RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 RFX7Q2KHR2 1363 aa18.36■□□□□ 0.53
CPSF1-208ENST00000532560 CDC42EP5Q6NZY7 148 aa18.36■□□□□ 0.53
CPSF1-208ENST00000532560 PAXIP1Q6ZW49 1069 aaPredicted RBP18.36■□□□□ 0.53
CPSF1-208ENST00000532560 DOCK2Q92608 1830 aa18.36■□□□□ 0.53
CPSF1-208ENST00000532560 CAPNS2Q96L46 248 aa18.36■□□□□ 0.53
CPSF1-208ENST00000532560 WDR33Q9C0J8 1336 aaKnown RBP18.36■□□□□ 0.53
CPSF1-208ENST00000532560 SMARCA5O60264 1052 aaPredicted RBP18.35■□□□□ 0.53
CPSF1-208ENST00000532560 LDHCP07864 332 aa18.35■□□□□ 0.53
CPSF1-208ENST00000532560 SUPT20HL1Q3ZLR7 823 aa18.35■□□□□ 0.53
CPSF1-208ENST00000532560 CYP4F22Q6NT55 531 aa18.35■□□□□ 0.53
CPSF1-208ENST00000532560 EXOC6Q8TAG9 804 aa18.35■□□□□ 0.53
CPSF1-208ENST00000532560 TEPSINQ96N21 525 aa18.35■□□□□ 0.53
CPSF1-208ENST00000532560 TMEM39BQ9GZU3 492 aa18.35■□□□□ 0.53
CPSF1-208ENST00000532560 PIH1D3Q9NQM4 214 aaKnown RBP18.35■□□□□ 0.53
CPSF1-208ENST00000532560 GPR75-ASB3A0A0A6YYF3 556 aa18.34■□□□□ 0.53
CPSF1-208ENST00000532560 BTDP43251 543 aa18.34■□□□□ 0.53
CPSF1-208ENST00000532560 RGMBQ6NW40 437 aa18.34■□□□□ 0.53
CPSF1-208ENST00000532560 USP40Q9NVE5 1235 aa18.34■□□□□ 0.53
CPSF1-208ENST00000532560 MYO5AQ9Y4I1 1855 aaKnown RBP18.34■□□□□ 0.53
CPSF1-208ENST00000532560 ATP5JP18859 108 aa18.33■□□□□ 0.52
CPSF1-208ENST00000532560 TTLL12Q14166 644 aaPredicted RBP18.33■□□□□ 0.52
CPSF1-208ENST00000532560 MAP3K11Q16584 847 aa18.33■□□□□ 0.52
CPSF1-208ENST00000532560 NBPF12Q5TAG4 269 aaPredicted RBP18.33■□□□□ 0.52
CPSF1-208ENST00000532560 NAA16Q6N069 864 aaPredicted RBP18.33■□□□□ 0.52
CPSF1-208ENST00000532560 TMED8Q6PL24 325 aaPredicted RBP18.33■□□□□ 0.52
CPSF1-208ENST00000532560 MOB2Q70IA6 237 aa18.33■□□□□ 0.52
CPSF1-208ENST00000532560 ARMC9Q7Z3E5 817 aa18.33■□□□□ 0.52
CPSF1-208ENST00000532560 BCL11AQ9H165 835 aa18.33■□□□□ 0.52
CPSF1-208ENST00000532560 NDUFB9Q9Y6M9 179 aa18.33■□□□□ 0.52
CPSF1-208ENST00000532560 PPP1R12BO60237 982 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-208ENST00000532560 MAP4K4O95819 1239 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-208ENST00000532560 NFIAQ12857 509 aa18.32■□□□□ 0.52
CPSF1-208ENST00000532560 TTF1Q15361 905 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-208ENST00000532560 CDAN1Q8IWY9 1227 aa18.32■□□□□ 0.52
CPSF1-208ENST00000532560 GCC1Q96CN9 775 aa18.32■□□□□ 0.52
CPSF1-208ENST00000532560 IDI2Q9BXS1 227 aa18.32■□□□□ 0.52
CPSF1-208ENST00000532560 UBE2Q2LH0YL09 131 aa18.31■□□□□ 0.52
CPSF1-208ENST00000532560 IDH1O75874 414 aaKnown RBP18.31■□□□□ 0.52
CPSF1-208ENST00000532560 LDLRAD1Q5T700 205 aa18.31■□□□□ 0.52
CPSF1-208ENST00000532560 FAM151AQ8WW52 585 aa18.31■□□□□ 0.52
CPSF1-208ENST00000532560 CCDC102AQ96A19 550 aa18.31■□□□□ 0.52
CPSF1-208ENST00000532560 ANTXR1Q9H6X2 564 aa18.31■□□□□ 0.52
CPSF1-208ENST00000532560 FAM198AQ9UFP1 575 aa18.31■□□□□ 0.52
CPSF1-208ENST00000532560 ANGEL1Q9UNK9 670 aaKnown RBP18.31■□□□□ 0.52
CPSF1-208ENST00000532560 UNCXA6NJT0 531 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 FAM155AB1AL88 458 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-208ENST00000532560 WDHD1O75717 1129 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-208ENST00000532560 SLC10A3P09131 477 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 MAP2K2P36507 400 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 ZNF157P51786 506 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-208ENST00000532560 RHBDL3P58872 404 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 NOGQ13253 232 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 GRM1Q13255 1194 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 PRKG1Q13976 671 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 HOOK2Q96ED9 719 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 GPATCH3Q96I76 525 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 DNAJC2Q99543 621 aaKnown RBP18.3■□□□□ 0.52
CPSF1-208ENST00000532560 HAUS7Q99871 368 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 NOL10Q9BSC4 688 aaKnown RBP18.3■□□□□ 0.52
CPSF1-208ENST00000532560 ECHDC1Q9NTX5 307 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 OTOFQ9HC10 1997 aa18.3■□□□□ 0.52
CPSF1-208ENST00000532560 AOC2O75106 756 aa18.29■□□□□ 0.52
CPSF1-208ENST00000532560 ENTPD3O75355 529 aa18.29■□□□□ 0.52
CPSF1-208ENST00000532560 NPM3O75607 178 aaKnown RBP18.29■□□□□ 0.52
CPSF1-208ENST00000532560 IREB2P48200 963 aaKnown RBP18.29■□□□□ 0.52
CPSF1-208ENST00000532560 RGS3P49796 1198 aa18.29■□□□□ 0.52
CPSF1-208ENST00000532560 MAP3K12Q12852 859 aa18.29■□□□□ 0.52
CPSF1-208ENST00000532560 ADGRA1Q86SQ6 560 aa18.29■□□□□ 0.52
CPSF1-208ENST00000532560 RASAL3Q86YV0 1011 aa18.29■□□□□ 0.52
CPSF1-208ENST00000532560 BOLA2Q9H3K6 86 aa18.29■□□□□ 0.52
CPSF1-208ENST00000532560 FZD1Q9UP38 647 aa18.29■□□□□ 0.52
CPSF1-208ENST00000532560 COL2A1P02458 1487 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-208ENST00000532560 GOLIM4O00461 696 aa18.28■□□□□ 0.52
CPSF1-208ENST00000532560 USP2O75604 605 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-208ENST00000532560 BAG3O95817 575 aa18.28■□□□□ 0.52
CPSF1-208ENST00000532560 PLCG2P16885 1265 aa18.28■□□□□ 0.52
CPSF1-208ENST00000532560 PPP4CP60510 307 aa18.28■□□□□ 0.52
CPSF1-208ENST00000532560 TCP10Q12799 353 aa18.28■□□□□ 0.52
CPSF1-208ENST00000532560 RWDD1Q9H446 243 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-208ENST00000532560 PAG1Q9NWQ8 432 aa18.28■□□□□ 0.52
CPSF1-208ENST00000532560 CYP7A1P22680 504 aa18.27■□□□□ 0.52
CPSF1-208ENST00000532560 CERS3Q8IU89 383 aa18.27■□□□□ 0.52
CPSF1-208ENST00000532560 SMC5Q8IY18 1101 aa18.27■□□□□ 0.52
CPSF1-208ENST00000532560 MAGEB6Q8N7X4 407 aa18.27■□□□□ 0.52
CPSF1-208ENST00000532560 DDX4Q9NQI0 724 aaKnown RBP18.27■□□□□ 0.52
CPSF1-208ENST00000532560 AATFQ9NY61 560 aaKnown RBP eCLIP18.27■□□□□ 0.52
CPSF1-208ENST00000532560 TTC41PQ6P2S7 1318 aa18.26■□□□□ 0.51
CPSF1-208ENST00000532560 HSPA1AP0DMV8 641 aaKnown RBP18.26■□□□□ 0.51
CPSF1-208ENST00000532560 HSPA1BP0DMV9 641 aaKnown RBP18.26■□□□□ 0.51
CPSF1-208ENST00000532560 IRX6P78412 446 aaPredicted RBP18.26■□□□□ 0.51
CPSF1-208ENST00000532560 MAP2K1Q02750 393 aaPredicted RBP18.26■□□□□ 0.51
CPSF1-208ENST00000532560 DCAF15Q66K64 600 aa18.26■□□□□ 0.51
CPSF1-208ENST00000532560 ZFPM1Q8IX07 1006 aa18.26■□□□□ 0.51
CPSF1-208ENST00000532560 ZBTB47Q9UFB7 747 aaPredicted RBP18.26■□□□□ 0.51
CPSF1-208ENST00000532560 ATRNL1Q5VV63 1379 aa18.26■□□□□ 0.51
CPSF1-208ENST00000532560 FOCADQ5VW36 1801 aa18.26■□□□□ 0.51
CPSF1-208ENST00000532560 CDK5RAP2Q96SN8 1893 aa18.25■□□□□ 0.51
CPSF1-208ENST00000532560 PDE6AP16499 860 aa18.25■□□□□ 0.51
CPSF1-208ENST00000532560 PICALMQ13492 652 aa18.25■□□□□ 0.51
CPSF1-208ENST00000532560 ANKRD45Q5TZF3 282 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms