RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 NBPF11Q86T75 865 aa17■□□□□ 0.31
SS18-204ENST00000539244 ZKSCAN4Q969J2 545 aaPredicted RBP17■□□□□ 0.31
SS18-204ENST00000539244 PTCH2Q9Y6C5 1203 aa17■□□□□ 0.31
SS18-204ENST00000539244 GNRH1P01148 92 aa16.99■□□□□ 0.31
SS18-204ENST00000539244 PPATQ06203 517 aa16.99■□□□□ 0.31
SS18-204ENST00000539244 ALDH1L2Q3SY69 923 aa16.99■□□□□ 0.31
SS18-204ENST00000539244 SLC9C1Q4G0N8 1177 aa16.99■□□□□ 0.31
SS18-204ENST00000539244 ATG9AQ7Z3C6 839 aa16.99■□□□□ 0.31
SS18-204ENST00000539244 TMEM106CQ9BVX2 250 aa16.99■□□□□ 0.31
SS18-204ENST00000539244 ZNF341Q9BYN7 854 aa16.99■□□□□ 0.31
SS18-204ENST00000539244 FBXO3Q9UK99 471 aa16.99■□□□□ 0.31
SS18-204ENST00000539244 ZBTB22O15209 634 aa16.98■□□□□ 0.31
SS18-204ENST00000539244 LACTBP83111 547 aaPredicted RBP16.98■□□□□ 0.31
SS18-204ENST00000539244 FAM151AQ8WW52 585 aa16.98■□□□□ 0.31
SS18-204ENST00000539244 ZNF112Q9UJU3 913 aa16.98■□□□□ 0.31
SS18-204ENST00000539244 PRMT2P55345 433 aa16.97■□□□□ 0.31
SS18-204ENST00000539244 SLFN5Q08AF3 891 aa16.97■□□□□ 0.31
SS18-204ENST00000539244 ARHGAP39Q9C0H5 1083 aa16.97■□□□□ 0.31
SS18-204ENST00000539244 KCNH4Q9UQ05 1017 aa16.97■□□□□ 0.31
SS18-204ENST00000539244 DAGLAQ9Y4D2 1042 aa16.97■□□□□ 0.31
SS18-204ENST00000539244 ZSWIM8A7E2V4 1837 aa16.97■□□□□ 0.31
SS18-204ENST00000539244 CIAO1O76071 339 aa16.96■□□□□ 0.31
SS18-204ENST00000539244 INPP5BP32019 993 aa16.96■□□□□ 0.31
SS18-204ENST00000539244 KIF22Q14807 665 aa16.96■□□□□ 0.31
SS18-204ENST00000539244 HABP4Q5JVS0 413 aaKnown RBP16.96■□□□□ 0.31
SS18-204ENST00000539244 CDC42EP5Q6NZY7 148 aa16.96■□□□□ 0.31
SS18-204ENST00000539244 C17orf99Q6UX52 265 aa16.96■□□□□ 0.31
SS18-204ENST00000539244 MIGA2Q7L4E1 593 aa16.96■□□□□ 0.31
SS18-204ENST00000539244 SALL1Q9NSC2 1324 aa16.96■□□□□ 0.3
SS18-204ENST00000539244 PRDX5P30044 214 aa16.95■□□□□ 0.3
SS18-204ENST00000539244 NOL9Q5SY16 702 aaKnown RBP16.95■□□□□ 0.3
SS18-204ENST00000539244 ANKRD23Q86SG2 305 aa16.95■□□□□ 0.3
SS18-204ENST00000539244 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.95■□□□□ 0.3
SS18-204ENST00000539244 ADGRA2Q96PE1 1338 aa16.95■□□□□ 0.3
SS18-204ENST00000539244 AK9Q5TCS8 1911 aa16.94■□□□□ 0.3
SS18-204ENST00000539244 SEMA3EO15041 775 aa16.94■□□□□ 0.3
SS18-204ENST00000539244 NFIAQ12857 509 aa16.94■□□□□ 0.3
SS18-204ENST00000539244 DIXDC1Q155Q3 683 aa16.94■□□□□ 0.3
SS18-204ENST00000539244 ATP2B3Q16720 1220 aa16.94■□□□□ 0.3
SS18-204ENST00000539244 FAM198AQ9UFP1 575 aa16.94■□□□□ 0.3
SS18-204ENST00000539244 LDHBP07195 334 aaKnown RBP16.93■□□□□ 0.3
SS18-204ENST00000539244 UBTFL1P0CB47 393 aaPredicted RBP16.93■□□□□ 0.3
SS18-204ENST00000539244 MOGSQ13724 837 aa16.93■□□□□ 0.3
SS18-204ENST00000539244 SLC4A8Q2Y0W8 1093 aa16.93■□□□□ 0.3
SS18-204ENST00000539244 TRMT2AQ8IZ69 625 aaKnown RBP16.93■□□□□ 0.3
SS18-204ENST00000539244 SMC4Q9NTJ3 1288 aa16.93■□□□□ 0.3
SS18-204ENST00000539244 GNL3LQ9NVN8 582 aaKnown RBP16.93■□□□□ 0.3
SS18-204ENST00000539244 CEP126Q9P2H0 1117 aa16.93■□□□□ 0.3
SS18-204ENST00000539244 DENND2AQ9ULE3 1009 aa16.93■□□□□ 0.3
SS18-204ENST00000539244 ATRNL1Q5VV63 1379 aa16.92■□□□□ 0.3
SS18-204ENST00000539244 PDHXO00330 501 aa16.92■□□□□ 0.3
SS18-204ENST00000539244 CT47B1P0C2W7 299 aaPredicted RBP16.92■□□□□ 0.3
SS18-204ENST00000539244 TCP10Q12799 353 aa16.92■□□□□ 0.3
SS18-204ENST00000539244 SH3TC2Q8TF17 1288 aa16.92■□□□□ 0.3
SS18-204ENST00000539244 CTGFP29279 349 aa16.91■□□□□ 0.3
SS18-204ENST00000539244 IL15P40933 162 aaPredicted RBP16.91■□□□□ 0.3
SS18-204ENST00000539244 IDI2Q9BXS1 227 aa16.91■□□□□ 0.3
SS18-204ENST00000539244 SIL1Q9H173 461 aa16.91■□□□□ 0.3
SS18-204ENST00000539244 USP40Q9NVE5 1235 aa16.91■□□□□ 0.3
SS18-204ENST00000539244 SRRDQ9UH36 339 aa16.91■□□□□ 0.3
SS18-204ENST00000539244 CPA4Q9UI42 421 aa16.91■□□□□ 0.3
SS18-204ENST00000539244 MYH2Q9UKX2 1941 aa16.91■□□□□ 0.3
SS18-204ENST00000539244 GAKO14976 1311 aa16.91■□□□□ 0.3
SS18-204ENST00000539244 DOCK2Q92608 1830 aa16.91■□□□□ 0.3
SS18-204ENST00000539244 RFX7Q2KHR2 1363 aa16.9■□□□□ 0.3
SS18-204ENST00000539244 CXCL11O14625 94 aa16.9■□□□□ 0.3
SS18-204ENST00000539244 PHKA1P46020 1223 aa16.9■□□□□ 0.3
SS18-204ENST00000539244 ZGPATQ8N5A5 531 aaKnown RBP16.9■□□□□ 0.3
SS18-204ENST00000539244 CDCA7LQ96GN5 454 aa16.9■□□□□ 0.3
SS18-204ENST00000539244 TRIM47Q96LD4 638 aa16.9■□□□□ 0.3
SS18-204ENST00000539244 COPRSQ9NQ92 184 aa16.9■□□□□ 0.3
SS18-204ENST00000539244 HDAC5Q9UQL6 1122 aa16.9■□□□□ 0.3
SS18-204ENST00000539244 PDS5AQ29RF7 1337 aaKnown RBP16.9■□□□□ 0.3
SS18-204ENST00000539244 PHF20L1A8MW92 1017 aa16.89■□□□□ 0.29
SS18-204ENST00000539244 ENTPD3O75355 529 aa16.89■□□□□ 0.29
SS18-204ENST00000539244 OSBPP22059 807 aa16.89■□□□□ 0.29
SS18-204ENST00000539244 HOXD10P28358 340 aa16.89■□□□□ 0.29
SS18-204ENST00000539244 PSMC4P43686 418 aa16.89■□□□□ 0.29
SS18-204ENST00000539244 MAP3K10Q02779 954 aa16.89■□□□□ 0.29
SS18-204ENST00000539244 ZFPM1Q8IX07 1006 aa16.89■□□□□ 0.29
SS18-204ENST00000539244 PARK7Q99497 189 aaKnown RBP16.89■□□□□ 0.29
SS18-204ENST00000539244 LRRFIP2Q9Y608 721 aaKnown RBP16.89■□□□□ 0.29
SS18-204ENST00000539244 BCRP11274 1271 aa16.88■□□□□ 0.29
SS18-204ENST00000539244 CCDC102BQ68D86 513 aa16.88■□□□□ 0.29
SS18-204ENST00000539244 GPAT2Q6NUI2 795 aa16.88■□□□□ 0.29
SS18-204ENST00000539244 SCYL3Q8IZE3 742 aa16.88■□□□□ 0.29
SS18-204ENST00000539244 FAM163AQ96GL9 167 aaPredicted RBP16.88■□□□□ 0.29
SS18-204ENST00000539244 API5Q9BZZ5 524 aaKnown RBP16.88■□□□□ 0.29
SS18-204ENST00000539244 PA2G4Q9UQ80 394 aaKnown RBP16.88■□□□□ 0.29
SS18-204ENST00000539244 PTPRFP10586 1907 aa16.88■□□□□ 0.29
SS18-204ENST00000539244 MGAMO43451 1857 aa16.87■□□□□ 0.29
SS18-204ENST00000539244 A0A0G2JLL6 359 aaPredicted RBP16.87■□□□□ 0.29
SS18-204ENST00000539244 MYCP01106 439 aaPredicted RBP16.87■□□□□ 0.29
SS18-204ENST00000539244 ADORA1P30542 326 aa16.87■□□□□ 0.29
SS18-204ENST00000539244 RGS3P49796 1198 aa16.87■□□□□ 0.29
SS18-204ENST00000539244 FXR1P51114 621 aaKnown RBP eCLIP16.87■□□□□ 0.29
SS18-204ENST00000539244 MTFR1Q15390 333 aa16.87■□□□□ 0.29
SS18-204ENST00000539244 PRRT2Q7Z6L0 340 aaPredicted RBP16.87■□□□□ 0.29
SS18-204ENST00000539244 SHISA4Q96DD7 197 aa16.87■□□□□ 0.29
SS18-204ENST00000539244 NOB1Q9ULX3 412 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms