RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 CPA4Q9UI42 421 aa14.18□□□□□ -0.14
CLN3-226ENST00000567160 AOX1Q06278 1338 aa14.17□□□□□ -0.14
CLN3-226ENST00000567160 TCP10L2B9ZVM9 353 aa14.17□□□□□ -0.14
CLN3-226ENST00000567160 IRF6O14896 467 aa14.17□□□□□ -0.14
CLN3-226ENST00000567160 TRIM27P14373 513 aa14.17□□□□□ -0.14
CLN3-226ENST00000567160 PPIL2Q13356 520 aa14.17□□□□□ -0.14
CLN3-226ENST00000567160 SLC4A10Q6U841 1118 aa14.17□□□□□ -0.14
CLN3-226ENST00000567160 ARHGAP45Q92619 1136 aa14.17□□□□□ -0.14
CLN3-226ENST00000567160 TMEM39BQ9GZU3 492 aa14.17□□□□□ -0.14
CLN3-226ENST00000567160 TDRD3Q9H7E2 651 aaKnown RBP14.17□□□□□ -0.14
CLN3-226ENST00000567160 TFRCP02786 760 aaKnown RBP14.16□□□□□ -0.14
CLN3-226ENST00000567160 IGKV5-2P06315 115 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 CTGFP29279 349 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 FCGRTP55899 365 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 LRIT3Q3SXY7 679 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 UBE3BQ7Z3V4 1068 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 ANKRD23Q86SG2 305 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 DNAAF4Q8WXU2 420 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 WRNIP1Q96S55 665 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 UNC93B1Q9H1C4 597 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 MTMR10Q9NXD2 777 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 TTF2Q9UNY4 1162 aaKnown RBP14.16□□□□□ -0.14
CLN3-226ENST00000567160 SNCAIPQ9Y6H5 919 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 MGAMO43451 1857 aa14.16□□□□□ -0.14
CLN3-226ENST00000567160 IRS2Q9Y4H2 1338 aa14.15□□□□□ -0.14
CLN3-226ENST00000567160 PRKCZQ05513 592 aa14.15□□□□□ -0.14
CLN3-226ENST00000567160 Q7L0L9 218 aa14.15□□□□□ -0.14
CLN3-226ENST00000567160 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.15□□□□□ -0.14
CLN3-226ENST00000567160 CDAN1Q8IWY9 1227 aa14.15□□□□□ -0.14
CLN3-226ENST00000567160 FTSJ3Q8IY81 847 aaKnown RBP14.15□□□□□ -0.14
CLN3-226ENST00000567160 DZIP1LQ8IYY4 767 aaKnown RBP14.15□□□□□ -0.14
CLN3-226ENST00000567160 PANK1Q8TE04 598 aa14.15□□□□□ -0.14
CLN3-226ENST00000567160 GDF15Q99988 308 aa14.15□□□□□ -0.14
CLN3-226ENST00000567160 PLA2G12BQ9BX93 195 aa14.15□□□□□ -0.14
CLN3-226ENST00000567160 JAG2Q9Y219 1238 aa14.15□□□□□ -0.14
CLN3-226ENST00000567160 ANKRD18BA2A2Z9 1011 aa14.14□□□□□ -0.15
CLN3-226ENST00000567160 H7C1W4 665 aa14.14□□□□□ -0.15
CLN3-226ENST00000567160 PDHXO00330 501 aa14.14□□□□□ -0.15
CLN3-226ENST00000567160 TAF5LO75529 589 aa14.14□□□□□ -0.15
CLN3-226ENST00000567160 RLBP1P12271 317 aa14.14□□□□□ -0.15
CLN3-226ENST00000567160 PPATQ06203 517 aa14.14□□□□□ -0.15
CLN3-226ENST00000567160 MFSD14BQ5SR56 506 aa14.14□□□□□ -0.15
CLN3-226ENST00000567160 C20orf194Q5TEA3 1177 aa14.14□□□□□ -0.15
CLN3-226ENST00000567160 A0A1B0GUL6 1792 aa14.14□□□□□ -0.15
CLN3-226ENST00000567160 FAM205AQ6ZU69 1335 aa14.14□□□□□ -0.15
CLN3-226ENST00000567160 ADGRA2Q96PE1 1338 aa14.14□□□□□ -0.15
CLN3-226ENST00000567160 ALPK3Q96L96 1907 aa14.13□□□□□ -0.15
CLN3-226ENST00000567160 NEURL1BA8MQ27 555 aa14.13□□□□□ -0.15
CLN3-226ENST00000567160 CWF19L2Q2TBE0 894 aaKnown RBP14.13□□□□□ -0.15
CLN3-226ENST00000567160 DCAF15Q66K64 600 aa14.13□□□□□ -0.15
CLN3-226ENST00000567160 NECAB2Q7Z6G3 386 aa14.13□□□□□ -0.15
CLN3-226ENST00000567160 ZKSCAN4Q969J2 545 aaPredicted RBP14.13□□□□□ -0.15
CLN3-226ENST00000567160 PARK7Q99497 189 aaKnown RBP14.13□□□□□ -0.15
CLN3-226ENST00000567160 TMOD2Q9NZR1 351 aa14.13□□□□□ -0.15
CLN3-226ENST00000567160 SNAP23O00161 211 aa14.12□□□□□ -0.15
CLN3-226ENST00000567160 ADCY3O60266 1144 aa14.12□□□□□ -0.15
CLN3-226ENST00000567160 CSF1RP07333 972 aa14.12□□□□□ -0.15
CLN3-226ENST00000567160 MS4A1P11836 297 aa14.12□□□□□ -0.15
CLN3-226ENST00000567160 CRKP46108 304 aa14.12□□□□□ -0.15
CLN3-226ENST00000567160 IRX6P78412 446 aaPredicted RBP14.12□□□□□ -0.15
CLN3-226ENST00000567160 TDHQ8IZJ6 230 aa14.12□□□□□ -0.15
CLN3-226ENST00000567160 TMEM57Q8N5G2 664 aa14.12□□□□□ -0.15
CLN3-226ENST00000567160 PXYLP1Q8TE99 480 aa14.12□□□□□ -0.15
CLN3-226ENST00000567160 DEFB118Q96PH6 123 aa14.12□□□□□ -0.15
CLN3-226ENST00000567160 INHAP05111 366 aa14.11□□□□□ -0.15
CLN3-226ENST00000567160 BCAMP50895 628 aa14.11□□□□□ -0.15
CLN3-226ENST00000567160 BEND3Q5T5X7 828 aa14.11□□□□□ -0.15
CLN3-226ENST00000567160 ITPRIPQ8IWB1 547 aa14.11□□□□□ -0.15
CLN3-226ENST00000567160 C7orf61Q8IZ16 206 aa14.11□□□□□ -0.15
CLN3-226ENST00000567160 PAWRQ96IZ0 340 aaKnown RBP14.11□□□□□ -0.15
CLN3-226ENST00000567160 SRCIN1Q9C0H9 1055 aa14.11□□□□□ -0.15
CLN3-226ENST00000567160 IFIT5Q13325 482 aaKnown RBP14.1□□□□□ -0.15
CLN3-226ENST00000567160 PDE3AQ14432 1141 aa14.1□□□□□ -0.15
CLN3-226ENST00000567160 FAM83AQ86UY5 434 aa14.1□□□□□ -0.15
CLN3-226ENST00000567160 ANKLE1Q8NAG6 615 aa14.1□□□□□ -0.15
CLN3-226ENST00000567160 LINS1Q8NG48 757 aa14.1□□□□□ -0.15
CLN3-226ENST00000567160 ZNF341Q9BYN7 854 aa14.1□□□□□ -0.15
CLN3-226ENST00000567160 CRISPLD2Q9H0B8 497 aa14.1□□□□□ -0.15
CLN3-226ENST00000567160 PAK6Q9NQU5 681 aaPredicted RBP14.1□□□□□ -0.15
CLN3-226ENST00000567160 COG6Q9Y2V7 657 aa14.1□□□□□ -0.15
CLN3-226ENST00000567160 BCRP11274 1271 aa14.09□□□□□ -0.15
CLN3-226ENST00000567160 IRF5Q13568 498 aa14.09□□□□□ -0.15
CLN3-226ENST00000567160 GCKRQ14397 625 aa14.09□□□□□ -0.15
CLN3-226ENST00000567160 ZMYND8Q9ULU4 1186 aaPredicted RBP14.09□□□□□ -0.15
CLN3-226ENST00000567160 GABRQQ9UN88 632 aa14.09□□□□□ -0.15
CLN3-226ENST00000567160 KCNH4Q9UQ05 1017 aa14.09□□□□□ -0.15
CLN3-226ENST00000567160 RPTORQ8N122 1335 aa14.09□□□□□ -0.15
CLN3-226ENST00000567160 RPAP1Q9BWH6 1393 aaPredicted RBP14.09□□□□□ -0.15
CLN3-226ENST00000567160 ALDH1L1O75891 902 aa14.08□□□□□ -0.16
CLN3-226ENST00000567160 ELNP15502 786 aa14.08□□□□□ -0.16
CLN3-226ENST00000567160 MAGEA10P43363 369 aaPredicted RBP14.08□□□□□ -0.16
CLN3-226ENST00000567160 FLT3LGP49771 235 aa14.08□□□□□ -0.16
CLN3-226ENST00000567160 HDLBPQ00341 1268 aaKnown RBP14.08□□□□□ -0.16
CLN3-226ENST00000567160 MVPQ14764 893 aaKnown RBP14.08□□□□□ -0.16
CLN3-226ENST00000567160 FKBP1CQ5VVH2 108 aa14.08□□□□□ -0.16
CLN3-226ENST00000567160 TDRD7Q8NHU6 1098 aaKnown RBP14.08□□□□□ -0.16
CLN3-226ENST00000567160 TEKT1Q969V4 418 aa14.08□□□□□ -0.16
CLN3-226ENST00000567160 CRBNQ96SW2 442 aa14.08□□□□□ -0.16
CLN3-226ENST00000567160 UBE2OQ9C0C9 1292 aaKnown RBP14.08□□□□□ -0.16
CLN3-226ENST00000567160 PRDM6Q9NQX0 595 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms