RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CEP126Q9P2H0 1117 aa21.04■□□□□ 0.96
CLN3-211ENST00000564091 EN2P19622 333 aaPredicted RBP21.03■□□□□ 0.96
CLN3-211ENST00000564091 INPP5BP32019 993 aa21.03■□□□□ 0.96
CLN3-211ENST00000564091 NFIAQ12857 509 aa21.03■□□□□ 0.96
CLN3-211ENST00000564091 PPIL2Q13356 520 aa21.03■□□□□ 0.96
CLN3-211ENST00000564091 SNAPC2Q13487 334 aa21.03■□□□□ 0.96
CLN3-211ENST00000564091 FAM151AQ8WW52 585 aa21.03■□□□□ 0.96
CLN3-211ENST00000564091 PA2G4Q9UQ80 394 aaKnown RBP21.03■□□□□ 0.96
CLN3-211ENST00000564091 LRRFIP2Q9Y608 721 aaKnown RBP21.03■□□□□ 0.96
CLN3-211ENST00000564091 PTCH2Q9Y6C5 1203 aa21.03■□□□□ 0.96
CLN3-211ENST00000564091 ECM29Q5VYK3 1845 aa21.03■□□□□ 0.96
CLN3-211ENST00000564091 CIAO1O76071 339 aa21.02■□□□□ 0.96
CLN3-211ENST00000564091 ARHGEF6Q15052 776 aa21.02■□□□□ 0.96
CLN3-211ENST00000564091 ARHGAP39Q9C0H5 1083 aa21.02■□□□□ 0.96
CLN3-211ENST00000564091 GNL3LQ9NVN8 582 aaKnown RBP21.02■□□□□ 0.96
CLN3-211ENST00000564091 TLR2O60603 784 aa21.01■□□□□ 0.95
CLN3-211ENST00000564091 WDHD1O75717 1129 aaPredicted RBP21.01■□□□□ 0.95
CLN3-211ENST00000564091 ECM2O94769 699 aaPredicted RBP21.01■□□□□ 0.95
CLN3-211ENST00000564091 PHKA1P46020 1223 aa21.01■□□□□ 0.95
CLN3-211ENST00000564091 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.01■□□□□ 0.95
CLN3-211ENST00000564091 USP40Q9NVE5 1235 aa21.01■□□□□ 0.95
CLN3-211ENST00000564091 FBXO3Q9UK99 471 aa21.01■□□□□ 0.95
CLN3-211ENST00000564091 LDHBP07195 334 aaKnown RBP21■□□□□ 0.95
CLN3-211ENST00000564091 ADORA1P30542 326 aa21■□□□□ 0.95
CLN3-211ENST00000564091 IL15P40933 162 aaPredicted RBP21■□□□□ 0.95
CLN3-211ENST00000564091 PPATQ06203 517 aa21■□□□□ 0.95
CLN3-211ENST00000564091 ZFPM1Q8IX07 1006 aa21■□□□□ 0.95
CLN3-211ENST00000564091 ZNF333Q96JL9 665 aa21■□□□□ 0.95
CLN3-211ENST00000564091 API5Q9BZZ5 524 aaKnown RBP21■□□□□ 0.95
CLN3-211ENST00000564091 FAM198AQ9UFP1 575 aa21■□□□□ 0.95
CLN3-211ENST00000564091 RPAP1Q9BWH6 1393 aaPredicted RBP20.99■□□□□ 0.95
CLN3-211ENST00000564091 MYCP01106 439 aaPredicted RBP20.99■□□□□ 0.95
CLN3-211ENST00000564091 SLC9C1Q4G0N8 1177 aa20.99■□□□□ 0.95
CLN3-211ENST00000564091 MEIS3Q99687 375 aa20.99■□□□□ 0.95
CLN3-211ENST00000564091 TMEM106CQ9BVX2 250 aa20.99■□□□□ 0.95
CLN3-211ENST00000564091 ZCCHC17Q9NP64 241 aaKnown RBP20.99■□□□□ 0.95
CLN3-211ENST00000564091 ZNF112Q9UJU3 913 aa20.99■□□□□ 0.95
CLN3-211ENST00000564091 DENND2AQ9ULE3 1009 aa20.99■□□□□ 0.95
CLN3-211ENST00000564091 LACTBP83111 547 aaPredicted RBP20.98■□□□□ 0.95
CLN3-211ENST00000564091 KIAA0100Q14667 2235 aaKnown RBP20.98■□□□□ 0.95
CLN3-211ENST00000564091 OTOFQ9HC10 1997 aa20.97■□□□□ 0.95
CLN3-211ENST00000564091 CT47B1P0C2W7 299 aaPredicted RBP20.97■□□□□ 0.95
CLN3-211ENST00000564091 KIF22Q14807 665 aa20.97■□□□□ 0.95
CLN3-211ENST00000564091 CCDC102BQ68D86 513 aa20.97■□□□□ 0.95
CLN3-211ENST00000564091 NBPF11Q86T75 865 aa20.97■□□□□ 0.95
CLN3-211ENST00000564091 COPRSQ9NQ92 184 aa20.97■□□□□ 0.95
CLN3-211ENST00000564091 CPA4Q9UI42 421 aa20.97■□□□□ 0.95
CLN3-211ENST00000564091 SALL1Q9NSC2 1324 aa20.97■□□□□ 0.95
CLN3-211ENST00000564091 ARAP2Q8WZ64 1704 aa20.96■□□□□ 0.95
CLN3-211ENST00000564091 SEMA3EO15041 775 aa20.96■□□□□ 0.95
CLN3-211ENST00000564091 TIMM10P62072 90 aa20.96■□□□□ 0.95
CLN3-211ENST00000564091 SH3TC2Q8TF17 1288 aa20.96■□□□□ 0.95
CLN3-211ENST00000564091 HDAC5Q9UQL6 1122 aa20.96■□□□□ 0.95
CLN3-211ENST00000564091 PDHXO00330 501 aa20.95■□□□□ 0.94
CLN3-211ENST00000564091 RARSP54136 660 aaKnown RBP20.95■□□□□ 0.94
CLN3-211ENST00000564091 SLC4A8Q2Y0W8 1093 aa20.95■□□□□ 0.94
CLN3-211ENST00000564091 C17orf99Q6UX52 265 aa20.95■□□□□ 0.94
CLN3-211ENST00000564091 ANKRD23Q86SG2 305 aa20.95■□□□□ 0.94
CLN3-211ENST00000564091 KCNH4Q9UQ05 1017 aa20.95■□□□□ 0.94
CLN3-211ENST00000564091 CTGFP29279 349 aa20.94■□□□□ 0.94
CLN3-211ENST00000564091 RGS3P49796 1198 aa20.94■□□□□ 0.94
CLN3-211ENST00000564091 MOGSQ13724 837 aa20.94■□□□□ 0.94
CLN3-211ENST00000564091 RASGRF1Q13972 1273 aa20.94■□□□□ 0.94
CLN3-211ENST00000564091 NOL9Q5SY16 702 aaKnown RBP20.94■□□□□ 0.94
CLN3-211ENST00000564091 PCDH10Q9P2E7 1040 aa20.94■□□□□ 0.94
CLN3-211ENST00000564091 ABCF2Q9UG63 623 aa20.94■□□□□ 0.94
CLN3-211ENST00000564091 SLURP2P0DP57 97 aa20.93■□□□□ 0.94
CLN3-211ENST00000564091 SRGAP3O43295 1099 aa20.92■□□□□ 0.94
CLN3-211ENST00000564091 PSMC4P43686 418 aa20.92■□□□□ 0.94
CLN3-211ENST00000564091 TFCP2Q12800 502 aa20.92■□□□□ 0.94
CLN3-211ENST00000564091 SH3BP5LQ7L8J4 393 aa20.92■□□□□ 0.94
CLN3-211ENST00000564091 DZIP1Q86YF9 867 aaKnown RBP20.92■□□□□ 0.94
CLN3-211ENST00000564091 ZGPATQ8N5A5 531 aaKnown RBP20.92■□□□□ 0.94
CLN3-211ENST00000564091 IDI2Q9BXS1 227 aa20.92■□□□□ 0.94
CLN3-211ENST00000564091 GAKO14976 1311 aa20.92■□□□□ 0.94
CLN3-211ENST00000564091 LAMB1P07942 1786 aa20.92■□□□□ 0.94
CLN3-211ENST00000564091 A0A1B0GUL7 405 aa20.91■□□□□ 0.94
CLN3-211ENST00000564091 PHF20L1A8MW92 1017 aa20.91■□□□□ 0.94
CLN3-211ENST00000564091 GNRH1P01148 92 aa20.91■□□□□ 0.94
CLN3-211ENST00000564091 ZSCAN29Q8IWY8 852 aaPredicted RBP20.91■□□□□ 0.94
CLN3-211ENST00000564091 GCC1Q96CN9 775 aa20.91■□□□□ 0.94
CLN3-211ENST00000564091 XAGE2Q96GT9 111 aa20.91■□□□□ 0.94
CLN3-211ENST00000564091 TRIM47Q96LD4 638 aa20.91■□□□□ 0.94
CLN3-211ENST00000564091 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.91■□□□□ 0.94
CLN3-211ENST00000564091 ATRNL1Q5VV63 1379 aa20.9■□□□□ 0.94
CLN3-211ENST00000564091 CXCL11O14625 94 aa20.9■□□□□ 0.94
CLN3-211ENST00000564091 ZBTB22O15209 634 aa20.9■□□□□ 0.94
CLN3-211ENST00000564091 ENTPD3O75355 529 aa20.9■□□□□ 0.94
CLN3-211ENST00000564091 CYP2C8P10632 490 aa20.9■□□□□ 0.94
CLN3-211ENST00000564091 GPAT2Q6NUI2 795 aa20.9■□□□□ 0.94
CLN3-211ENST00000564091 DDX4Q9NQI0 724 aaKnown RBP20.9■□□□□ 0.94
CLN3-211ENST00000564091 ZHX2Q9Y6X8 837 aa20.9■□□□□ 0.94
CLN3-211ENST00000564091 ADGRA2Q96PE1 1338 aa20.89■□□□□ 0.93
CLN3-211ENST00000564091 DDTLA6NHG4 134 aaPredicted RBP20.89■□□□□ 0.93
CLN3-211ENST00000564091 FMNL1O95466 1100 aaPredicted RBP20.89■□□□□ 0.93
CLN3-211ENST00000564091 GNAI3P08754 354 aa20.89■□□□□ 0.93
CLN3-211ENST00000564091 BTDP43251 543 aa20.89■□□□□ 0.93
CLN3-211ENST00000564091 PRMT2P55345 433 aa20.89■□□□□ 0.93
CLN3-211ENST00000564091 PICALMQ13492 652 aa20.89■□□□□ 0.93
CLN3-211ENST00000564091 SCYL3Q8IZE3 742 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms