RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 MYO5AQ9Y4I1 1855 aaKnown RBP22.53■■□□□ 1.2
SHMT2-206ENST00000553529 MAST3O60307 1309 aa22.53■■□□□ 1.2
SHMT2-206ENST00000553529 LAMB1P07942 1786 aa22.53■■□□□ 1.2
SHMT2-206ENST00000553529 TM4SF4P48230 202 aa22.52■■□□□ 1.2
SHMT2-206ENST00000553529 DGKZQ13574 1117 aa22.52■■□□□ 1.2
SHMT2-206ENST00000553529 VGLL4Q14135 290 aa22.52■■□□□ 1.2
SHMT2-206ENST00000553529 AKAP2Q9Y2D5 859 aa22.52■■□□□ 1.2
SHMT2-206ENST00000553529 IREB2P48200 963 aaKnown RBP22.51■■□□□ 1.19
SHMT2-206ENST00000553529 OS9Q13438 667 aaPredicted RBP22.51■■□□□ 1.19
SHMT2-206ENST00000553529 MVPQ14764 893 aaKnown RBP22.51■■□□□ 1.19
SHMT2-206ENST00000553529 TNNI3KQ59H18 835 aa22.51■■□□□ 1.19
SHMT2-206ENST00000553529 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.51■■□□□ 1.198e-7■■□□□ 11.7
SHMT2-206ENST00000553529 ZKSCAN4Q969J2 545 aaPredicted RBP22.51■■□□□ 1.19
SHMT2-206ENST00000553529 OPTNQ96CV9 577 aa22.51■■□□□ 1.19
SHMT2-206ENST00000553529 MRIQ9BWK5 157 aa22.51■■□□□ 1.19
SHMT2-206ENST00000553529 USP40Q9NVE5 1235 aa22.51■■□□□ 1.19
SHMT2-206ENST00000553529 EXOC6BQ9Y2D4 811 aa22.51■■□□□ 1.19
SHMT2-206ENST00000553529 FPGT-TNNI3KV9GXZ4 949 aa22.51■■□□□ 1.19
SHMT2-206ENST00000553529 SEMA3EO15041 775 aa22.5■■□□□ 1.19
SHMT2-206ENST00000553529 TNNI2P48788 182 aa22.5■■□□□ 1.19
SHMT2-206ENST00000553529 MECOMQ03112 1051 aa22.5■■□□□ 1.19
SHMT2-206ENST00000553529 ANKRD13AQ8IZ07 590 aa22.5■■□□□ 1.19
SHMT2-206ENST00000553529 PTPN18Q99952 460 aa22.5■■□□□ 1.19
SHMT2-206ENST00000553529 DDX4Q9NQI0 724 aaKnown RBP22.5■■□□□ 1.19
SHMT2-206ENST00000553529 RCAN3Q9UKA8 241 aa22.5■■□□□ 1.19
SHMT2-206ENST00000553529 NDUFB9Q9Y6M9 179 aa22.5■■□□□ 1.19
SHMT2-206ENST00000553529 ARID4AP29374 1257 aaPredicted RBP22.49■■□□□ 1.19
SHMT2-206ENST00000553529 SPATA5Q8NB90 893 aa22.49■■□□□ 1.19
SHMT2-206ENST00000553529 CCDC8Q9H0W5 538 aaPredicted RBP22.49■■□□□ 1.19
SHMT2-206ENST00000553529 TMOD2Q9NZR1 351 aa22.49■■□□□ 1.19
SHMT2-206ENST00000553529 SNCAIPQ9Y6H5 919 aa22.49■■□□□ 1.19
SHMT2-206ENST00000553529 GAKO14976 1311 aa22.49■■□□□ 1.19
SHMT2-206ENST00000553529 RFX7Q2KHR2 1363 aa22.49■■□□□ 1.19
SHMT2-206ENST00000553529 INPP5BP32019 993 aa22.48■■□□□ 1.19
SHMT2-206ENST00000553529 GORABQ5T7V8 394 aa22.48■■□□□ 1.19
SHMT2-206ENST00000553529 SH3BP5LQ7L8J4 393 aa22.48■■□□□ 1.19
SHMT2-206ENST00000553529 DZIP1Q86YF9 867 aaKnown RBP22.48■■□□□ 1.19
SHMT2-206ENST00000553529 IFNL1Q8IU54 200 aa22.48■■□□□ 1.19
SHMT2-206ENST00000553529 ZNF296Q8WUU4 475 aaPredicted RBP22.48■■□□□ 1.19
SHMT2-206ENST00000553529 EAF2Q96CJ1 260 aaPredicted RBP22.48■■□□□ 1.19
SHMT2-206ENST00000553529 DBNLQ9UJU6 430 aaKnown RBP22.48■■□□□ 1.19
SHMT2-206ENST00000553529 BTDP43251 543 aa22.47■■□□□ 1.19
SHMT2-206ENST00000553529 FAM83AQ86UY5 434 aa22.47■■□□□ 1.19
SHMT2-206ENST00000553529 SIRT2Q8IXJ6 389 aa22.47■■□□□ 1.19
SHMT2-206ENST00000553529 OTUD5Q96G74 571 aa22.47■■□□□ 1.19
SHMT2-206ENST00000553529 WRNIP1Q96S55 665 aa22.47■■□□□ 1.19
SHMT2-206ENST00000553529 BCL11AQ9H165 835 aa22.47■■□□□ 1.19
SHMT2-206ENST00000553529 AK9Q5TCS8 1911 aa22.47■■□□□ 1.19
SHMT2-206ENST00000553529 DOCK2Q92608 1830 aa22.46■■□□□ 1.19
SHMT2-206ENST00000553529 RGS3P49796 1198 aa22.46■■□□□ 1.19
SHMT2-206ENST00000553529 MAP3K9P80192 1104 aa22.46■■□□□ 1.19
SHMT2-206ENST00000553529 CAP1Q01518 475 aa22.46■■□□□ 1.19
SHMT2-206ENST00000553529 PICALMQ13492 652 aa22.46■■□□□ 1.19
SHMT2-206ENST00000553529 NOP58Q9Y2X3 529 aaKnown RBP22.46■■□□□ 1.19
SHMT2-206ENST00000553529 CCDC85CA6NKD9 419 aa22.45■■□□□ 1.18
SHMT2-206ENST00000553529 APBB1O00213 710 aa22.45■■□□□ 1.18
SHMT2-206ENST00000553529 WDHD1O75717 1129 aaPredicted RBP22.45■■□□□ 1.18
SHMT2-206ENST00000553529 ZBTB48P10074 688 aaPredicted RBP22.45■■□□□ 1.18
SHMT2-206ENST00000553529 SREBF2Q12772 1141 aa22.45■■□□□ 1.18
SHMT2-206ENST00000553529 FAM151AQ8WW52 585 aa22.45■■□□□ 1.18
SHMT2-206ENST00000553529 MS4A4AQ96JQ5 239 aa22.45■■□□□ 1.18
SHMT2-206ENST00000553529 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.45■■□□□ 1.18
SHMT2-206ENST00000553529 MROH7-TTC4A0A0A0MT08 1334 aa22.45■■□□□ 1.18
SHMT2-206ENST00000553529 PDS5AQ29RF7 1337 aaKnown RBP22.45■■□□□ 1.18
SHMT2-206ENST00000553529 RPAP1Q9BWH6 1393 aaPredicted RBP22.45■■□□□ 1.18
SHMT2-206ENST00000553529 DDTLA6NHG4 134 aaPredicted RBP22.44■■□□□ 1.18
SHMT2-206ENST00000553529 GPR25O00155 361 aa22.44■■□□□ 1.18
SHMT2-206ENST00000553529 TTC39AQ5SRH9 613 aa22.44■■□□□ 1.18
SHMT2-206ENST00000553529 ATRNL1Q5VV63 1379 aa22.44■■□□□ 1.18
SHMT2-206ENST00000553529 FKBP1CQ5VVH2 108 aa22.44■■□□□ 1.18
SHMT2-206ENST00000553529 ERICH6Q7L0X2 663 aa22.44■■□□□ 1.18
SHMT2-206ENST00000553529 ADGRA1Q86SQ6 560 aa22.44■■□□□ 1.18
SHMT2-206ENST00000553529 BRI3BPQ8WY22 251 aa22.44■■□□□ 1.18
SHMT2-206ENST00000553529 NSUN4Q96CB9 384 aaKnown RBP22.44■■□□□ 1.18
SHMT2-206ENST00000553529 IL1RAPL2Q9NP60 686 aa22.44■■□□□ 1.18
SHMT2-206ENST00000553529 PIH1D3Q9NQM4 214 aaKnown RBP22.44■■□□□ 1.18
SHMT2-206ENST00000553529 RAI14Q9P0K7 980 aa22.44■■□□□ 1.18
SHMT2-206ENST00000553529 MAST2Q6P0Q8 1798 aa22.43■■□□□ 1.18
SHMT2-206ENST00000553529 MANSC4A6NHS7 340 aaPredicted RBP22.43■■□□□ 1.18
SHMT2-206ENST00000553529 FAM196BA6NMK8 535 aa22.43■■□□□ 1.18
SHMT2-206ENST00000553529 ZAP70P43403 619 aa22.43■■□□□ 1.18
SHMT2-206ENST00000553529 RHBDL3P58872 404 aa22.43■■□□□ 1.18
SHMT2-206ENST00000553529 ZSWIM8A7E2V4 1837 aa22.43■■□□□ 1.18
SHMT2-206ENST00000553529 ZBTB22O15209 634 aa22.42■■□□□ 1.18
SHMT2-206ENST00000553529 CYP2E1P05181 493 aaPredicted RBP22.42■■□□□ 1.18
SHMT2-206ENST00000553529 REM2Q8IYK8 340 aaPredicted RBP22.42■■□□□ 1.18
SHMT2-206ENST00000553529 ZGPATQ8N5A5 531 aaKnown RBP22.42■■□□□ 1.18
SHMT2-206ENST00000553529 CRHR2Q13324 411 aa22.41■■□□□ 1.18
SHMT2-206ENST00000553529 CCDC84Q86UT8 332 aaPredicted RBP22.41■■□□□ 1.18
SHMT2-206ENST00000553529 FAM43AQ8N2R8 423 aa22.41■■□□□ 1.18
SHMT2-206ENST00000553529 GPR108Q9NPR9 543 aa22.41■■□□□ 1.18
SHMT2-206ENST00000553529 ZBTB40Q9NUA8 1239 aa22.41■■□□□ 1.18
SHMT2-206ENST00000553529 CSADQ9Y600 493 aa22.41■■□□□ 1.18
SHMT2-206ENST00000553529 GPR75-ASB3A0A0A6YYF3 556 aa22.4■■□□□ 1.18
SHMT2-206ENST00000553529 SPDYE5A6NIY4 337 aa22.4■■□□□ 1.18
SHMT2-206ENST00000553529 ANTXR1Q9H6X2 564 aa22.4■■□□□ 1.18
SHMT2-206ENST00000553529 CDK5RAP2Q96SN8 1893 aa22.39■■□□□ 1.18
SHMT2-206ENST00000553529 SIPA1L1O43166 1804 aa22.39■■□□□ 1.17
SHMT2-206ENST00000553529 CCL15-CCL14A0A0B4J2E2 113 aa22.39■■□□□ 1.17
SHMT2-206ENST00000553529 IRF6O14896 467 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 166.9 ms