RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 LDHAL6AQ6ZMR3 332 aa13.21□□□□□ -0.29
SF3B3-204ENST00000563739 SUCLG2Q96I99 432 aa13.21□□□□□ -0.29
SF3B3-204ENST00000563739 GABRQQ9UN88 632 aa13.21□□□□□ -0.29
SF3B3-204ENST00000563739 CSADQ9Y600 493 aa13.21□□□□□ -0.29
SF3B3-204ENST00000563739 LOC285556D6RIA3 1793 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 IL16Q14005 1332 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 GRK4P32298 578 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 PSMC4P43686 418 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 PRMT2P55345 433 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 HDLBPQ00341 1268 aaKnown RBP13.2□□□□□ -0.3
SF3B3-204ENST00000563739 PRKCZQ05513 592 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 SNAPC2Q13487 334 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 ANKRD23Q86SG2 305 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 FAM83AQ86UY5 434 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.2□□□□□ -0.3
SF3B3-204ENST00000563739 ZDHHC15Q96MV8 337 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 UNC93B1Q9H1C4 597 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 SPINK5Q9NQ38 1064 aaPredicted RBP13.2□□□□□ -0.3
SF3B3-204ENST00000563739 ZNF112Q9UJU3 913 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 CHMP3Q9Y3E7 222 aa13.2□□□□□ -0.3
SF3B3-204ENST00000563739 DDX60LQ5H9U9 1706 aaKnown RBP13.19□□□□□ -0.3
SF3B3-204ENST00000563739 GRM8O00222 908 aa13.19□□□□□ -0.3
SF3B3-204ENST00000563739 GNRH1P01148 92 aa13.19□□□□□ -0.3
SF3B3-204ENST00000563739 LRRC24Q50LG9 513 aa13.19□□□□□ -0.3
SF3B3-204ENST00000563739 ANKRD44Q8N8A2 993 aa13.19□□□□□ -0.3
SF3B3-204ENST00000563739 EYSQ5T1H1 3165 aa13.18□□□□□ -0.3
SF3B3-204ENST00000563739 MYPNQ86TC9 1320 aa13.18□□□□□ -0.3
SF3B3-204ENST00000563739 LAMA2P24043 3122 aaKnown RBP13.18□□□□□ -0.3
SF3B3-204ENST00000563739 VCANP13611 3396 aa13.18□□□□□ -0.3
SF3B3-204ENST00000563739 PDHXO00330 501 aa13.18□□□□□ -0.3
SF3B3-204ENST00000563739 SLURP2P0DP57 97 aa13.18□□□□□ -0.3
SF3B3-204ENST00000563739 PPATQ06203 517 aa13.18□□□□□ -0.3
SF3B3-204ENST00000563739 NFIAQ12857 509 aa13.18□□□□□ -0.3
SF3B3-204ENST00000563739 ARHGEF6Q15052 776 aa13.18□□□□□ -0.3
SF3B3-204ENST00000563739 FKBP1CQ5VVH2 108 aa13.18□□□□□ -0.3
SF3B3-204ENST00000563739 U2AF1L4Q8WU68 220 aaKnown RBP13.18□□□□□ -0.3
SF3B3-204ENST00000563739 CHMP4AQ9BY43 222 aa13.18□□□□□ -0.3
SF3B3-204ENST00000563739 CNNM1Q9NRU3 951 aa13.18□□□□□ -0.3
SF3B3-204ENST00000563739 UTYO14607 1347 aa13.17□□□□□ -0.3
SF3B3-204ENST00000563739 FARP2O94887 1054 aaPredicted RBP13.17□□□□□ -0.3
SF3B3-204ENST00000563739 FGFR2P21802 821 aa13.17□□□□□ -0.3
SF3B3-204ENST00000563739 TNNI2P48788 182 aa13.17□□□□□ -0.3
SF3B3-204ENST00000563739 CHAF1AQ13111 956 aaPredicted RBP13.17□□□□□ -0.3
SF3B3-204ENST00000563739 RABL6Q3YEC7 729 aaPredicted RBP13.17□□□□□ -0.3
SF3B3-204ENST00000563739 NOL9Q5SY16 702 aaKnown RBP13.17□□□□□ -0.3
SF3B3-204ENST00000563739 MIGA2Q7L4E1 593 aa13.17□□□□□ -0.3
SF3B3-204ENST00000563739 DPF3Q92784 378 aa13.17□□□□□ -0.3
SF3B3-204ENST00000563739 AK9Q5TCS8 1911 aa13.17□□□□□ -0.3
SF3B3-204ENST00000563739 SIPA1L1O43166 1804 aa13.16□□□□□ -0.3
SF3B3-204ENST00000563739 ATAD5Q96QE3 1844 aa13.16□□□□□ -0.3
SF3B3-204ENST00000563739 NBPF7P0C2Y1 421 aaPredicted RBP13.16□□□□□ -0.3
SF3B3-204ENST00000563739 CYP2C8P10632 490 aa13.16□□□□□ -0.3
SF3B3-204ENST00000563739 MNX1P50219 401 aaPredicted RBP13.16□□□□□ -0.3
SF3B3-204ENST00000563739 BCAMP50895 628 aa13.16□□□□□ -0.3
SF3B3-204ENST00000563739 EXOSC9Q06265 439 aaKnown RBP13.16□□□□□ -0.3
SF3B3-204ENST00000563739 CCDC57Q2TAC2 916 aa13.16□□□□□ -0.3
SF3B3-204ENST00000563739 ZFPM1Q8IX07 1006 aa13.16□□□□□ -0.3
SF3B3-204ENST00000563739 DIS3LQ8TF46 1054 aaKnown RBP13.16□□□□□ -0.3
SF3B3-204ENST00000563739 TEKT1Q969V4 418 aa13.16□□□□□ -0.3
SF3B3-204ENST00000563739 FAM198AQ9UFP1 575 aa13.16□□□□□ -0.3
SF3B3-204ENST00000563739 MYH2Q9UKX2 1941 aa13.15□□□□□ -0.3
SF3B3-204ENST00000563739 ELNP15502 786 aa13.15□□□□□ -0.3
SF3B3-204ENST00000563739 KIF22Q14807 665 aa13.15□□□□□ -0.3
SF3B3-204ENST00000563739 KLHDC4Q8TBB5 520 aa13.15□□□□□ -0.3
SF3B3-204ENST00000563739 MRIQ9BWK5 157 aa13.15□□□□□ -0.3
SF3B3-204ENST00000563739 ZNF341Q9BYN7 854 aa13.15□□□□□ -0.3
SF3B3-204ENST00000563739 RNF208Q9H0X6 261 aa13.15□□□□□ -0.3
SF3B3-204ENST00000563739 PAK6Q9NQU5 681 aaPredicted RBP13.15□□□□□ -0.3
SF3B3-204ENST00000563739 DAGLAQ9Y4D2 1042 aa13.15□□□□□ -0.3
SF3B3-204ENST00000563739 FRMPD3Q5JV73 1810 aa13.15□□□□□ -0.3
SF3B3-204ENST00000563739 A0A1W2PPC1 479 aa13.14□□□□□ -0.31
SF3B3-204ENST00000563739 PHF20L1A8MW92 1017 aa13.14□□□□□ -0.31
SF3B3-204ENST00000563739 SGPL1O95470 568 aa13.14□□□□□ -0.31
SF3B3-204ENST00000563739 CDC42EP5Q6NZY7 148 aa13.14□□□□□ -0.31
SF3B3-204ENST00000563739 HHIPL2Q6UWX4 724 aa13.14□□□□□ -0.31
SF3B3-204ENST00000563739 SH3BP5LQ7L8J4 393 aa13.14□□□□□ -0.31
SF3B3-204ENST00000563739 NKX2-3Q8TAU0 364 aa13.14□□□□□ -0.31
SF3B3-204ENST00000563739 RAET1EQ8TD07 263 aa13.14□□□□□ -0.31
SF3B3-204ENST00000563739 FAM151AQ8WW52 585 aa13.14□□□□□ -0.31
SF3B3-204ENST00000563739 GDF15Q99988 308 aa13.14□□□□□ -0.31
SF3B3-204ENST00000563739 CRISPLD2Q9H0B8 497 aa13.14□□□□□ -0.31
SF3B3-204ENST00000563739 BICC1Q9H694 974 aaKnown RBP13.14□□□□□ -0.31
SF3B3-204ENST00000563739 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.14□□□□□ -0.31
SF3B3-204ENST00000563739 MROH5Q6ZUA9 1318 aa13.13□□□□□ -0.31
SF3B3-204ENST00000563739 COL2A1P02458 1487 aaPredicted RBP13.13□□□□□ -0.31
SF3B3-204ENST00000563739 ALDH1L1O75891 902 aa13.13□□□□□ -0.31
SF3B3-204ENST00000563739 FMNL1O95466 1100 aaPredicted RBP13.13□□□□□ -0.31
SF3B3-204ENST00000563739 INHAP05111 366 aa13.13□□□□□ -0.31
SF3B3-204ENST00000563739 DIXDC1Q155Q3 683 aa13.13□□□□□ -0.31
SF3B3-204ENST00000563739 TAF7LQ5H9L4 462 aa13.13□□□□□ -0.31
SF3B3-204ENST00000563739 SLAIN1Q8ND83 568 aa13.13□□□□□ -0.31
SF3B3-204ENST00000563739 TBC1D22AQ8WUA7 517 aa13.13□□□□□ -0.31
SF3B3-204ENST00000563739 HTATIP2Q9BUP3 242 aa13.13□□□□□ -0.31
SF3B3-204ENST00000563739 STAP2Q9UGK3 403 aa13.13□□□□□ -0.31
SF3B3-204ENST00000563739 KIF16BQ96L93 1317 aa13.13□□□□□ -0.31
SF3B3-204ENST00000563739 MAST2Q6P0Q8 1798 aa13.12□□□□□ -0.31
SF3B3-204ENST00000563739 A0A0G2JLL6 359 aaPredicted RBP13.12□□□□□ -0.31
SF3B3-204ENST00000563739 PDE8BO95263 885 aa13.12□□□□□ -0.31
SF3B3-204ENST00000563739 PRDX5P30044 214 aa13.12□□□□□ -0.31
SF3B3-204ENST00000563739 RFX5P48382 616 aaPredicted RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms