RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 SPATA5Q8NB90 893 aa12.23□□□□□ -0.45
NUP54-203ENST00000504173 OTUD7AQ8TE49 926 aaPredicted RBP12.23□□□□□ -0.45
NUP54-203ENST00000504173 DCPSQ96C86 337 aaKnown RBP12.23□□□□□ -0.45
NUP54-203ENST00000504173 ZNF512BQ96KM6 892 aaPredicted RBP12.23□□□□□ -0.45
NUP54-203ENST00000504173 ECHDC1Q9NTX5 307 aa12.23□□□□□ -0.45
NUP54-203ENST00000504173 PDS5AQ29RF7 1337 aaKnown RBP12.22□□□□□ -0.45
NUP54-203ENST00000504173 MYO3BQ8WXR4 1341 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 A0A1W2PPC1 479 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 ZBTB22O15209 634 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 MX1P20591 662 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 MCAMP43121 646 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 SCARF1Q14162 830 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 MFSD14BQ5SR56 506 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 RSBN1LQ6PCB5 846 aaPredicted RBP12.22□□□□□ -0.45
NUP54-203ENST00000504173 PI16Q6UXB8 463 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 WDR66Q8TBY9 1149 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 TBC1D22AQ8WUA7 517 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 MXD3Q9BW11 206 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 SNRKQ9NRH2 765 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 HMG20BQ9P0W2 317 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 ZBTB12Q9Y330 459 aaPredicted RBP12.22□□□□□ -0.45
NUP54-203ENST00000504173 TRIM17Q9Y577 477 aa12.22□□□□□ -0.45
NUP54-203ENST00000504173 TTC41PQ6P2S7 1318 aa12.21□□□□□ -0.45
NUP54-203ENST00000504173 ERC2O15083 957 aa12.21□□□□□ -0.45
NUP54-203ENST00000504173 ATP5JP18859 108 aa12.21□□□□□ -0.45
NUP54-203ENST00000504173 RPS12P25398 132 aaKnown RBP12.21□□□□□ -0.45
NUP54-203ENST00000504173 FKBP1AP62942 108 aaKnown RBP12.21□□□□□ -0.45
NUP54-203ENST00000504173 TSHZ3Q63HK5 1081 aa12.21□□□□□ -0.45
NUP54-203ENST00000504173 ZGPATQ8N5A5 531 aaKnown RBP12.21□□□□□ -0.45
NUP54-203ENST00000504173 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.21□□□□□ -0.45
NUP54-203ENST00000504173 BOLA2Q9H3K6 86 aa12.21□□□□□ -0.45
NUP54-203ENST00000504173 PTPN22Q9Y2R2 807 aa12.21□□□□□ -0.45
NUP54-203ENST00000504173 ZNF646O15015 1829 aaPredicted RBP12.21□□□□□ -0.46
NUP54-203ENST00000504173 SALL3Q9BXA9 1300 aa12.2□□□□□ -0.46
NUP54-203ENST00000504173 ZAP70P43403 619 aa12.2□□□□□ -0.46
NUP54-203ENST00000504173 PDE1AP54750 535 aa12.2□□□□□ -0.46
NUP54-203ENST00000504173 SAMD7Q7Z3H4 446 aa12.2□□□□□ -0.46
NUP54-203ENST00000504173 CERS5Q8N5B7 392 aa12.2□□□□□ -0.46
NUP54-203ENST00000504173 AGBL3Q8NEM8 1001 aa12.2□□□□□ -0.46
NUP54-203ENST00000504173 CDCA5Q96FF9 252 aa12.2□□□□□ -0.46
NUP54-203ENST00000504173 DNAJC2Q99543 621 aaKnown RBP12.2□□□□□ -0.46
NUP54-203ENST00000504173 TMEM106CQ9BVX2 250 aa12.2□□□□□ -0.46
NUP54-203ENST00000504173 R3HDMLQ9H3Y0 253 aa12.2□□□□□ -0.46
NUP54-203ENST00000504173 PRDM6Q9NQX0 595 aa12.2□□□□□ -0.46
NUP54-203ENST00000504173 SALL1Q9NSC2 1324 aa12.19□□□□□ -0.46
NUP54-203ENST00000504173 F8W031 263 aaPredicted RBP12.19□□□□□ -0.46
NUP54-203ENST00000504173 GLRX3O76003 335 aaKnown RBP12.19□□□□□ -0.46
NUP54-203ENST00000504173 EGFRP00533 1210 aa12.19□□□□□ -0.46
NUP54-203ENST00000504173 PDE4AP27815 886 aa12.19□□□□□ -0.46
NUP54-203ENST00000504173 SREBF2Q12772 1141 aa12.19□□□□□ -0.46
NUP54-203ENST00000504173 GPR153Q6NV75 609 aa12.19□□□□□ -0.46
NUP54-203ENST00000504173 KIAA0825Q8IV33 1275 aa12.19□□□□□ -0.46
NUP54-203ENST00000504173 SULF1Q8IWU6 871 aa12.19□□□□□ -0.46
NUP54-203ENST00000504173 ZNF333Q96JL9 665 aa12.19□□□□□ -0.46
NUP54-203ENST00000504173 ABCF2Q9UG63 623 aa12.19□□□□□ -0.46
NUP54-203ENST00000504173 NDUFB9Q9Y6M9 179 aa12.19□□□□□ -0.46
NUP54-203ENST00000504173 AOX1Q06278 1338 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 ALDH1A1P00352 501 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 CYP2E1P05181 493 aaPredicted RBP12.18□□□□□ -0.46
NUP54-203ENST00000504173 USP17L8P0C7I0 530 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 PRDX5P30044 214 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 SPTY2D1Q68D10 685 aaPredicted RBP12.18□□□□□ -0.46
NUP54-203ENST00000504173 TBC1D9Q6ZT07 1266 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 ERICH6Q7L0X2 663 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 PLEKHM2Q8IWE5 1019 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 PI4K2BQ8TCG2 481 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 GMLQ99445 158 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 HAUS7Q99871 368 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 STAP2Q9UGK3 403 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 TTF2Q9UNY4 1162 aaKnown RBP12.18□□□□□ -0.46
NUP54-203ENST00000504173 STXBP5LQ9Y2K9 1186 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 SUGT1Q9Y2Z0 365 aa12.18□□□□□ -0.46
NUP54-203ENST00000504173 POLR2AP24928 1970 aaKnown RBP12.18□□□□□ -0.46
NUP54-203ENST00000504173 MAST3O60307 1309 aa12.17□□□□□ -0.46
NUP54-203ENST00000504173 VCANP13611 3396 aa12.17□□□□□ -0.46
NUP54-203ENST00000504173 GOLIM4O00461 696 aa12.17□□□□□ -0.46
NUP54-203ENST00000504173 SOX1O00570 391 aaPredicted RBP12.17□□□□□ -0.46
NUP54-203ENST00000504173 LDHBP07195 334 aaKnown RBP12.17□□□□□ -0.46
NUP54-203ENST00000504173 TTF1Q15361 905 aaPredicted RBP12.17□□□□□ -0.46
NUP54-203ENST00000504173 GRIK5Q16478 980 aa12.17□□□□□ -0.46
NUP54-203ENST00000504173 TBC1D10BQ4KMP7 808 aaPredicted RBP12.17□□□□□ -0.46
NUP54-203ENST00000504173 DZIP1Q86YF9 867 aaKnown RBP12.17□□□□□ -0.46
NUP54-203ENST00000504173 OGFOD1Q8N543 542 aa12.17□□□□□ -0.46
NUP54-203ENST00000504173 PIH1D3Q9NQM4 214 aaKnown RBP12.17□□□□□ -0.46
NUP54-203ENST00000504173 PAG1Q9NWQ8 432 aa12.17□□□□□ -0.46
NUP54-203ENST00000504173 RAI14Q9P0K7 980 aa12.17□□□□□ -0.46
NUP54-203ENST00000504173 LRP2BPQ9P2M1 347 aa12.17□□□□□ -0.46
NUP54-203ENST00000504173 GTF3C3Q9Y5Q9 886 aa12.17□□□□□ -0.46
NUP54-203ENST00000504173 SPTBN5Q9NRC6 3674 aaKnown RBP12.17□□□□□ -0.46
NUP54-203ENST00000504173 IDH1O75874 414 aaKnown RBP12.16□□□□□ -0.46
NUP54-203ENST00000504173 MAP4K4O95819 1239 aaPredicted RBP12.16□□□□□ -0.46
NUP54-203ENST00000504173 EDC3Q96F86 508 aaKnown RBP12.16□□□□□ -0.46
NUP54-203ENST00000504173 OSBPL3Q9H4L5 887 aa12.16□□□□□ -0.46
NUP54-203ENST00000504173 ANTXR1Q9H6X2 564 aa12.16□□□□□ -0.46
NUP54-203ENST00000504173 GGA3Q9NZ52 723 aa12.16□□□□□ -0.46
NUP54-203ENST00000504173 MMP14P50281 582 aa12.15□□□□□ -0.46
NUP54-203ENST00000504173 ZNF280AP59817 542 aaPredicted RBP12.15□□□□□ -0.46
NUP54-203ENST00000504173 MAP3K12Q12852 859 aa12.15□□□□□ -0.46
NUP54-203ENST00000504173 RBM26Q5T8P6 1007 aaKnown RBP12.15□□□□□ -0.46
NUP54-203ENST00000504173 SKAP1Q86WV1 359 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms