RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 GRM8O00222 908 aa12.43□□□□□ -0.42
SS18-207ENST00000577636 EIF5BO60841 1220 aaKnown RBP12.43□□□□□ -0.42
SS18-207ENST00000577636 ANP32AP39687 249 aaKnown RBP12.43□□□□□ -0.42
SS18-207ENST00000577636 FKBP1AP62942 108 aaKnown RBP12.43□□□□□ -0.42
SS18-207ENST00000577636 MAP3K9P80192 1104 aa12.43□□□□□ -0.42
SS18-207ENST00000577636 FOXO4P98177 505 aa12.43□□□□□ -0.42
SS18-207ENST00000577636 MFSD14BQ5SR56 506 aa12.43□□□□□ -0.42
SS18-207ENST00000577636 LMBR1LQ6UX01 489 aa12.43□□□□□ -0.42
SS18-207ENST00000577636 C15orf52Q6ZUT6 534 aaKnown RBP12.43□□□□□ -0.42
SS18-207ENST00000577636 FAM43AQ8N2R8 423 aa12.43□□□□□ -0.42
SS18-207ENST00000577636 SH3TC2Q8TF17 1288 aa12.43□□□□□ -0.42
SS18-207ENST00000577636 TMEM39BQ9GZU3 492 aa12.43□□□□□ -0.42
SS18-207ENST00000577636 UPF2Q9HAU5 1272 aaKnown RBP12.43□□□□□ -0.42
SS18-207ENST00000577636 CSADQ9Y600 493 aa12.43□□□□□ -0.42
SS18-207ENST00000577636 WDHD1O75717 1129 aaPredicted RBP12.42□□□□□ -0.42
SS18-207ENST00000577636 GYG1P46976 350 aa12.42□□□□□ -0.42
SS18-207ENST00000577636 GTF2A2P52657 109 aa12.42□□□□□ -0.42
SS18-207ENST00000577636 VGLL4Q14135 290 aa12.42□□□□□ -0.42
SS18-207ENST00000577636 KIF22Q14807 665 aa12.42□□□□□ -0.42
SS18-207ENST00000577636 SPDYE2Q495Y8 402 aa12.42□□□□□ -0.42
SS18-207ENST00000577636 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.42□□□□□ -0.42
SS18-207ENST00000577636 MYH3P11055 1940 aa12.41□□□□□ -0.42
SS18-207ENST00000577636 H0YGN5 161 aa12.41□□□□□ -0.42
SS18-207ENST00000577636 SRGAP3O43295 1099 aa12.41□□□□□ -0.42
SS18-207ENST00000577636 RAB11FIP3O75154 756 aa12.41□□□□□ -0.42
SS18-207ENST00000577636 NBPF7P0C2Y1 421 aaPredicted RBP12.41□□□□□ -0.42
SS18-207ENST00000577636 HIBADHP31937 336 aaKnown RBP12.41□□□□□ -0.42
SS18-207ENST00000577636 CRKP46108 304 aa12.41□□□□□ -0.42
SS18-207ENST00000577636 TNNI2P48788 182 aa12.41□□□□□ -0.42
SS18-207ENST00000577636 CHAF1AQ13111 956 aaPredicted RBP12.41□□□□□ -0.42
SS18-207ENST00000577636 EPHA10Q5JZY3 1008 aa12.41□□□□□ -0.42
SS18-207ENST00000577636 DPF3Q92784 378 aa12.41□□□□□ -0.42
SS18-207ENST00000577636 LRRCC1Q9C099 1032 aa12.41□□□□□ -0.42
SS18-207ENST00000577636 ARHGAP39Q9C0H5 1083 aa12.41□□□□□ -0.42
SS18-207ENST00000577636 IQSEC3Q9UPP2 1182 aaPredicted RBP12.41□□□□□ -0.42
SS18-207ENST00000577636 ZNF646O15015 1829 aaPredicted RBP12.41□□□□□ -0.42
SS18-207ENST00000577636 KIAA0100Q14667 2235 aaKnown RBP12.41□□□□□ -0.42
SS18-207ENST00000577636 APBB1O00213 710 aa12.4□□□□□ -0.42
SS18-207ENST00000577636 FRAT2O75474 233 aaPredicted RBP12.4□□□□□ -0.42
SS18-207ENST00000577636 CACNB3P54284 484 aa12.4□□□□□ -0.42
SS18-207ENST00000577636 OS9Q13438 667 aaPredicted RBP12.4□□□□□ -0.42
SS18-207ENST00000577636 VPS37DQ86XT2 251 aa12.4□□□□□ -0.42
SS18-207ENST00000577636 TDRD7Q8NHU6 1098 aaKnown RBP12.4□□□□□ -0.42
SS18-207ENST00000577636 SSH3Q8TE77 659 aa12.4□□□□□ -0.42
SS18-207ENST00000577636 TEPSINQ96N21 525 aa12.4□□□□□ -0.42
SS18-207ENST00000577636 SERPINA10Q9UK55 444 aa12.4□□□□□ -0.42
SS18-207ENST00000577636 UTYO14607 1347 aa12.39□□□□□ -0.43
SS18-207ENST00000577636 FAM205AQ6ZU69 1335 aa12.39□□□□□ -0.43
SS18-207ENST00000577636 CENPFP49454 3210 aa12.39□□□□□ -0.43
SS18-207ENST00000577636 MTX1Q13505 466 aa12.39□□□□□ -0.43
SS18-207ENST00000577636 GRIK5Q16478 980 aa12.39□□□□□ -0.43
SS18-207ENST00000577636 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.39□□□□□ -0.43
SS18-207ENST00000577636 PUS3Q9BZE2 481 aaKnown RBP12.39□□□□□ -0.43
SS18-207ENST00000577636 PNMA6EA0A0J9YXQ4 647 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 BTBD19C9JJ37 291 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 TLR2O60603 784 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 SURF6O75683 361 aaKnown RBP12.38□□□□□ -0.43
SS18-207ENST00000577636 CETPP11597 493 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 UBE4AQ14139 1066 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 POLA2Q14181 598 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 BMP2KLQ5H9B9 411 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 CHRDL2Q6WN34 429 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 ERC1Q8IUD2 1116 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 ZKSCAN4Q969J2 545 aaPredicted RBP12.38□□□□□ -0.43
SS18-207ENST00000577636 FAM84BQ96KN1 310 aaPredicted RBP12.38□□□□□ -0.43
SS18-207ENST00000577636 WRNIP1Q96S55 665 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 BCL11AQ9H165 835 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 EXOC6BQ9Y2D4 811 aa12.38□□□□□ -0.43
SS18-207ENST00000577636 LACTBP83111 547 aaPredicted RBP12.37□□□□□ -0.43
SS18-207ENST00000577636 MTFR1Q15390 333 aa12.37□□□□□ -0.43
SS18-207ENST00000577636 C8orf34Q49A92 452 aa12.37□□□□□ -0.43
SS18-207ENST00000577636 PPP4R3CPQ6ZMV5 832 aa12.37□□□□□ -0.43
SS18-207ENST00000577636 MIGA2Q7L4E1 593 aa12.37□□□□□ -0.43
SS18-207ENST00000577636 TMOD2Q9NZR1 351 aa12.37□□□□□ -0.43
SS18-207ENST00000577636 BIN2Q9UBW5 565 aaPredicted RBP12.37□□□□□ -0.43
SS18-207ENST00000577636 CPA4Q9UI42 421 aa12.37□□□□□ -0.43
SS18-207ENST00000577636 HTTP42858 3142 aa12.37□□□□□ -0.43
SS18-207ENST00000577636 SPDYE5A6NIY4 337 aa12.36□□□□□ -0.43
SS18-207ENST00000577636 IRF6O14896 467 aa12.36□□□□□ -0.43
SS18-207ENST00000577636 FMNL1O95466 1100 aaPredicted RBP12.36□□□□□ -0.43
SS18-207ENST00000577636 PSMC4P43686 418 aa12.36□□□□□ -0.43
SS18-207ENST00000577636 SNAPC2Q13487 334 aa12.36□□□□□ -0.43
SS18-207ENST00000577636 CASC1Q6TDU7 716 aa12.36□□□□□ -0.43
SS18-207ENST00000577636 ERO1BQ86YB8 467 aa12.36□□□□□ -0.43
SS18-207ENST00000577636 KIF1BPQ96EK5 621 aa12.36□□□□□ -0.43
SS18-207ENST00000577636 SNCAIPQ9Y6H5 919 aa12.36□□□□□ -0.43
SS18-207ENST00000577636 BRCA2P51587 3418 aa12.35□□□□□ -0.43
SS18-207ENST00000577636 G3BP1Q13283 466 aaKnown RBP eCLIP12.35□□□□□ -0.43
SS18-207ENST00000577636 CAVIN4Q5BKX8 364 aa12.35□□□□□ -0.43
SS18-207ENST00000577636 RAET1EQ8TD07 263 aa12.35□□□□□ -0.43
SS18-207ENST00000577636 TEKT1Q969V4 418 aa12.35□□□□□ -0.43
SS18-207ENST00000577636 SUCLG2Q96I99 432 aa12.35□□□□□ -0.43
SS18-207ENST00000577636 BICC1Q9H694 974 aaKnown RBP12.35□□□□□ -0.43
SS18-207ENST00000577636 RBM27Q9P2N5 1060 aaKnown RBP12.35□□□□□ -0.43
SS18-207ENST00000577636 HOXD10P28358 340 aa12.34□□□□□ -0.43
SS18-207ENST00000577636 METTL24Q5JXM2 366 aa12.34□□□□□ -0.43
SS18-207ENST00000577636 FBXO33Q7Z6M2 555 aa12.34□□□□□ -0.43
SS18-207ENST00000577636 PLEKHM2Q8IWE5 1019 aa12.34□□□□□ -0.43
SS18-207ENST00000577636 GPATCH3Q96I76 525 aa12.34□□□□□ -0.43
SS18-207ENST00000577636 ECM29Q5VYK3 1845 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms