RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 ARHGEF6Q15052 776 aa19.69■□□□□ 0.74
CHMP4A-207ENST00000533523 PUM3Q15397 648 aaKnown RBP19.69■□□□□ 0.74
CHMP4A-207ENST00000533523 ZDHHC15Q96MV8 337 aa19.69■□□□□ 0.74
CHMP4A-207ENST00000533523 TMEM106CQ9BVX2 250 aa19.69■□□□□ 0.74
CHMP4A-207ENST00000533523 PRO3102Q9H379 93 aa19.69■□□□□ 0.74
CHMP4A-207ENST00000533523 RPAP1Q9BWH6 1393 aaPredicted RBP19.69■□□□□ 0.74
CHMP4A-207ENST00000533523 MYH2Q9UKX2 1941 aa19.68■□□□□ 0.74
CHMP4A-207ENST00000533523 SPTBN5Q9NRC6 3674 aaKnown RBP19.68■□□□□ 0.74
CHMP4A-207ENST00000533523 IFIT1P09914 478 aaKnown RBP19.68■□□□□ 0.74
CHMP4A-207ENST00000533523 CETPP11597 493 aa19.68■□□□□ 0.74
CHMP4A-207ENST00000533523 MRPL50Q8N5N7 158 aaKnown RBP19.68■□□□□ 0.74
CHMP4A-207ENST00000533523 ZKSCAN4Q969J2 545 aaPredicted RBP19.68■□□□□ 0.74
CHMP4A-207ENST00000533523 RBM27Q9P2N5 1060 aaKnown RBP19.68■□□□□ 0.74
CHMP4A-207ENST00000533523 PTPRCP08575 1304 aa19.68■□□□□ 0.74
CHMP4A-207ENST00000533523 CTGFP29279 349 aa19.67■□□□□ 0.74
CHMP4A-207ENST00000533523 CHRDL2Q6WN34 429 aa19.67■□□□□ 0.74
CHMP4A-207ENST00000533523 ERO1BQ86YB8 467 aa19.67■□□□□ 0.74
CHMP4A-207ENST00000533523 SH3TC2Q8TF17 1288 aa19.67■□□□□ 0.74
CHMP4A-207ENST00000533523 HOOK2Q96ED9 719 aa19.67■□□□□ 0.74
CHMP4A-207ENST00000533523 KIF16BQ96L93 1317 aa19.67■□□□□ 0.74
CHMP4A-207ENST00000533523 SNAPC2Q13487 334 aa19.66■□□□□ 0.74
CHMP4A-207ENST00000533523 DCAF15Q66K64 600 aa19.66■□□□□ 0.74
CHMP4A-207ENST00000533523 NBPF11Q86T75 865 aa19.66■□□□□ 0.74
CHMP4A-207ENST00000533523 FAM83AQ86UY5 434 aa19.66■□□□□ 0.74
CHMP4A-207ENST00000533523 MGAMO43451 1857 aa19.66■□□□□ 0.74
CHMP4A-207ENST00000533523 BTBD19C9JJ37 291 aa19.65■□□□□ 0.74
CHMP4A-207ENST00000533523 IRF6O14896 467 aa19.65■□□□□ 0.74
CHMP4A-207ENST00000533523 SLC5A1P13866 664 aa19.65■□□□□ 0.74
CHMP4A-207ENST00000533523 PPIL2Q13356 520 aa19.65■□□□□ 0.74
CHMP4A-207ENST00000533523 KIF22Q14807 665 aa19.65■□□□□ 0.74
CHMP4A-207ENST00000533523 SLC4A8Q2Y0W8 1093 aa19.65■□□□□ 0.74
CHMP4A-207ENST00000533523 APOBEC3HQ6NTF7 200 aaKnown RBP19.65■□□□□ 0.74
CHMP4A-207ENST00000533523 SUGT1Q9Y2Z0 365 aa19.65■□□□□ 0.74
CHMP4A-207ENST00000533523 ECM2O94769 699 aaPredicted RBP19.64■□□□□ 0.73
CHMP4A-207ENST00000533523 CT47B1P0C2W7 299 aaPredicted RBP19.64■□□□□ 0.73
CHMP4A-207ENST00000533523 FGFR2P21802 821 aa19.64■□□□□ 0.73
CHMP4A-207ENST00000533523 FKBP1CQ5VVH2 108 aa19.64■□□□□ 0.73
CHMP4A-207ENST00000533523 UBE2Q1Q7Z7E8 422 aa19.64■□□□□ 0.73
CHMP4A-207ENST00000533523 ZNF341Q9BYN7 854 aa19.64■□□□□ 0.73
CHMP4A-207ENST00000533523 PTPRFP10586 1907 aa19.63■□□□□ 0.73
CHMP4A-207ENST00000533523 TLR2O60603 784 aa19.63■□□□□ 0.73
CHMP4A-207ENST00000533523 LACTBP83111 547 aaPredicted RBP19.63■□□□□ 0.73
CHMP4A-207ENST00000533523 MTFR1Q15390 333 aa19.63■□□□□ 0.73
CHMP4A-207ENST00000533523 HHIPL2Q6UWX4 724 aa19.63■□□□□ 0.73
CHMP4A-207ENST00000533523 MIGA2Q7L4E1 593 aa19.63■□□□□ 0.73
CHMP4A-207ENST00000533523 SSH1Q8WYL5 1049 aa19.63■□□□□ 0.73
CHMP4A-207ENST00000533523 CDCA7LQ96GN5 454 aa19.63■□□□□ 0.73
CHMP4A-207ENST00000533523 USP44Q9H0E7 712 aa19.63■□□□□ 0.73
CHMP4A-207ENST00000533523 ZCCHC17Q9NP64 241 aaKnown RBP19.63■□□□□ 0.73
CHMP4A-207ENST00000533523 EYA2O00167 538 aa19.62■□□□□ 0.73
CHMP4A-207ENST00000533523 INPP5BP32019 993 aa19.62■□□□□ 0.73
CHMP4A-207ENST00000533523 TRMT2AQ8IZ69 625 aaKnown RBP19.62■□□□□ 0.73
CHMP4A-207ENST00000533523 WDR66Q8TBY9 1149 aa19.62■□□□□ 0.73
CHMP4A-207ENST00000533523 LPIN2Q92539 896 aa19.62■□□□□ 0.73
CHMP4A-207ENST00000533523 MRIQ9BWK5 157 aa19.62■□□□□ 0.73
CHMP4A-207ENST00000533523 DOCK1Q14185 1865 aa19.61■□□□□ 0.73
CHMP4A-207ENST00000533523 SOX1O00570 391 aaPredicted RBP19.61■□□□□ 0.73
CHMP4A-207ENST00000533523 TCP10Q12799 353 aa19.61■□□□□ 0.73
CHMP4A-207ENST00000533523 DIXDC1Q155Q3 683 aa19.61■□□□□ 0.73
CHMP4A-207ENST00000533523 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.61■□□□□ 0.73
CHMP4A-207ENST00000533523 SIL1Q9H173 461 aa19.61■□□□□ 0.73
CHMP4A-207ENST00000533523 DAGLAQ9Y4D2 1042 aa19.61■□□□□ 0.73
CHMP4A-207ENST00000533523 RFX5P48382 616 aaPredicted RBP19.6■□□□□ 0.73
CHMP4A-207ENST00000533523 ALDH1L2Q3SY69 923 aa19.6■□□□□ 0.73
CHMP4A-207ENST00000533523 PRDX5P30044 214 aa19.59■□□□□ 0.73
CHMP4A-207ENST00000533523 PPATQ06203 517 aa19.59■□□□□ 0.73
CHMP4A-207ENST00000533523 ATP2B3Q16720 1220 aa19.59■□□□□ 0.73
CHMP4A-207ENST00000533523 FAM151AQ8WW52 585 aa19.59■□□□□ 0.73
CHMP4A-207ENST00000533523 SMC4Q9NTJ3 1288 aa19.59■□□□□ 0.73
CHMP4A-207ENST00000533523 CPA4Q9UI42 421 aa19.59■□□□□ 0.73
CHMP4A-207ENST00000533523 DLL1O00548 723 aa19.58■□□□□ 0.72
CHMP4A-207ENST00000533523 LDHBP07195 334 aaKnown RBP19.58■□□□□ 0.72
CHMP4A-207ENST00000533523 CENPBP07199 599 aaPredicted RBP19.58■□□□□ 0.72
CHMP4A-207ENST00000533523 NFIAQ12857 509 aa19.58■□□□□ 0.72
CHMP4A-207ENST00000533523 CDC42EP5Q6NZY7 148 aa19.58■□□□□ 0.72
CHMP4A-207ENST00000533523 PDHXO00330 501 aa19.57■□□□□ 0.72
CHMP4A-207ENST00000533523 GNRH1P01148 92 aa19.57■□□□□ 0.72
CHMP4A-207ENST00000533523 UBTFL1P0CB47 393 aaPredicted RBP19.57■□□□□ 0.72
CHMP4A-207ENST00000533523 ATG9AQ7Z3C6 839 aa19.57■□□□□ 0.72
CHMP4A-207ENST00000533523 ANKRD23Q86SG2 305 aa19.57■□□□□ 0.72
CHMP4A-207ENST00000533523 GNL3LQ9NVN8 582 aaKnown RBP19.57■□□□□ 0.72
CHMP4A-207ENST00000533523 PHIPQ8WWQ0 1821 aa19.57■□□□□ 0.72
CHMP4A-207ENST00000533523 PRUNE2Q8WUY3 3088 aa19.57■□□□□ 0.72
CHMP4A-207ENST00000533523 ADGRA2Q96PE1 1338 aa19.56■□□□□ 0.72
CHMP4A-207ENST00000533523 KCNH4Q9UQ05 1017 aa19.56■□□□□ 0.72
CHMP4A-207ENST00000533523 PSMC4P43686 418 aa19.55■□□□□ 0.72
CHMP4A-207ENST00000533523 PRMT2P55345 433 aa19.55■□□□□ 0.72
CHMP4A-207ENST00000533523 C17orf99Q6UX52 265 aa19.55■□□□□ 0.72
CHMP4A-207ENST00000533523 DNAH12Q6ZR08 3092 aa19.55■□□□□ 0.72
CHMP4A-207ENST00000533523 DOCK3Q8IZD9 2030 aa19.55■□□□□ 0.72
CHMP4A-207ENST00000533523 TRIM47Q96LD4 638 aa19.55■□□□□ 0.72
CHMP4A-207ENST00000533523 USP40Q9NVE5 1235 aa19.55■□□□□ 0.72
CHMP4A-207ENST00000533523 CEP126Q9P2H0 1117 aa19.55■□□□□ 0.72
CHMP4A-207ENST00000533523 FAM198AQ9UFP1 575 aa19.55■□□□□ 0.72
CHMP4A-207ENST00000533523 ZNF112Q9UJU3 913 aa19.55■□□□□ 0.72
CHMP4A-207ENST00000533523 ATAD5Q96QE3 1844 aa19.55■□□□□ 0.72
CHMP4A-207ENST00000533523 CIAO1O76071 339 aa19.54■□□□□ 0.72
CHMP4A-207ENST00000533523 FMNL1O95466 1100 aaPredicted RBP19.54■□□□□ 0.72
CHMP4A-207ENST00000533523 PHKA1P46020 1223 aa19.54■□□□□ 0.72
CHMP4A-207ENST00000533523 NOL9Q5SY16 702 aaKnown RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms