RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 TIMM10P62072 90 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 SREBF2Q12772 1141 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 VGLL4Q14135 290 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 PI16Q6UXB8 463 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 ZNF384Q8TF68 577 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 ZNF296Q8WUU4 475 aaPredicted RBP11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 C1orf115Q9H7X2 142 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 ELP3Q9H9T3 547 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 SNCAIPQ9Y6H5 919 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 GAKO14976 1311 aa11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 PDS5AQ29RF7 1337 aaKnown RBP11.56□□□□□ -0.56
VIPAS39-207ENST00000555854 MYH2Q9UKX2 1941 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 UNCXA6NJT0 531 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 SEMA3EO15041 775 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 FKBP1CQ5VVH2 108 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 CDC42EP5Q6NZY7 148 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 FAM83AQ86UY5 434 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 IFNL1Q8IU54 200 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 ANKRD13AQ8IZ07 590 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 XAGE2Q96GT9 111 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 PTPN18Q99952 460 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 FAM198AQ9UFP1 575 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 HDAC5Q9UQL6 1122 aa11.55□□□□□ -0.56
VIPAS39-207ENST00000555854 DOCK2Q92608 1830 aa11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 TESPA1A2RU30 521 aaPredicted RBP11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 MANSC4A6NHS7 340 aaPredicted RBP11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 CCDC85CA6NKD9 419 aa11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 GPR25O00155 361 aa11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 TNNI2P48788 182 aa11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 CAP1Q01518 475 aa11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 NOM1Q5C9Z4 860 aaKnown RBP11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 CTU1Q7Z7A3 348 aaKnown RBP11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 PIP4P2Q8N4L2 257 aa11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 OPTNQ96CV9 577 aa11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 SLC10A4Q96EP9 437 aa11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 MS4A4AQ96JQ5 239 aa11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 DENND2AQ9ULE3 1009 aa11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 MAST2Q6P0Q8 1798 aa11.54□□□□□ -0.56
VIPAS39-207ENST00000555854 PITPNM1O00562 1244 aa11.53□□□□□ -0.56
VIPAS39-207ENST00000555854 LDHBP07195 334 aaKnown RBP11.53□□□□□ -0.56
VIPAS39-207ENST00000555854 ZFPM1Q8IX07 1006 aa11.53□□□□□ -0.56
VIPAS39-207ENST00000555854 SSH3Q8TE77 659 aa11.53□□□□□ -0.56
VIPAS39-207ENST00000555854 BRI3BPQ8WY22 251 aa11.53□□□□□ -0.56
VIPAS39-207ENST00000555854 GNL3LQ9NVN8 582 aaKnown RBP11.53□□□□□ -0.56
VIPAS39-207ENST00000555854 HMG20BQ9P0W2 317 aa11.53□□□□□ -0.56
VIPAS39-207ENST00000555854 SPDYE5A6NIY4 337 aa11.52□□□□□ -0.57
VIPAS39-207ENST00000555854 ZBTB7BO15156 539 aaPredicted RBP11.52□□□□□ -0.57
VIPAS39-207ENST00000555854 SLURP2P0DP57 97 aa11.52□□□□□ -0.57
VIPAS39-207ENST00000555854 ARID4AP29374 1257 aaPredicted RBP11.52□□□□□ -0.57
VIPAS39-207ENST00000555854 MAP3K9P80192 1104 aa11.52□□□□□ -0.57
VIPAS39-207ENST00000555854 SH3BP5LQ7L8J4 393 aa11.52□□□□□ -0.57
VIPAS39-207ENST00000555854 FAM151AQ8WW52 585 aa11.52□□□□□ -0.57
VIPAS39-207ENST00000555854 ZKSCAN4Q969J2 545 aaPredicted RBP11.52□□□□□ -0.57
VIPAS39-207ENST00000555854 WRNIP1Q96S55 665 aa11.52□□□□□ -0.57
VIPAS39-207ENST00000555854 DDX4Q9NQI0 724 aaKnown RBP11.52□□□□□ -0.57
VIPAS39-207ENST00000555854 TMOD2Q9NZR1 351 aa11.52□□□□□ -0.57
VIPAS39-207ENST00000555854 ZSWIM8A7E2V4 1837 aa11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 WDHD1O75717 1129 aaPredicted RBP11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 INPP5BP32019 993 aa11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 MCAMP43121 646 aa11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 RGS19P49795 217 aa11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 ATP8B2P98198 1209 aa11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 TCP10Q12799 353 aa11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 CRHR2Q13324 411 aa11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 MVPQ14764 893 aaKnown RBP11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 ITPRIPQ8IWB1 547 aa11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 PANK1Q8TE04 598 aa11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 OTUD5Q96G74 571 aa11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 TLR7Q9NYK1 1049 aaKnown RBP11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 AKAP2Q9Y2D5 859 aa11.51□□□□□ -0.57
VIPAS39-207ENST00000555854 FKTNO75072 461 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 ALDH1A1P00352 501 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 BTDP43251 543 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 RGS3P49796 1198 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 RHBDL3P58872 404 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 MECOMQ03112 1051 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 TNNI3KQ59H18 835 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 CEP85Q6P2H3 762 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 TBC1D9Q6ZT07 1266 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 MIGA2Q7L4E1 593 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 FTSJ3Q8IY81 847 aaKnown RBP11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 FAM43AQ8N2R8 423 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 FAM163AQ96GL9 167 aaPredicted RBP11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 DBNDD2Q9BQY9 259 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 IDI2Q9BXS1 227 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 USP40Q9NVE5 1235 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 ABCF2Q9UG63 623 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 ZNF112Q9UJU3 913 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 HPS5Q9UPZ3 1129 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 FPGT-TNNI3KV9GXZ4 949 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 SIPA1L1O43166 1804 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 MROH7-TTC4A0A0A0MT08 1334 aa11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 MYO5AQ9Y4I1 1855 aaKnown RBP11.5□□□□□ -0.57
VIPAS39-207ENST00000555854 CCL15-CCL14A0A0B4J2E2 113 aa11.49□□□□□ -0.57
VIPAS39-207ENST00000555854 IRF6O14896 467 aa11.49□□□□□ -0.57
VIPAS39-207ENST00000555854 SOX10P56693 466 aa11.49□□□□□ -0.57
VIPAS39-207ENST00000555854 INHBEP58166 350 aa11.49□□□□□ -0.57
VIPAS39-207ENST00000555854 CCL15Q16663 113 aa11.49□□□□□ -0.57
VIPAS39-207ENST00000555854 DZIP1Q86YF9 867 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms