 3142 aa18.57■□□□□ 0.56
TRIM28-205ENST00000595028 DOCK2Q92608 1830 aa18.56■□□□□ 0.56
TRIM28-205ENST00000595028 IREB2P48200 963 aaKnown RBP18.56■□□□□ 0.56
TRIM28-205ENST00000595028 ERC1Q8IUD2 1116 aa18.56■□□□□ 0.56
TRIM28-205ENST00000595028 DBNLQ9UJU6 430 aaKnown RBP18.56■□□□□ 0.56
TRIM28-205ENST00000595028 RFX7Q2KHR2 1363 aa18.55■□□□□ 0.56
TRIM28-205ENST00000595028 UNCXA6NJT0 531 aa18.55■□□□□ 0.56
TRIM28-205ENST00000595028 HMMRO75330 724 aa18.55■□□□□ 0.56
TRIM28-205ENST00000595028 TTC39AQ5SRH9 613 aa18.55■□□□□ 0.56
TRIM28-205ENST00000595028 CDC42EP5Q6NZY7 148 aa18.55■□□□□ 0.56
TRIM28-205ENST00000595028 TLR7Q9NYK1 1049 aaKnown RBP18.55■□□□□ 0.56
TRIM28-205ENST00000595028 CENPFP49454 3210 aa18.55■□□□□ 0.56
TRIM28-205ENST00000595028 AK9Q5TCS8 1911 aa18.55■□□□□ 0.56
TRIM28-205ENST00000595028 MYO5AQ9Y4I1 1855 aaKnown RBP18.54■□□□□ 0.56
TRIM28-205ENST00000595028 USP2O75604 605 aaPredicted RBP18.54■□□□□ 0.56
TRIM28-205ENST00000595028 TBC1D8O95759 1140 aa18.54■□□□□ 0.56
TRIM28-205ENST00000595028 HSP90AB4PQ58FF6 505 aa18.54■□□□□ 0.56
TRIM28-205ENST00000595028 CCDC158Q5M9N0 1113 aa18.54■□□□□ 0.56
TRIM28-205ENST00000595028 ERICH6Q7L0X2 663 aa18.54■□□□□ 0.56
TRIM28-205ENST00000595028 SLF2Q8IX21 1173 aa18.54■□□□□ 0.56
TRIM28-205ENST00000595028 SIRT2Q8IXJ6 389 aa18.54■□□□□ 0.56
TRIM28-205ENST00000595028 EAF2Q96CJ1 260 aaPredicted RBP18.54■□□□□ 0.56
TRIM28-205ENST00000595028 CLMNQ96JQ2 1002 aa18.54■□□□□ 0.56
TRIM28-205ENST00000595028 ZNF512BQ96KM6 892 aaPredicted RBP18.54■□□□□ 0.56
TRIM28-205ENST00000595028 YTHDC1Q96MU7 727 aaKnown RBP18.54■□□□□ 0.56
TRIM28-205ENST00000595028 MROH7-TTC4A0A0A0MT08 1334 aa18.53■□□□□ 0.56
TRIM28-205ENST00000595028 MECOMQ03112 1051 aa18.53■□□□□ 0.56
TRIM28-205ENST00000595028 NFIAQ12857 509 aa18.53■□□□□ 0.56
TRIM28-205ENST00000595028 MKRN3Q13064 507 aaKnown RBP18.53■□□□□ 0.56
TRIM28-205ENST00000595028 SPRYD7Q5W111 196 aa18.53■□□□□ 0.56
TRIM28-205ENST00000595028 FBXO46Q6PJ61 603 aaPredicted RBP18.53■□□□□ 0.56
TRIM28-205ENST00000595028 ZNF384Q8TF68 577 aa18.53■□□□□ 0.56
TRIM28-205ENST00000595028 CCDC8Q9H0W5 538 aaPredicted RBP18.53■□□□□ 0.56
TRIM28-205ENST00000595028 TBC1D9Q6ZT07 1266 aa18.52■□□□□ 0.56
TRIM28-205ENST00000595028 ANKRD13AQ8IZ07 590 aa18.52■□□□□ 0.56
TRIM28-205ENST00000595028 FAM151AQ8WW52 585 aa18.52■□□□□ 0.56
TRIM28-205ENST00000595028 NSUN4Q96CB9 384 aaKnown RBP18.52■□□□□ 0.56
TRIM28-205ENST00000595028 FAM163AQ96GL9 167 aaPredicted RBP18.52■□□□□ 0.56
TRIM28-205ENST00000595028 USP40Q9NVE5 1235 aa18.52■□□□□ 0.56
TRIM28-205ENST00000595028 ZBTB48P10074 688 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-205ENST00000595028 BTDP43251 543 aa18.51■□□□□ 0.55
TRIM28-205ENST00000595028 FXR1P51114 621 aaKnown RBP eCLIP18.51■□□□□ 0.556e-7■■■□□ 15.1
TRIM28-205ENST00000595028 AACSQ86V21 672 aa18.51■□□□□ 0.55
TRIM28-205ENST00000595028 RHPN1Q8TCX5 695 aa18.51■□□□□ 0.55
TRIM28-205ENST00000595028 HOOK2Q96ED9 719 aa18.51■□□□□ 0.55
TRIM28-205ENST00000595028 SLC10A4Q96EP9 437 aa18.51■□□□□ 0.55
TRIM28-205ENST00000595028 WNK4Q96J92 1243 aa18.51■□□□□ 0.55
TRIM28-205ENST00000595028 SNRKQ9NRH2 765 aa18.51■□□□□ 0.55
TRIM28-205ENST00000595028 FAM198AQ9UFP1 575 aa18.51■□□□□ 0.55
TRIM28-205ENST00000595028 BRCA2P51587 3418 aa18.51■□□□□ 0.55
TRIM28-205ENST00000595028 GSTO1P78417 241 aa18.5■□□□□ 0.55
TRIM28-205ENST00000595028 SREBF2Q12772 1141 aa18.5■□□□□ 0.55
TRIM28-205ENST00000595028 TCP10Q12799 353 aa18.5■□□□□ 0.55
TRIM28-205ENST00000595028 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.5■□□□□ 0.559e-7■□□□□ 9.8
TRIM28-205ENST00000595028 IDI2Q9BXS1 227 aa18.5■□□□□ 0.55
TRIM28-205ENST00000595028 RAI14Q9P0K7 980 aa18.5■□□□□ 0.55
TRIM28-205ENST00000595028 GPR75-ASB3A0A0A6YYF3 556 aa18.49■□□□□ 0.55
TRIM28-205ENST00000595028 GPR25O00155 361 aa18.49■□□□□ 0.55
TRIM28-205ENST00000595028 RGS3P49796 1198 aa18.49■□□□□ 0.55
TRIM28-205ENST00000595028 RRP1P56182 461 aaKnown RBP18.49■□□□□ 0.55
TRIM28-205ENST00000595028 VGLL4Q14135 290 aa18.49■□□□□ 0.55
TRIM28-205ENST00000595028 DCAF15Q66K64 600 aa18.49■□□□□ 0.55
TRIM28-205ENST00000595028 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-205ENST00000595028 KIF1BPQ96EK5 621 aa18.49■□□□□ 0.55
TRIM28-205ENST00000595028 IL1RAPL2Q9NP60 686 aa18.49■□□□□ 0.55
TRIM28-205ENST00000595028 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-205ENST00000595028 LRP2BPQ9P2M1 347 aa18.49■□□□□ 0.55
TRIM28-205ENST00000595028 CDK5RAP2Q96SN8 1893 aa18.49■□□□□ 0.55
TRIM28-205ENST00000595028 SZT2Q5T011 3432 aa18.49■□□□□ 0.55
TRIM28-205ENST00000595028 ENTPD3O75355 529 aa18.48■□□□□ 0.55
TRIM28-205ENST00000595028 WDHD1O75717 1129 aaPredicted RBP18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms