RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 FAM83AQ86UY5 434 aa16.02■□□□□ 0.16
CNOT1-220ENST00000569916 DZIP1Q86YF9 867 aaKnown RBP16.02■□□□□ 0.16
CNOT1-220ENST00000569916 ERC1Q8IUD2 1116 aa16.02■□□□□ 0.16
CNOT1-220ENST00000569916 EAF2Q96CJ1 260 aaPredicted RBP16.02■□□□□ 0.16
CNOT1-220ENST00000569916 BEGAINQ9BUH8 593 aa16.02■□□□□ 0.16
CNOT1-220ENST00000569916 RFX7Q2KHR2 1363 aa16.01■□□□□ 0.15
CNOT1-220ENST00000569916 HMMRO75330 724 aa16.01■□□□□ 0.15
CNOT1-220ENST00000569916 LBX1P52954 281 aa16.01■□□□□ 0.15
CNOT1-220ENST00000569916 HSP90AB4PQ58FF6 505 aa16.01■□□□□ 0.15
CNOT1-220ENST00000569916 TTC39AQ5SRH9 613 aa16.01■□□□□ 0.15
CNOT1-220ENST00000569916 SPTY2D1Q68D10 685 aaPredicted RBP16.01■□□□□ 0.15
CNOT1-220ENST00000569916 CDC42EP5Q6NZY7 148 aa16.01■□□□□ 0.15
CNOT1-220ENST00000569916 PIAS4Q8N2W9 510 aaPredicted RBP16.01■□□□□ 0.15
CNOT1-220ENST00000569916 ZNF384Q8TF68 577 aa16.01■□□□□ 0.15
CNOT1-220ENST00000569916 CCDC8Q9H0W5 538 aaPredicted RBP16.01■□□□□ 0.15
CNOT1-220ENST00000569916 PRDM10Q9NQV6 1147 aa16.01■□□□□ 0.15
CNOT1-220ENST00000569916 AK9Q5TCS8 1911 aa16.01■□□□□ 0.15
CNOT1-220ENST00000569916 CDK5RAP2Q96SN8 1893 aa16■□□□□ 0.15
CNOT1-220ENST00000569916 CA12O43570 354 aa16■□□□□ 0.15
CNOT1-220ENST00000569916 USP2O75604 605 aaPredicted RBP16■□□□□ 0.15
CNOT1-220ENST00000569916 MECOMQ03112 1051 aa16■□□□□ 0.15
CNOT1-220ENST00000569916 CCDC158Q5M9N0 1113 aa16■□□□□ 0.15
CNOT1-220ENST00000569916 TBC1D9Q6ZT07 1266 aa16■□□□□ 0.15
CNOT1-220ENST00000569916 ERICH6Q7L0X2 663 aa16■□□□□ 0.15
CNOT1-220ENST00000569916 RHPN1Q8TCX5 695 aa16■□□□□ 0.15
CNOT1-220ENST00000569916 FAM163AQ96GL9 167 aaPredicted RBP16■□□□□ 0.15
CNOT1-220ENST00000569916 ZNF512BQ96KM6 892 aaPredicted RBP16■□□□□ 0.15
CNOT1-220ENST00000569916 TSKSQ9UJT2 592 aa16■□□□□ 0.15
CNOT1-220ENST00000569916 MROH7-TTC4A0A0A0MT08 1334 aa15.99■□□□□ 0.15
CNOT1-220ENST00000569916 FOCADQ5VW36 1801 aa15.99■□□□□ 0.15
CNOT1-220ENST00000569916 UNCXA6NJT0 531 aa15.99■□□□□ 0.15
CNOT1-220ENST00000569916 IREB2P48200 963 aaKnown RBP15.99■□□□□ 0.15
CNOT1-220ENST00000569916 RRP1P56182 461 aaKnown RBP15.99■□□□□ 0.15
CNOT1-220ENST00000569916 NFIAQ12857 509 aa15.99■□□□□ 0.15
CNOT1-220ENST00000569916 AACSQ86V21 672 aa15.99■□□□□ 0.15
CNOT1-220ENST00000569916 CLMNQ96JQ2 1002 aa15.99■□□□□ 0.15
CNOT1-220ENST00000569916 CSRNP1Q96S65 589 aa15.99■□□□□ 0.15
CNOT1-220ENST00000569916 SNRKQ9NRH2 765 aa15.99■□□□□ 0.15
CNOT1-220ENST00000569916 SPRYD7Q5W111 196 aa15.98■□□□□ 0.15
CNOT1-220ENST00000569916 SLF2Q8IX21 1173 aa15.98■□□□□ 0.15
CNOT1-220ENST00000569916 FAM151AQ8WW52 585 aa15.98■□□□□ 0.15
CNOT1-220ENST00000569916 NSUN4Q96CB9 384 aaKnown RBP15.98■□□□□ 0.15
CNOT1-220ENST00000569916 IL1RAPL2Q9NP60 686 aa15.98■□□□□ 0.15
CNOT1-220ENST00000569916 USP40Q9NVE5 1235 aa15.98■□□□□ 0.15
CNOT1-220ENST00000569916 FAM198AQ9UFP1 575 aa15.98■□□□□ 0.15
CNOT1-220ENST00000569916 CYP2E1P05181 493 aaPredicted RBP15.97■□□□□ 0.15
CNOT1-220ENST00000569916 BTDP43251 543 aa15.97■□□□□ 0.15
CNOT1-220ENST00000569916 MKRN3Q13064 507 aaKnown RBP15.97■□□□□ 0.15
CNOT1-220ENST00000569916 REM2Q8IYK8 340 aaPredicted RBP15.97■□□□□ 0.15
CNOT1-220ENST00000569916 ANKRD13AQ8IZ07 590 aa15.97■□□□□ 0.15
CNOT1-220ENST00000569916 KIF1BPQ96EK5 621 aa15.97■□□□□ 0.15
CNOT1-220ENST00000569916 IDI2Q9BXS1 227 aa15.97■□□□□ 0.15
CNOT1-220ENST00000569916 SAGE1Q9NXZ1 904 aa15.97■□□□□ 0.15
CNOT1-220ENST00000569916 RAI14Q9P0K7 980 aa15.97■□□□□ 0.15
CNOT1-220ENST00000569916 GPR75-ASB3A0A0A6YYF3 556 aa15.96■□□□□ 0.15
CNOT1-220ENST00000569916 APBB1O00213 710 aa15.96■□□□□ 0.15
CNOT1-220ENST00000569916 RAB11FIP3O75154 756 aa15.96■□□□□ 0.15
CNOT1-220ENST00000569916 ZAP70P43403 619 aa15.96■□□□□ 0.15
CNOT1-220ENST00000569916 GSTO1P78417 241 aa15.96■□□□□ 0.15
CNOT1-220ENST00000569916 TCP10Q12799 353 aa15.96■□□□□ 0.15
CNOT1-220ENST00000569916 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.96■□□□□ 0.15
CNOT1-220ENST00000569916 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.96■□□□□ 0.15
CNOT1-220ENST00000569916 SLC10A4Q96EP9 437 aa15.96■□□□□ 0.15
CNOT1-220ENST00000569916 WNK4Q96J92 1243 aa15.96■□□□□ 0.15
CNOT1-220ENST00000569916 RNF186Q9NXI6 227 aa15.96■□□□□ 0.15
CNOT1-220ENST00000569916 LRP2BPQ9P2M1 347 aa15.96■□□□□ 0.15
CNOT1-220ENST00000569916 CASP8AP2Q9UKL3 1982 aa15.96■□□□□ 0.15
CNOT1-220ENST00000569916 ZBTB48P10074 688 aaPredicted RBP15.95■□□□□ 0.14
CNOT1-220ENST00000569916 GJA5P36382 358 aa15.95■□□□□ 0.14
CNOT1-220ENST00000569916 RGS3P49796 1198 aa15.95■□□□□ 0.14
CNOT1-220ENST00000569916 RHBDL3P58872 404 aa15.95■□□□□ 0.14
CNOT1-220ENST00000569916 CLASRPQ8N2M8 674 aaKnown RBP15.95■□□□□ 0.14
CNOT1-220ENST00000569916 PIH1D3Q9NQM4 214 aaKnown RBP15.95■□□□□ 0.14
CNOT1-220ENST00000569916 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.95■□□□□ 0.14
CNOT1-220ENST00000569916 ATRNL1Q5VV63 1379 aa15.95■□□□□ 0.14
CNOT1-220ENST00000569916 ENTPD3O75355 529 aa15.94■□□□□ 0.14
CNOT1-220ENST00000569916 WDHD1O75717 1129 aaPredicted RBP15.94■□□□□ 0.14
CNOT1-220ENST00000569916 LDHCP07864 332 aa15.94■□□□□ 0.14
CNOT1-220ENST00000569916 TM4SF4P48230 202 aa15.94■□□□□ 0.14
CNOT1-220ENST00000569916 VGLL4Q14135 290 aa15.94■□□□□ 0.14
CNOT1-220ENST00000569916 ZFPM1Q8IX07 1006 aa15.94■□□□□ 0.14
CNOT1-220ENST00000569916 TNS4Q8IZW8 715 aa15.94■□□□□ 0.14
CNOT1-220ENST00000569916 HOOK2Q96ED9 719 aa15.94■□□□□ 0.14
CNOT1-220ENST00000569916 ELP3Q9H9T3 547 aa15.94■□□□□ 0.14
CNOT1-220ENST00000569916 DDX4Q9NQI0 724 aaKnown RBP15.94■□□□□ 0.14
CNOT1-220ENST00000569916 NDUFB9Q9Y6M9 179 aa15.94■□□□□ 0.14
CNOT1-220ENST00000569916 SIPA1L1O43166 1804 aa15.94■□□□□ 0.14
CNOT1-220ENST00000569916 TRPA1O75762 1119 aa15.93■□□□□ 0.14
CNOT1-220ENST00000569916 MAP3K9P80192 1104 aa15.93■□□□□ 0.14
CNOT1-220ENST00000569916 SREBF2Q12772 1141 aa15.93■□□□□ 0.14
CNOT1-220ENST00000569916 DCAF15Q66K64 600 aa15.93■□□□□ 0.14
CNOT1-220ENST00000569916 NAA16Q6N069 864 aaPredicted RBP15.93■□□□□ 0.14
CNOT1-220ENST00000569916 WRNIP1Q96S55 665 aa15.93■□□□□ 0.14
CNOT1-220ENST00000569916 DOCK1Q14185 1865 aa15.93■□□□□ 0.14
CNOT1-220ENST00000569916 COL2A1P02458 1487 aaPredicted RBP15.92■□□□□ 0.14
CNOT1-220ENST00000569916 IGSF3O75054 1194 aa15.92■□□□□ 0.14
CNOT1-220ENST00000569916 PICALMQ13492 652 aa15.92■□□□□ 0.14
CNOT1-220ENST00000569916 MIGA2Q7L4E1 593 aa15.92■□□□□ 0.14
CNOT1-220ENST00000569916 SH3BP5LQ7L8J4 393 aa15.92■□□□□ 0.14
CNOT1-220ENST00000569916 ADGRA1Q86SQ6 560 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms