RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 MOB2Q70IA6 237 aa25.1■■□□□ 1.61
VPS53-210ENST00000571456 TLR7Q9NYK1 1049 aaKnown RBP25.1■■□□□ 1.61
VPS53-210ENST00000571456 TTC41PQ6P2S7 1318 aa25.1■■□□□ 1.61
VPS53-210ENST00000571456 BRCA2P51587 3418 aa25.09■■□□□ 1.61
VPS53-210ENST00000571456 POTEFA5A3E0 1075 aa25.09■■□□□ 1.61
VPS53-210ENST00000571456 HDLBPQ00341 1268 aaKnown RBP25.09■■□□□ 1.61
VPS53-210ENST00000571456 TMED8Q6PL24 325 aaPredicted RBP25.09■■□□□ 1.61
VPS53-210ENST00000571456 MRIQ9BWK5 157 aa25.09■■□□□ 1.61
VPS53-210ENST00000571456 ECHDC1Q9NTX5 307 aa25.09■■□□□ 1.61
VPS53-210ENST00000571456 HMG20BQ9P0W2 317 aa25.09■■□□□ 1.61
VPS53-210ENST00000571456 SZT2Q5T011 3432 aa25.08■■□□□ 1.61
VPS53-210ENST00000571456 UBE2Q2LH0YL09 131 aa25.08■■□□□ 1.61
VPS53-210ENST00000571456 SMARCA5O60264 1052 aaPredicted RBP25.08■■□□□ 1.61
VPS53-210ENST00000571456 ATP5JP18859 108 aa25.08■■□□□ 1.61
VPS53-210ENST00000571456 NUCB1Q02818 461 aa25.08■■□□□ 1.61
VPS53-210ENST00000571456 CFHR5Q9BXR6 569 aa25.08■■□□□ 1.61
VPS53-210ENST00000571456 COL1A1P02452 1464 aaPredicted RBP25.08■■□□□ 1.6
VPS53-210ENST00000571456 MCAMP43121 646 aa25.07■■□□□ 1.6
VPS53-210ENST00000571456 CHD1LQ86WJ1 897 aa25.07■■□□□ 1.6
VPS53-210ENST00000571456 CERS5Q8N5B7 392 aa25.07■■□□□ 1.6
VPS53-210ENST00000571456 ERC2O15083 957 aa25.06■■□□□ 1.6
VPS53-210ENST00000571456 SREBF2Q12772 1141 aa25.06■■□□□ 1.6
VPS53-210ENST00000571456 TTF1Q15361 905 aaPredicted RBP25.06■■□□□ 1.6
VPS53-210ENST00000571456 CENPQQ7L2Z9 268 aaPredicted RBP25.06■■□□□ 1.6
VPS53-210ENST00000571456 PITPNM2Q9BZ72 1349 aa25.06■■□□□ 1.6
VPS53-210ENST00000571456 LDHBP07195 334 aaKnown RBP25.05■■□□□ 1.6
VPS53-210ENST00000571456 KIAA0825Q8IV33 1275 aa25.05■■□□□ 1.6
VPS53-210ENST00000571456 SLF2Q8IX21 1173 aa25.05■■□□□ 1.6
VPS53-210ENST00000571456 MTMR14Q8NCE2 650 aa25.05■■□□□ 1.6
VPS53-210ENST00000571456 CCDC136Q96JN2 1154 aa25.05■■□□□ 1.6
VPS53-210ENST00000571456 R3HDMLQ9H3Y0 253 aa25.05■■□□□ 1.6
VPS53-210ENST00000571456 SERPINA10Q9UK55 444 aa25.05■■□□□ 1.6
VPS53-210ENST00000571456 TTF2Q9UNY4 1162 aaKnown RBP25.04■■□□□ 1.6
VPS53-210ENST00000571456 MX1P20591 662 aa25.03■■□□□ 1.6
VPS53-210ENST00000571456 MKRN3Q13064 507 aaKnown RBP25.03■■□□□ 1.6
VPS53-210ENST00000571456 TTLL12Q14166 644 aaPredicted RBP25.03■■□□□ 1.6
VPS53-210ENST00000571456 ERICH6Q7L0X2 663 aa25.03■■□□□ 1.6
VPS53-210ENST00000571456 MXD3Q9BW11 206 aa25.03■■□□□ 1.6
VPS53-210ENST00000571456 MYOZ2Q9NPC6 264 aa25.03■■□□□ 1.6
VPS53-210ENST00000571456 JAG2Q9Y219 1238 aa25.03■■□□□ 1.6
VPS53-210ENST00000571456 GLRX3O76003 335 aaKnown RBP25.02■■□□□ 1.6
VPS53-210ENST00000571456 B4GALNT3Q6L9W6 998 aa25.02■■□□□ 1.6
VPS53-210ENST00000571456 PPP4R2Q9NY27 417 aa25.02■■□□□ 1.6
VPS53-210ENST00000571456 COLQQ9Y215 455 aaPredicted RBP25.02■■□□□ 1.6
VPS53-210ENST00000571456 TRIM17Q9Y577 477 aa25.02■■□□□ 1.6
VPS53-210ENST00000571456 AOX1Q06278 1338 aa25.02■■□□□ 1.6
VPS53-210ENST00000571456 HHIPL2Q6UWX4 724 aa25.01■■□□□ 1.59
VPS53-210ENST00000571456 TEKT1Q969V4 418 aa25.01■■□□□ 1.59
VPS53-210ENST00000571456 HAUS7Q99871 368 aa25.01■■□□□ 1.59
VPS53-210ENST00000571456 LNPKQ9C0E8 428 aa25.01■■□□□ 1.59
VPS53-210ENST00000571456 ABCF2Q9UG63 623 aa25.01■■□□□ 1.59
VPS53-210ENST00000571456 STAP2Q9UGK3 403 aa25.01■■□□□ 1.59
VPS53-210ENST00000571456 SALL3Q9BXA9 1300 aa25.01■■□□□ 1.59
VPS53-210ENST00000571456 ECM29Q5VYK3 1845 aa25■■□□□ 1.59
VPS53-210ENST00000571456 GSTO1P78417 241 aa25■■□□□ 1.59
VPS53-210ENST00000571456 OTOP1Q7RTM1 612 aa25■■□□□ 1.59
VPS53-210ENST00000571456 BCL11AQ9H165 835 aa25■■□□□ 1.59
VPS53-210ENST00000571456 LRP2BPQ9P2M1 347 aa25■■□□□ 1.59
VPS53-210ENST00000571456 SCAF8Q9UPN6 1271 aaKnown RBP25■■□□□ 1.59
VPS53-210ENST00000571456 MAST2Q6P0Q8 1798 aa25■■□□□ 1.59
VPS53-210ENST00000571456 DOCK2Q92608 1830 aa25■■□□□ 1.59
VPS53-210ENST00000571456 CYP2E1P05181 493 aaPredicted RBP24.99■■□□□ 1.59
VPS53-210ENST00000571456 LDHCP07864 332 aa24.99■■□□□ 1.59
VPS53-210ENST00000571456 ZAP70P43403 619 aa24.99■■□□□ 1.59
VPS53-210ENST00000571456 DLGAP5Q15398 846 aa24.99■■□□□ 1.59
VPS53-210ENST00000571456 PRAMEF18Q5VWM3 479 aa24.99■■□□□ 1.59
VPS53-210ENST00000571456 DZIP1Q86YF9 867 aaKnown RBP24.99■■□□□ 1.59
VPS53-210ENST00000571456 CUL9Q8IWT3 2517 aa24.99■■□□□ 1.59
VPS53-210ENST00000571456 A0A0C4DFX4 3053 aa24.99■■□□□ 1.59
VPS53-210ENST00000571456 F8W031 263 aaPredicted RBP24.98■■□□□ 1.59
VPS53-210ENST00000571456 MYO1BO43795 1136 aa24.98■■□□□ 1.59
VPS53-210ENST00000571456 ALDH1A1P00352 501 aa24.98■■□□□ 1.59
VPS53-210ENST00000571456 PRDX5P30044 214 aa24.98■■□□□ 1.59
VPS53-210ENST00000571456 PI16Q6UXB8 463 aa24.98■■□□□ 1.59
VPS53-210ENST00000571456 FAM163AQ96GL9 167 aaPredicted RBP24.98■■□□□ 1.59
VPS53-210ENST00000571456 OSBPL3Q9H4L5 887 aa24.98■■□□□ 1.59
VPS53-210ENST00000571456 SNRKQ9NRH2 765 aa24.98■■□□□ 1.59
VPS53-210ENST00000571456 MYH2Q9UKX2 1941 aa24.98■■□□□ 1.59
VPS53-210ENST00000571456 EN2P19622 333 aaPredicted RBP24.97■■□□□ 1.59
VPS53-210ENST00000571456 CRKP46108 304 aa24.97■■□□□ 1.59
VPS53-210ENST00000571456 PDE1AP54750 535 aa24.97■■□□□ 1.59
VPS53-210ENST00000571456 MAP3K12Q12852 859 aa24.97■■□□□ 1.59
VPS53-210ENST00000571456 TICAM2Q86XR7 235 aa24.97■■□□□ 1.59
VPS53-210ENST00000571456 ZBED3Q96IU2 234 aaPredicted RBP24.97■■□□□ 1.59
VPS53-210ENST00000571456 PAG1Q9NWQ8 432 aa24.97■■□□□ 1.59
VPS53-210ENST00000571456 NF2P35240 595 aa24.96■■□□□ 1.59
VPS53-210ENST00000571456 CFAP100Q494V2 611 aa24.96■■□□□ 1.59
VPS53-210ENST00000571456 ZDHHC15Q96MV8 337 aa24.96■■□□□ 1.59
VPS53-210ENST00000571456 BOLA2Q9H3K6 86 aa24.96■■□□□ 1.59
VPS53-210ENST00000571456 RAI14Q9P0K7 980 aa24.96■■□□□ 1.59
VPS53-210ENST00000571456 SPDYE2BA6NHP3 402 aa24.95■■□□□ 1.58
VPS53-210ENST00000571456 MAP4K4O95819 1239 aaPredicted RBP24.95■■□□□ 1.58
VPS53-210ENST00000571456 SPDYE6P0CI01 402 aa24.95■■□□□ 1.58
VPS53-210ENST00000571456 LRRFIP1Q32MZ4 808 aaKnown RBP24.95■■□□□ 1.58
VPS53-210ENST00000571456 CERS3Q8IU89 383 aa24.95■■□□□ 1.58
VPS53-210ENST00000571456 DNAJC2Q99543 621 aaKnown RBP24.95■■□□□ 1.58
VPS53-210ENST00000571456 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.95■■□□□ 1.583e-7■■■■□ 22.6
VPS53-210ENST00000571456 WNT10BO00744 389 aa24.94■■□□□ 1.58
VPS53-210ENST00000571456 RBM5P52756 815 aaKnown RBP eCLIP24.94■■□□□ 1.58
VPS53-210ENST00000571456 PI4K2BQ8TCG2 481 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms