RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 DIXDC1Q155Q3 683 aa21.79■■□□□ 1.08
SHKBP1-204ENST00000594862 ERICH6Q7L0X2 663 aa21.79■■□□□ 1.08
SHKBP1-204ENST00000594862 SLC10A4Q96EP9 437 aa21.79■■□□□ 1.08
SHKBP1-204ENST00000594862 CSRNP1Q96S65 589 aa21.79■■□□□ 1.08
SHKBP1-204ENST00000594862 TMEM39BQ9GZU3 492 aa21.79■■□□□ 1.08
SHKBP1-204ENST00000594862 HMG20BQ9P0W2 317 aa21.79■■□□□ 1.08
SHKBP1-204ENST00000594862 LAMB1P07942 1786 aa21.79■■□□□ 1.08
SHKBP1-204ENST00000594862 GAKO14976 1311 aa21.79■■□□□ 1.08
SHKBP1-204ENST00000594862 GSTO1P78417 241 aa21.78■■□□□ 1.08
SHKBP1-204ENST00000594862 TTC39AQ5SRH9 613 aa21.78■■□□□ 1.08
SHKBP1-204ENST00000594862 DCAF15Q66K64 600 aa21.78■■□□□ 1.08
SHKBP1-204ENST00000594862 FAM163AQ96GL9 167 aaPredicted RBP21.78■■□□□ 1.08
SHKBP1-204ENST00000594862 ZNF512BQ96KM6 892 aaPredicted RBP21.78■■□□□ 1.08
SHKBP1-204ENST00000594862 ZBTB40Q9NUA8 1239 aa21.78■■□□□ 1.08
SHKBP1-204ENST00000594862 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.78■■□□□ 1.08
SHKBP1-204ENST00000594862 MYH2Q9UKX2 1941 aa21.78■■□□□ 1.08
SHKBP1-204ENST00000594862 CASP8AP2Q9UKL3 1982 aa21.78■■□□□ 1.08
SHKBP1-204ENST00000594862 USP2O75604 605 aaPredicted RBP21.77■■□□□ 1.08
SHKBP1-204ENST00000594862 SPRYD7Q5W111 196 aa21.77■■□□□ 1.08
SHKBP1-204ENST00000594862 OTOFQ9HC10 1997 aa21.77■■□□□ 1.08
SHKBP1-204ENST00000594862 MAST2Q6P0Q8 1798 aa21.76■■□□□ 1.07
SHKBP1-204ENST00000594862 MAP4K4O95819 1239 aaPredicted RBP21.76■■□□□ 1.07
SHKBP1-204ENST00000594862 LDHCP07864 332 aa21.76■■□□□ 1.07
SHKBP1-204ENST00000594862 CACNB3P54284 484 aa21.76■■□□□ 1.07
SHKBP1-204ENST00000594862 INHBEP58166 350 aa21.76■■□□□ 1.07
SHKBP1-204ENST00000594862 CDC42EP5Q6NZY7 148 aa21.76■■□□□ 1.07
SHKBP1-204ENST00000594862 FAM151AQ8WW52 585 aa21.76■■□□□ 1.07
SHKBP1-204ENST00000594862 RNF186Q9NXI6 227 aa21.76■■□□□ 1.07
SHKBP1-204ENST00000594862 MANSC4A6NHS7 340 aaPredicted RBP21.75■■□□□ 1.07
SHKBP1-204ENST00000594862 TM4SF4P48230 202 aa21.75■■□□□ 1.07
SHKBP1-204ENST00000594862 WNK4Q96J92 1243 aa21.75■■□□□ 1.07
SHKBP1-204ENST00000594862 DBNDD2Q9BQY9 259 aa21.75■■□□□ 1.07
SHKBP1-204ENST00000594862 USP40Q9NVE5 1235 aa21.75■■□□□ 1.07
SHKBP1-204ENST00000594862 CSADQ9Y600 493 aa21.75■■□□□ 1.07
SHKBP1-204ENST00000594862 MROH7-TTC4A0A0A0MT08 1334 aa21.75■■□□□ 1.07
SHKBP1-204ENST00000594862 MCAMP43121 646 aa21.74■■□□□ 1.07
SHKBP1-204ENST00000594862 ENTPD3O75355 529 aa21.73■■□□□ 1.07
SHKBP1-204ENST00000594862 TRPA1O75762 1119 aa21.73■■□□□ 1.07
SHKBP1-204ENST00000594862 ALDH1A1P00352 501 aa21.73■■□□□ 1.07
SHKBP1-204ENST00000594862 MECOMQ03112 1051 aa21.73■■□□□ 1.07
SHKBP1-204ENST00000594862 IDI2Q9BXS1 227 aa21.73■■□□□ 1.07
SHKBP1-204ENST00000594862 LRP2BPQ9P2M1 347 aa21.73■■□□□ 1.07
SHKBP1-204ENST00000594862 TSKSQ9UJT2 592 aa21.73■■□□□ 1.07
SHKBP1-204ENST00000594862 FZD1Q9UP38 647 aa21.73■■□□□ 1.07
SHKBP1-204ENST00000594862 EXOC6BQ9Y2D4 811 aa21.73■■□□□ 1.07
SHKBP1-204ENST00000594862 MAP3K9P80192 1104 aa21.72■■□□□ 1.07
SHKBP1-204ENST00000594862 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.72■■□□□ 1.07
SHKBP1-204ENST00000594862 KIF1BPQ96EK5 621 aa21.72■■□□□ 1.07
SHKBP1-204ENST00000594862 CLMNQ96JQ2 1002 aa21.72■■□□□ 1.07
SHKBP1-204ENST00000594862 NOL10Q9BSC4 688 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-204ENST00000594862 RAI14Q9P0K7 980 aa21.72■■□□□ 1.07
SHKBP1-204ENST00000594862 DBNLQ9UJU6 430 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-204ENST00000594862 GPR75-ASB3A0A0A6YYF3 556 aa21.71■■□□□ 1.07
SHKBP1-204ENST00000594862 RAB11FIP3O75154 756 aa21.71■■□□□ 1.07
SHKBP1-204ENST00000594862 BTDP43251 543 aa21.71■■□□□ 1.07
SHKBP1-204ENST00000594862 TMED8Q6PL24 325 aaPredicted RBP21.71■■□□□ 1.07
SHKBP1-204ENST00000594862 PI16Q6UXB8 463 aa21.71■■□□□ 1.07
SHKBP1-204ENST00000594862 CDAN1Q8IWY9 1227 aa21.71■■□□□ 1.07
SHKBP1-204ENST00000594862 NSUN4Q96CB9 384 aaKnown RBP21.71■■□□□ 1.07
SHKBP1-204ENST00000594862 EAF2Q96CJ1 260 aaPredicted RBP21.71■■□□□ 1.07
SHKBP1-204ENST00000594862 ZNF341Q9BYN7 854 aa21.71■■□□□ 1.07
SHKBP1-204ENST00000594862 RFX7Q2KHR2 1363 aa21.71■■□□□ 1.07
SHKBP1-204ENST00000594862 DOCK2Q92608 1830 aa21.71■■□□□ 1.07
SHKBP1-204ENST00000594862 NPM3O75607 178 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-204ENST00000594862 MKRN3Q13064 507 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-204ENST00000594862 NOM1Q5C9Z4 860 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-204ENST00000594862 OTUD7BQ6GQQ9 843 aa21.7■■□□□ 1.06
SHKBP1-204ENST00000594862 AACSQ86V21 672 aa21.7■■□□□ 1.06
SHKBP1-204ENST00000594862 CLASRPQ8N2M8 674 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-204ENST00000594862 RHPN1Q8TCX5 695 aa21.7■■□□□ 1.06
SHKBP1-204ENST00000594862 TCP10Q12799 353 aa21.69■■□□□ 1.06
SHKBP1-204ENST00000594862 NFIAQ12857 509 aa21.69■■□□□ 1.06
SHKBP1-204ENST00000594862 VGLL4Q14135 290 aa21.69■■□□□ 1.06
SHKBP1-204ENST00000594862 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.69■■□□□ 1.06
SHKBP1-204ENST00000594862 WRNIP1Q96S55 665 aa21.69■■□□□ 1.06
SHKBP1-204ENST00000594862 CFHR5Q9BXR6 569 aa21.69■■□□□ 1.06
SHKBP1-204ENST00000594862 ELP3Q9H9T3 547 aa21.69■■□□□ 1.06
SHKBP1-204ENST00000594862 FAM198AQ9UFP1 575 aa21.69■■□□□ 1.06
SHKBP1-204ENST00000594862 RGS3P49796 1198 aa21.68■■□□□ 1.06
SHKBP1-204ENST00000594862 TBC1D9Q6ZT07 1266 aa21.68■■□□□ 1.06
SHKBP1-204ENST00000594862 OPTNQ96CV9 577 aa21.68■■□□□ 1.06
SHKBP1-204ENST00000594862 CCDC8Q9H0W5 538 aaPredicted RBP21.68■■□□□ 1.06
SHKBP1-204ENST00000594862 COL2A1P02458 1487 aaPredicted RBP21.68■■□□□ 1.06
SHKBP1-204ENST00000594862 AK9Q5TCS8 1911 aa21.68■■□□□ 1.06
SHKBP1-204ENST00000594862 SPDYE5A6NIY4 337 aa21.67■■□□□ 1.06
SHKBP1-204ENST00000594862 BAG3O95817 575 aa21.67■■□□□ 1.06
SHKBP1-204ENST00000594862 PLCG2P16885 1265 aa21.67■■□□□ 1.06
SHKBP1-204ENST00000594862 RGS19P49795 217 aa21.67■■□□□ 1.06
SHKBP1-204ENST00000594862 C20orf194Q5TEA3 1177 aa21.67■■□□□ 1.06
SHKBP1-204ENST00000594862 NAA16Q6N069 864 aaPredicted RBP21.67■■□□□ 1.06
SHKBP1-204ENST00000594862 TLR7Q9NYK1 1049 aaKnown RBP21.67■■□□□ 1.06
SHKBP1-204ENST00000594862 CCDC85CA6NKD9 419 aa21.66■■□□□ 1.06
SHKBP1-204ENST00000594862 GTF2A2P52657 109 aa21.66■■□□□ 1.06
SHKBP1-204ENST00000594862 ERO1BQ86YB8 467 aa21.66■■□□□ 1.06
SHKBP1-204ENST00000594862 IFNL1Q8IU54 200 aa21.66■■□□□ 1.06
SHKBP1-204ENST00000594862 CERS3Q8IU89 383 aa21.66■■□□□ 1.06
SHKBP1-204ENST00000594862 SIRT2Q8IXJ6 389 aa21.66■■□□□ 1.06
SHKBP1-204ENST00000594862 SNRKQ9NRH2 765 aa21.66■■□□□ 1.06
SHKBP1-204ENST00000594862 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.66■■□□□ 1.06
SHKBP1-204ENST00000594862 WDHD1O75717 1129 aaPredicted RBP21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms