RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 NEUROD6Q96NK8 337 aa12.92□□□□□ -0.34
PRPF40B-204ENST00000527253 PTPN18Q99952 460 aa12.92□□□□□ -0.34
PRPF40B-204ENST00000527253 AKAP2Q9Y2D5 859 aa12.92□□□□□ -0.34
PRPF40B-204ENST00000527253 MANSC4A6NHS7 340 aaPredicted RBP12.91□□□□□ -0.34
PRPF40B-204ENST00000527253 VGLL4Q14135 290 aa12.91□□□□□ -0.34
PRPF40B-204ENST00000527253 IFNL1Q8IU54 200 aa12.91□□□□□ -0.34
PRPF40B-204ENST00000527253 FTSJ3Q8IY81 847 aaKnown RBP12.91□□□□□ -0.34
PRPF40B-204ENST00000527253 CFHR5Q9BXR6 569 aa12.91□□□□□ -0.34
PRPF40B-204ENST00000527253 USP40Q9NVE5 1235 aa12.91□□□□□ -0.34
PRPF40B-204ENST00000527253 TMOD2Q9NZR1 351 aa12.91□□□□□ -0.34
PRPF40B-204ENST00000527253 HMG20BQ9P0W2 317 aa12.91□□□□□ -0.34
PRPF40B-204ENST00000527253 FAM198AQ9UFP1 575 aa12.91□□□□□ -0.34
PRPF40B-204ENST00000527253 PDS5AQ29RF7 1337 aaKnown RBP12.9□□□□□ -0.34
PRPF40B-204ENST00000527253 TESPA1A2RU30 521 aaPredicted RBP12.9□□□□□ -0.34
PRPF40B-204ENST00000527253 CCDC85CA6NKD9 419 aa12.9□□□□□ -0.34
PRPF40B-204ENST00000527253 GPR25O00155 361 aa12.9□□□□□ -0.34
PRPF40B-204ENST00000527253 MVPQ14764 893 aaKnown RBP12.9□□□□□ -0.34
PRPF40B-204ENST00000527253 TBC1D9Q6ZT07 1266 aa12.9□□□□□ -0.34
PRPF40B-204ENST00000527253 MIGA2Q7L4E1 593 aa12.9□□□□□ -0.34
PRPF40B-204ENST00000527253 FAM151AQ8WW52 585 aa12.9□□□□□ -0.34
PRPF40B-204ENST00000527253 OPTNQ96CV9 577 aa12.9□□□□□ -0.34
PRPF40B-204ENST00000527253 MS4A4AQ96JQ5 239 aa12.9□□□□□ -0.34
PRPF40B-204ENST00000527253 ABCF2Q9UG63 623 aa12.9□□□□□ -0.34
PRPF40B-204ENST00000527253 GAKO14976 1311 aa12.89□□□□□ -0.35
PRPF40B-204ENST00000527253 SURF6O75683 361 aaKnown RBP12.89□□□□□ -0.35
PRPF40B-204ENST00000527253 ARID4AP29374 1257 aaPredicted RBP12.89□□□□□ -0.35
PRPF40B-204ENST00000527253 INHBEP58166 350 aa12.89□□□□□ -0.35
PRPF40B-204ENST00000527253 TCP10Q12799 353 aa12.89□□□□□ -0.35
PRPF40B-204ENST00000527253 CTU1Q7Z7A3 348 aaKnown RBP12.89□□□□□ -0.35
PRPF40B-204ENST00000527253 ZKSCAN4Q969J2 545 aaPredicted RBP12.89□□□□□ -0.35
PRPF40B-204ENST00000527253 NOP58Q9Y2X3 529 aaKnown RBP12.89□□□□□ -0.35
PRPF40B-204ENST00000527253 SNCAIPQ9Y6H5 919 aa12.89□□□□□ -0.35
PRPF40B-204ENST00000527253 RPAP1Q9BWH6 1393 aaPredicted RBP12.89□□□□□ -0.35
PRPF40B-204ENST00000527253 LAMB1P07942 1786 aa12.89□□□□□ -0.35
PRPF40B-204ENST00000527253 MYH2Q9UKX2 1941 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 INPP5BP32019 993 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 MCAMP43121 646 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 MECOMQ03112 1051 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 TNNI3KQ59H18 835 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 NOM1Q5C9Z4 860 aaKnown RBP12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 CEP85Q6P2H3 762 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 SH3BP5LQ7L8J4 393 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 ZGPATQ8N5A5 531 aaKnown RBP12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 SPATA5Q8NB90 893 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 BRI3BPQ8WY22 251 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 FAM163AQ96GL9 167 aaPredicted RBP12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 DBNDD2Q9BQY9 259 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 GPR108Q9NPR9 543 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 FPGT-TNNI3KV9GXZ4 949 aa12.88□□□□□ -0.35
PRPF40B-204ENST00000527253 RFX7Q2KHR2 1363 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 SPDYE5A6NIY4 337 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 ALDH1A1P00352 501 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 SLURP2P0DP57 97 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 RGS3P49796 1198 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 GORABQ5T7V8 394 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 ERICH6Q7L0X2 663 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 OTUD5Q96G74 571 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 WRNIP1Q96S55 665 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 IDI2Q9BXS1 227 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 DDX4Q9NQI0 724 aaKnown RBP12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 SNRKQ9NRH2 765 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 ZNF112Q9UJU3 913 aa12.87□□□□□ -0.35
PRPF40B-204ENST00000527253 ATRNL1Q5VV63 1379 aa12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 GPR75-ASB3A0A0A6YYF3 556 aa12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 WDHD1O75717 1129 aaPredicted RBP12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 BTDP43251 543 aa12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 RHBDL3P58872 404 aa12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 CRHR2Q13324 411 aa12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 SPTY2D1Q68D10 685 aaPredicted RBP12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 DZIP1Q86YF9 867 aaKnown RBP12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 NSUN4Q96CB9 384 aaKnown RBP12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 ZNF341Q9BYN7 854 aa12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 TLR7Q9NYK1 1049 aaKnown RBP12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 CSADQ9Y600 493 aa12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 MROH7-TTC4A0A0A0MT08 1334 aa12.86□□□□□ -0.35
PRPF40B-204ENST00000527253 DDTLA6NHG4 134 aaPredicted RBP12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 IRF6O14896 467 aa12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 FKTNO75072 461 aa12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 ENTPD3O75355 529 aa12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 UQCRFS1P1P0C7P4 283 aa12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 CAP1Q01518 475 aa12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 OS9Q13438 667 aaPredicted RBP12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 DCAF15Q66K64 600 aa12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 ERO1BQ86YB8 467 aa12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 FAM43AQ8N2R8 423 aa12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 EAF2Q96CJ1 260 aaPredicted RBP12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 HOOK2Q96ED9 719 aa12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 CCDC8Q9H0W5 538 aaPredicted RBP12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 DBNLQ9UJU6 430 aaKnown RBP12.85□□□□□ -0.35
PRPF40B-204ENST00000527253 CCL15-CCL14A0A0B4J2E2 113 aa12.84□□□□□ -0.35
PRPF40B-204ENST00000527253 PHF20L1A8MW92 1017 aa12.84□□□□□ -0.35
PRPF40B-204ENST00000527253 RGS19P49795 217 aa12.84□□□□□ -0.35
PRPF40B-204ENST00000527253 GTF2A2P52657 109 aa12.84□□□□□ -0.35
PRPF40B-204ENST00000527253 CCL15Q16663 113 aa12.84□□□□□ -0.35
PRPF40B-204ENST00000527253 SIRT2Q8IXJ6 389 aa12.84□□□□□ -0.35
PRPF40B-204ENST00000527253 RAI14Q9P0K7 980 aa12.84□□□□□ -0.35
PRPF40B-204ENST00000527253 RCAN3Q9UKA8 241 aa12.84□□□□□ -0.35
PRPF40B-204ENST00000527253 EXOC6BQ9Y2D4 811 aa12.84□□□□□ -0.35
PRPF40B-204ENST00000527253 COG6Q9Y2V7 657 aa12.84□□□□□ -0.35
PRPF40B-204ENST00000527253 AK9Q5TCS8 1911 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms