RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 TMOD2Q9NZR1 351 aa13.41□□□□□ -0.26
VPS39-208ENST00000564994 AKAP2Q9Y2D5 859 aa13.41□□□□□ -0.26
VPS39-208ENST00000564994 RPAP1Q9BWH6 1393 aaPredicted RBP13.41□□□□□ -0.26
VPS39-208ENST00000564994 INHBEP58166 350 aa13.4□□□□□ -0.26
VPS39-208ENST00000564994 MAP3K9P80192 1104 aa13.4□□□□□ -0.26
VPS39-208ENST00000564994 POLA2Q14181 598 aa13.4□□□□□ -0.26
VPS39-208ENST00000564994 NOM1Q5C9Z4 860 aaKnown RBP13.4□□□□□ -0.26
VPS39-208ENST00000564994 NEUROD6Q96NK8 337 aa13.4□□□□□ -0.26
VPS39-208ENST00000564994 PTPN18Q99952 460 aa13.4□□□□□ -0.26
VPS39-208ENST00000564994 PDS5AQ29RF7 1337 aaKnown RBP13.39□□□□□ -0.27
VPS39-208ENST00000564994 DOCK2Q92608 1830 aa13.39□□□□□ -0.27
VPS39-208ENST00000564994 TESPA1A2RU30 521 aaPredicted RBP13.39□□□□□ -0.27
VPS39-208ENST00000564994 ZBTB7BO15156 539 aaPredicted RBP13.39□□□□□ -0.27
VPS39-208ENST00000564994 ATP8B2P98198 1209 aa13.39□□□□□ -0.27
VPS39-208ENST00000564994 TCP10Q12799 353 aa13.39□□□□□ -0.27
VPS39-208ENST00000564994 MVPQ14764 893 aaKnown RBP13.39□□□□□ -0.27
VPS39-208ENST00000564994 FTSJ3Q8IY81 847 aaKnown RBP13.39□□□□□ -0.27
VPS39-208ENST00000564994 SSH3Q8TE77 659 aa13.39□□□□□ -0.27
VPS39-208ENST00000564994 FAM151AQ8WW52 585 aa13.39□□□□□ -0.27
VPS39-208ENST00000564994 MS4A4AQ96JQ5 239 aa13.39□□□□□ -0.27
VPS39-208ENST00000564994 USP40Q9NVE5 1235 aa13.39□□□□□ -0.27
VPS39-208ENST00000564994 FAM198AQ9UFP1 575 aa13.39□□□□□ -0.27
VPS39-208ENST00000564994 SNCAIPQ9Y6H5 919 aa13.39□□□□□ -0.27
VPS39-208ENST00000564994 MYO5AQ9Y4I1 1855 aaKnown RBP13.39□□□□□ -0.27
VPS39-208ENST00000564994 GAKO14976 1311 aa13.39□□□□□ -0.27
VPS39-208ENST00000564994 HTTP42858 3142 aa13.38□□□□□ -0.27
VPS39-208ENST00000564994 ALDH1A1P00352 501 aa13.38□□□□□ -0.27
VPS39-208ENST00000564994 G3BP1Q13283 466 aaKnown RBP eCLIP13.38□□□□□ -0.27
VPS39-208ENST00000564994 PI16Q6UXB8 463 aa13.38□□□□□ -0.27
VPS39-208ENST00000564994 MIGA2Q7L4E1 593 aa13.38□□□□□ -0.27
VPS39-208ENST00000564994 ITPRIPQ8IWB1 547 aa13.38□□□□□ -0.27
VPS39-208ENST00000564994 ZFPM1Q8IX07 1006 aa13.38□□□□□ -0.27
VPS39-208ENST00000564994 ZGPATQ8N5A5 531 aaKnown RBP13.38□□□□□ -0.27
VPS39-208ENST00000564994 ZNF384Q8TF68 577 aa13.38□□□□□ -0.27
VPS39-208ENST00000564994 ZKSCAN4Q969J2 545 aaPredicted RBP13.38□□□□□ -0.27
VPS39-208ENST00000564994 WRNIP1Q96S55 665 aa13.38□□□□□ -0.27
VPS39-208ENST00000564994 HMG20BQ9P0W2 317 aa13.38□□□□□ -0.27
VPS39-208ENST00000564994 ABCF2Q9UG63 623 aa13.38□□□□□ -0.27
VPS39-208ENST00000564994 RFX7Q2KHR2 1363 aa13.37□□□□□ -0.27
VPS39-208ENST00000564994 SPDYE5A6NIY4 337 aa13.37□□□□□ -0.27
VPS39-208ENST00000564994 FKTNO75072 461 aa13.37□□□□□ -0.27
VPS39-208ENST00000564994 RGS19P49795 217 aa13.37□□□□□ -0.27
VPS39-208ENST00000564994 BRI3BPQ8WY22 251 aa13.37□□□□□ -0.27
VPS39-208ENST00000564994 OTUD5Q96G74 571 aa13.37□□□□□ -0.27
VPS39-208ENST00000564994 CSADQ9Y600 493 aa13.37□□□□□ -0.27
VPS39-208ENST00000564994 TNRC18O15417 2968 aaPredicted RBP13.36□□□□□ -0.27
VPS39-208ENST00000564994 CENPFP49454 3210 aa13.36□□□□□ -0.27
VPS39-208ENST00000564994 ARID4AP29374 1257 aaPredicted RBP13.36□□□□□ -0.27
VPS39-208ENST00000564994 INPP5BP32019 993 aa13.36□□□□□ -0.27
VPS39-208ENST00000564994 CRHR2Q13324 411 aa13.36□□□□□ -0.27
VPS39-208ENST00000564994 DCAF15Q66K64 600 aa13.36□□□□□ -0.27
VPS39-208ENST00000564994 TBC1D9Q6ZT07 1266 aa13.36□□□□□ -0.27
VPS39-208ENST00000564994 DZIP1Q86YF9 867 aaKnown RBP13.36□□□□□ -0.27
VPS39-208ENST00000564994 SPATA5Q8NB90 893 aa13.36□□□□□ -0.27
VPS39-208ENST00000564994 PANK1Q8TE04 598 aa13.36□□□□□ -0.27
VPS39-208ENST00000564994 HOOK2Q96ED9 719 aa13.36□□□□□ -0.27
VPS39-208ENST00000564994 FAM163AQ96GL9 167 aaPredicted RBP13.36□□□□□ -0.27
VPS39-208ENST00000564994 ZNF341Q9BYN7 854 aa13.36□□□□□ -0.27
VPS39-208ENST00000564994 ATRNL1Q5VV63 1379 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 CCL15-CCL14A0A0B4J2E2 113 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 SURF6O75683 361 aaKnown RBP13.35□□□□□ -0.27
VPS39-208ENST00000564994 MCAMP43121 646 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 RGS3P49796 1198 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 MECOMQ03112 1051 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 CCL15Q16663 113 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 TNNI3KQ59H18 835 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 GORABQ5T7V8 394 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 ERICH6Q7L0X2 663 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 SH3BP5LQ7L8J4 393 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 ERO1BQ86YB8 467 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 IDI2Q9BXS1 227 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 GPR108Q9NPR9 543 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 ZNF112Q9UJU3 913 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 HPS5Q9UPZ3 1129 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 NOP58Q9Y2X3 529 aaKnown RBP13.35□□□□□ -0.27
VPS39-208ENST00000564994 FPGT-TNNI3KV9GXZ4 949 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 MROH7-TTC4A0A0A0MT08 1334 aa13.35□□□□□ -0.27
VPS39-208ENST00000564994 CDK5RAP2Q96SN8 1893 aa13.34□□□□□ -0.27
VPS39-208ENST00000564994 IRF6O14896 467 aa13.34□□□□□ -0.27
VPS39-208ENST00000564994 WDHD1O75717 1129 aaPredicted RBP13.34□□□□□ -0.27
VPS39-208ENST00000564994 BTDP43251 543 aa13.34□□□□□ -0.27
VPS39-208ENST00000564994 GTF2A2P52657 109 aa13.34□□□□□ -0.27
VPS39-208ENST00000564994 CAP1Q01518 475 aa13.34□□□□□ -0.27
VPS39-208ENST00000564994 PKN2Q16513 984 aaKnown RBP13.34□□□□□ -0.27
VPS39-208ENST00000564994 SPTY2D1Q68D10 685 aaPredicted RBP13.34□□□□□ -0.27
VPS39-208ENST00000564994 OTUD7BQ6GQQ9 843 aa13.34□□□□□ -0.27
VPS39-208ENST00000564994 CEP85Q6P2H3 762 aa13.34□□□□□ -0.27
VPS39-208ENST00000564994 FAM43AQ8N2R8 423 aa13.34□□□□□ -0.27
VPS39-208ENST00000564994 NSUN4Q96CB9 384 aaKnown RBP13.34□□□□□ -0.27
VPS39-208ENST00000564994 DBNDD2Q9BQY9 259 aa13.34□□□□□ -0.27
VPS39-208ENST00000564994 DDX4Q9NQI0 724 aaKnown RBP13.34□□□□□ -0.27
VPS39-208ENST00000564994 MAST2Q6P0Q8 1798 aa13.33□□□□□ -0.28
VPS39-208ENST00000564994 GPR75-ASB3A0A0A6YYF3 556 aa13.33□□□□□ -0.28
VPS39-208ENST00000564994 ENTPD3O75355 529 aa13.33□□□□□ -0.28
VPS39-208ENST00000564994 UQCRFS1P1P0C7P4 283 aa13.33□□□□□ -0.28
VPS39-208ENST00000564994 SLURP2P0DP57 97 aa13.33□□□□□ -0.28
VPS39-208ENST00000564994 RHBDL3P58872 404 aa13.33□□□□□ -0.28
VPS39-208ENST00000564994 PPIL2Q13356 520 aa13.33□□□□□ -0.28
VPS39-208ENST00000564994 OS9Q13438 667 aaPredicted RBP13.33□□□□□ -0.28
VPS39-208ENST00000564994 SLF2Q8IX21 1173 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms