RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 IREB2P48200 963 aaKnown RBP24.73■■□□□ 1.55
NUP88-204ENST00000572290 CDC42EP5Q6NZY7 148 aa24.73■■□□□ 1.55
NUP88-204ENST00000572290 SIRT2Q8IXJ6 389 aa24.73■■□□□ 1.55
NUP88-204ENST00000572290 EAF2Q96CJ1 260 aaPredicted RBP24.73■■□□□ 1.55
NUP88-204ENST00000572290 CCDC8Q9H0W5 538 aaPredicted RBP24.73■■□□□ 1.55
NUP88-204ENST00000572290 GAKO14976 1311 aa24.72■■□□□ 1.55
NUP88-204ENST00000572290 USP2O75604 605 aaPredicted RBP24.72■■□□□ 1.55
NUP88-204ENST00000572290 REM2Q8IYK8 340 aaPredicted RBP24.72■■□□□ 1.55
NUP88-204ENST00000572290 CSRNP1Q96S65 589 aa24.72■■□□□ 1.55
NUP88-204ENST00000572290 USP40Q9NVE5 1235 aa24.72■■□□□ 1.55
NUP88-204ENST00000572290 DBNLQ9UJU6 430 aaKnown RBP24.72■■□□□ 1.55
NUP88-204ENST00000572290 UNCXA6NJT0 531 aa24.71■■□□□ 1.55
NUP88-204ENST00000572290 TBC1D9Q6ZT07 1266 aa24.71■■□□□ 1.55
NUP88-204ENST00000572290 SLC10A4Q96EP9 437 aa24.71■■□□□ 1.55
NUP88-204ENST00000572290 FAM163AQ96GL9 167 aaPredicted RBP24.71■■□□□ 1.55
NUP88-204ENST00000572290 ZNF512BQ96KM6 892 aaPredicted RBP24.71■■□□□ 1.55
NUP88-204ENST00000572290 TLR7Q9NYK1 1049 aaKnown RBP24.71■■□□□ 1.55
NUP88-204ENST00000572290 ECM29Q5VYK3 1845 aa24.7■■□□□ 1.55
NUP88-204ENST00000572290 MECOMQ03112 1051 aa24.7■■□□□ 1.54
NUP88-204ENST00000572290 RHPN1Q8TCX5 695 aa24.7■■□□□ 1.54
NUP88-204ENST00000572290 SNRKQ9NRH2 765 aa24.7■■□□□ 1.54
NUP88-204ENST00000572290 TSKSQ9UJT2 592 aa24.7■■□□□ 1.54
NUP88-204ENST00000572290 MKRN3Q13064 507 aaKnown RBP24.69■■□□□ 1.54
NUP88-204ENST00000572290 ANKRD13AQ8IZ07 590 aa24.69■■□□□ 1.54
NUP88-204ENST00000572290 FAM151AQ8WW52 585 aa24.69■■□□□ 1.54
NUP88-204ENST00000572290 CLMNQ96JQ2 1002 aa24.69■■□□□ 1.54
NUP88-204ENST00000572290 RAI14Q9P0K7 980 aa24.69■■□□□ 1.54
NUP88-204ENST00000572290 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.69■■□□□ 1.54
NUP88-204ENST00000572290 MROH7-TTC4A0A0A0MT08 1334 aa24.68■■□□□ 1.54
NUP88-204ENST00000572290 GSTO1P78417 241 aa24.68■■□□□ 1.54
NUP88-204ENST00000572290 NFIAQ12857 509 aa24.68■■□□□ 1.54
NUP88-204ENST00000572290 AACSQ86V21 672 aa24.68■■□□□ 1.54
NUP88-204ENST00000572290 HOOK2Q96ED9 719 aa24.68■■□□□ 1.54
NUP88-204ENST00000572290 KIF1BPQ96EK5 621 aa24.68■■□□□ 1.54
NUP88-204ENST00000572290 IL1RAPL2Q9NP60 686 aa24.68■■□□□ 1.54
NUP88-204ENST00000572290 LRP2BPQ9P2M1 347 aa24.68■■□□□ 1.54
NUP88-204ENST00000572290 RPAP1Q9BWH6 1393 aaPredicted RBP24.67■■□□□ 1.54
NUP88-204ENST00000572290 APBB1O00213 710 aa24.67■■□□□ 1.54
NUP88-204ENST00000572290 LDHCP07864 332 aa24.67■■□□□ 1.54
NUP88-204ENST00000572290 BTDP43251 543 aa24.67■■□□□ 1.54
NUP88-204ENST00000572290 TCP10Q12799 353 aa24.67■■□□□ 1.54
NUP88-204ENST00000572290 SPRYD7Q5W111 196 aa24.67■■□□□ 1.54
NUP88-204ENST00000572290 NSUN4Q96CB9 384 aaKnown RBP24.67■■□□□ 1.54
NUP88-204ENST00000572290 SAGE1Q9NXZ1 904 aa24.67■■□□□ 1.54
NUP88-204ENST00000572290 MYH13Q9UKX3 1938 aa24.67■■□□□ 1.54
NUP88-204ENST00000572290 RAB11FIP3O75154 756 aa24.66■■□□□ 1.54
NUP88-204ENST00000572290 RRP1P56182 461 aaKnown RBP24.66■■□□□ 1.54
NUP88-204ENST00000572290 TNS4Q8IZW8 715 aa24.66■■□□□ 1.54
NUP88-204ENST00000572290 CLASRPQ8N2M8 674 aaKnown RBP24.66■■□□□ 1.54
NUP88-204ENST00000572290 ZNF384Q8TF68 577 aa24.66■■□□□ 1.54
NUP88-204ENST00000572290 RNF186Q9NXI6 227 aa24.66■■□□□ 1.54
NUP88-204ENST00000572290 FAM198AQ9UFP1 575 aa24.66■■□□□ 1.54
NUP88-204ENST00000572290 GPR75-ASB3A0A0A6YYF3 556 aa24.65■■□□□ 1.54
NUP88-204ENST00000572290 ZAP70P43403 619 aa24.65■■□□□ 1.54
NUP88-204ENST00000572290 WNK4Q96J92 1243 aa24.65■■□□□ 1.54
NUP88-204ENST00000572290 IDI2Q9BXS1 227 aa24.65■■□□□ 1.54
NUP88-204ENST00000572290 TRPA1O75762 1119 aa24.64■■□□□ 1.54
NUP88-204ENST00000572290 CYP2E1P05181 493 aaPredicted RBP24.64■■□□□ 1.54
NUP88-204ENST00000572290 MAP3K9P80192 1104 aa24.64■■□□□ 1.54
NUP88-204ENST00000572290 DCAF15Q66K64 600 aa24.64■■□□□ 1.54
NUP88-204ENST00000572290 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.64■■□□□ 1.54
NUP88-204ENST00000572290 ZBTB48P10074 688 aaPredicted RBP24.63■■□□□ 1.53
NUP88-204ENST00000572290 TM4SF4P48230 202 aa24.63■■□□□ 1.53
NUP88-204ENST00000572290 SREBF2Q12772 1141 aa24.63■■□□□ 1.53
NUP88-204ENST00000572290 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.63■■□□□ 1.53
NUP88-204ENST00000572290 ELP3Q9H9T3 547 aa24.63■■□□□ 1.53
NUP88-204ENST00000572290 IGSF3O75054 1194 aa24.62■■□□□ 1.53
NUP88-204ENST00000572290 ENTPD3O75355 529 aa24.62■■□□□ 1.53
NUP88-204ENST00000572290 RGS3P49796 1198 aa24.62■■□□□ 1.53
NUP88-204ENST00000572290 CSADQ9Y600 493 aa24.62■■□□□ 1.53
NUP88-204ENST00000572290 MANSC4A6NHS7 340 aaPredicted RBP24.61■■□□□ 1.53
NUP88-204ENST00000572290 WDHD1O75717 1129 aaPredicted RBP24.61■■□□□ 1.53
NUP88-204ENST00000572290 IFIT2P09913 472 aaKnown RBP24.61■■□□□ 1.53
NUP88-204ENST00000572290 RHBDL3P58872 404 aa24.61■■□□□ 1.53
NUP88-204ENST00000572290 VGLL4Q14135 290 aa24.61■■□□□ 1.53
NUP88-204ENST00000572290 NAA16Q6N069 864 aaPredicted RBP24.61■■□□□ 1.53
NUP88-204ENST00000572290 MIGA2Q7L4E1 593 aa24.61■■□□□ 1.53
NUP88-204ENST00000572290 ZFPM1Q8IX07 1006 aa24.61■■□□□ 1.53
NUP88-204ENST00000572290 ZNF341Q9BYN7 854 aa24.61■■□□□ 1.53
NUP88-204ENST00000572290 RFX7Q2KHR2 1363 aa24.6■■□□□ 1.53
NUP88-204ENST00000572290 MAP4K4O95819 1239 aaPredicted RBP24.6■■□□□ 1.53
NUP88-204ENST00000572290 WRNIP1Q96S55 665 aa24.6■■□□□ 1.53
NUP88-204ENST00000572290 BCL11AQ9H165 835 aa24.6■■□□□ 1.53
NUP88-204ENST00000572290 PIH1D3Q9NQM4 214 aaKnown RBP24.6■■□□□ 1.53
NUP88-204ENST00000572290 GJA5P36382 358 aa24.59■■□□□ 1.53
NUP88-204ENST00000572290 INHBEP58166 350 aa24.59■■□□□ 1.53
NUP88-204ENST00000572290 PICALMQ13492 652 aa24.59■■□□□ 1.53
NUP88-204ENST00000572290 OPTNQ96CV9 577 aa24.59■■□□□ 1.53
NUP88-204ENST00000572290 NOL10Q9BSC4 688 aaKnown RBP24.59■■□□□ 1.53
NUP88-204ENST00000572290 DDX4Q9NQI0 724 aaKnown RBP24.59■■□□□ 1.53
NUP88-204ENST00000572290 BAG3O95817 575 aa24.57■■□□□ 1.52
NUP88-204ENST00000572290 ZSCAN29Q8IWY8 852 aaPredicted RBP24.57■■□□□ 1.52
NUP88-204ENST00000572290 NDUFB9Q9Y6M9 179 aa24.57■■□□□ 1.52
NUP88-204ENST00000572290 NPM3O75607 178 aaKnown RBP24.56■■□□□ 1.52
NUP88-204ENST00000572290 IDH1O75874 414 aaKnown RBP24.56■■□□□ 1.52
NUP88-204ENST00000572290 SH3BP5LQ7L8J4 393 aa24.56■■□□□ 1.52
NUP88-204ENST00000572290 ZKSCAN4Q969J2 545 aaPredicted RBP24.56■■□□□ 1.52
NUP88-204ENST00000572290 LRRCC1Q9C099 1032 aa24.56■■□□□ 1.52
NUP88-204ENST00000572290 ANTXR1Q9H6X2 564 aa24.56■■□□□ 1.52
NUP88-204ENST00000572290 SNCAIPQ9Y6H5 919 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms