RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 SNCAIPQ9Y6H5 919 aa11.92□□□□□ -0.5
NEDD9-211ENST00000508546 IRF6O14896 467 aa11.91□□□□□ -0.5
NEDD9-211ENST00000508546 GYG1P46976 350 aa11.91□□□□□ -0.5
NEDD9-211ENST00000508546 EPHA10Q5JZY3 1008 aa11.91□□□□□ -0.5
NEDD9-211ENST00000508546 BEND3Q5T5X7 828 aa11.91□□□□□ -0.5
NEDD9-211ENST00000508546 FKBP1CQ5VVH2 108 aa11.91□□□□□ -0.5
NEDD9-211ENST00000508546 C17orf99Q6UX52 265 aa11.91□□□□□ -0.5
NEDD9-211ENST00000508546 FAM83AQ86UY5 434 aa11.91□□□□□ -0.5
NEDD9-211ENST00000508546 HOOK2Q96ED9 719 aa11.91□□□□□ -0.5
NEDD9-211ENST00000508546 RNF208Q9H0X6 261 aa11.91□□□□□ -0.5
NEDD9-211ENST00000508546 LAMA2P24043 3122 aaKnown RBP11.91□□□□□ -0.5
NEDD9-211ENST00000508546 GRM8O00222 908 aa11.9□□□□□ -0.5
NEDD9-211ENST00000508546 GRK4P32298 578 aa11.9□□□□□ -0.5
NEDD9-211ENST00000508546 NCBP3Q53F19 620 aaKnown RBP11.9□□□□□ -0.5
NEDD9-211ENST00000508546 DOCK3Q8IZD9 2030 aa11.9□□□□□ -0.5
NEDD9-211ENST00000508546 TDHQ8IZJ6 230 aa11.9□□□□□ -0.5
NEDD9-211ENST00000508546 TBC1D22AQ8WUA7 517 aa11.9□□□□□ -0.5
NEDD9-211ENST00000508546 WRNIP1Q96S55 665 aa11.9□□□□□ -0.5
NEDD9-211ENST00000508546 MRIQ9BWK5 157 aa11.9□□□□□ -0.5
NEDD9-211ENST00000508546 SRRDQ9UH36 339 aa11.9□□□□□ -0.5
NEDD9-211ENST00000508546 ZMYND8Q9ULU4 1186 aaPredicted RBP11.9□□□□□ -0.5
NEDD9-211ENST00000508546 RIPOR2Q9Y4F9 1068 aa11.9□□□□□ -0.5
NEDD9-211ENST00000508546 RPAP1Q9BWH6 1393 aaPredicted RBP11.9□□□□□ -0.5
NEDD9-211ENST00000508546 COL2A1P02458 1487 aaPredicted RBP11.89□□□□□ -0.51
NEDD9-211ENST00000508546 F6X3S4 739 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 VAMP4O75379 141 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 HOXD10P28358 340 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 ZEB1P37275 1124 aaPredicted RBP11.89□□□□□ -0.51
NEDD9-211ENST00000508546 PSMC4P43686 418 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 PPATQ06203 517 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 DCAF15Q66K64 600 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 FBXO33Q7Z6M2 555 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 ZKSCAN4Q969J2 545 aaPredicted RBP11.89□□□□□ -0.51
NEDD9-211ENST00000508546 TEKT1Q969V4 418 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 TRIM47Q96LD4 638 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 ZDHHC15Q96MV8 337 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 UNC93B1Q9H1C4 597 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 TMOD2Q9NZR1 351 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 CDH23Q9H251 3354 aa11.89□□□□□ -0.51
NEDD9-211ENST00000508546 ADGRA2Q96PE1 1338 aa11.88□□□□□ -0.51
NEDD9-211ENST00000508546 PTPRFP10586 1907 aa11.88□□□□□ -0.51
NEDD9-211ENST00000508546 OSBPP22059 807 aa11.88□□□□□ -0.51
NEDD9-211ENST00000508546 MAGEA10P43363 369 aaPredicted RBP11.88□□□□□ -0.51
NEDD9-211ENST00000508546 CACNB3P54284 484 aa11.88□□□□□ -0.51
NEDD9-211ENST00000508546 GRIK5Q16478 980 aa11.88□□□□□ -0.51
NEDD9-211ENST00000508546 ANKRD23Q86SG2 305 aa11.88□□□□□ -0.51
NEDD9-211ENST00000508546 C7orf61Q8IZ16 206 aa11.88□□□□□ -0.51
NEDD9-211ENST00000508546 RAET1EQ8TD07 263 aa11.88□□□□□ -0.51
NEDD9-211ENST00000508546 SUGT1Q9Y2Z0 365 aa11.88□□□□□ -0.51
NEDD9-211ENST00000508546 MROH5Q6ZUA9 1318 aa11.87□□□□□ -0.51
NEDD9-211ENST00000508546 MYPNQ86TC9 1320 aa11.87□□□□□ -0.51
NEDD9-211ENST00000508546 FANCIQ9NVI1 1328 aa11.87□□□□□ -0.51
NEDD9-211ENST00000508546 APOBEC3HQ6NTF7 200 aaKnown RBP11.87□□□□□ -0.51
NEDD9-211ENST00000508546 VPS37DQ86XT2 251 aa11.87□□□□□ -0.51
NEDD9-211ENST00000508546 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.87□□□□□ -0.51
NEDD9-211ENST00000508546 DIS3LQ8TF46 1054 aaKnown RBP11.87□□□□□ -0.51
NEDD9-211ENST00000508546 ZNF341Q9BYN7 854 aa11.87□□□□□ -0.51
NEDD9-211ENST00000508546 PUS3Q9BZE2 481 aaKnown RBP11.87□□□□□ -0.51
NEDD9-211ENST00000508546 C9orf78Q9NZ63 289 aaPredicted RBP11.87□□□□□ -0.51
NEDD9-211ENST00000508546 CPA4Q9UI42 421 aa11.87□□□□□ -0.51
NEDD9-211ENST00000508546 KCNH4Q9UQ05 1017 aa11.87□□□□□ -0.51
NEDD9-211ENST00000508546 MAST3O60307 1309 aa11.86□□□□□ -0.51
NEDD9-211ENST00000508546 DDX60LQ5H9U9 1706 aaKnown RBP11.86□□□□□ -0.51
NEDD9-211ENST00000508546 PDHXO00330 501 aa11.86□□□□□ -0.51
NEDD9-211ENST00000508546 ALDH1L1O75891 902 aa11.86□□□□□ -0.51
NEDD9-211ENST00000508546 FMNL1O95466 1100 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-211ENST00000508546 SGPL1O95470 568 aa11.86□□□□□ -0.51
NEDD9-211ENST00000508546 SYN1P17600 705 aa11.86□□□□□ -0.51
NEDD9-211ENST00000508546 CAPN2P17655 700 aa11.86□□□□□ -0.51
NEDD9-211ENST00000508546 UBXN2AP68543 259 aa11.86□□□□□ -0.51
NEDD9-211ENST00000508546 CHAF1AQ13111 956 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-211ENST00000508546 CAVIN4Q5BKX8 364 aa11.86□□□□□ -0.51
NEDD9-211ENST00000508546 HHIPL2Q6UWX4 724 aa11.86□□□□□ -0.51
NEDD9-211ENST00000508546 FAM161BQ96MY7 647 aa11.86□□□□□ -0.51
NEDD9-211ENST00000508546 ZNF112Q9UJU3 913 aa11.86□□□□□ -0.51
NEDD9-211ENST00000508546 IQSEC3Q9UPP2 1182 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-211ENST00000508546 FRAT2O75474 233 aaPredicted RBP11.85□□□□□ -0.51
NEDD9-211ENST00000508546 HOXD11P31277 338 aaPredicted RBP11.85□□□□□ -0.51
NEDD9-211ENST00000508546 INPP5BP32019 993 aa11.85□□□□□ -0.51
NEDD9-211ENST00000508546 PRKCZQ05513 592 aa11.85□□□□□ -0.51
NEDD9-211ENST00000508546 KAZALD1Q96I82 304 aa11.85□□□□□ -0.51
NEDD9-211ENST00000508546 BIN2Q9UBW5 565 aaPredicted RBP11.85□□□□□ -0.51
NEDD9-211ENST00000508546 DOCK2Q92608 1830 aa11.85□□□□□ -0.51
NEDD9-211ENST00000508546 KIF16BQ96L93 1317 aa11.85□□□□□ -0.51
NEDD9-211ENST00000508546 PHIPQ8WWQ0 1821 aa11.84□□□□□ -0.51
NEDD9-211ENST00000508546 BCRP11274 1271 aa11.84□□□□□ -0.51
NEDD9-211ENST00000508546 EXOSC9Q06265 439 aaKnown RBP11.84□□□□□ -0.51
NEDD9-211ENST00000508546 MOGSQ13724 837 aa11.84□□□□□ -0.51
NEDD9-211ENST00000508546 NOL9Q5SY16 702 aaKnown RBP11.84□□□□□ -0.51
NEDD9-211ENST00000508546 MIGA2Q7L4E1 593 aa11.84□□□□□ -0.51
NEDD9-211ENST00000508546 VGLL2Q8N8G2 317 aa11.84□□□□□ -0.51
NEDD9-211ENST00000508546 SLAIN1Q8ND83 568 aa11.84□□□□□ -0.51
NEDD9-211ENST00000508546 FAM151AQ8WW52 585 aa11.84□□□□□ -0.51
NEDD9-211ENST00000508546 FAM122AQ96E09 287 aa11.84□□□□□ -0.51
NEDD9-211ENST00000508546 SUCLG2Q96I99 432 aa11.84□□□□□ -0.51
NEDD9-211ENST00000508546 PAWRQ96IZ0 340 aaKnown RBP11.84□□□□□ -0.51
NEDD9-211ENST00000508546 PARK7Q99497 189 aaKnown RBP11.84□□□□□ -0.51
NEDD9-211ENST00000508546 MYH2Q9UKX2 1941 aa11.84□□□□□ -0.51
NEDD9-211ENST00000508546 CXCL11O14625 94 aa11.83□□□□□ -0.52
NEDD9-211ENST00000508546 PDE8BO95263 885 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms