RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ALPK3Q96L96 1907 aa20.93■□□□□ 0.94
VIM-208ENST00000497849 SGPL1O95470 568 aa20.92■□□□□ 0.94
VIM-208ENST00000497849 BEND3Q5T5X7 828 aa20.92■□□□□ 0.94
VIM-208ENST00000497849 MIGA2Q7L4E1 593 aa20.92■□□□□ 0.94
VIM-208ENST00000497849 IQSEC3Q9UPP2 1182 aaPredicted RBP20.92■□□□□ 0.94
VIM-208ENST00000497849 KCNH4Q9UQ05 1017 aa20.92■□□□□ 0.94
VIM-208ENST00000497849 BCRP11274 1271 aa20.91■□□□□ 0.94
VIM-208ENST00000497849 MNX1P50219 401 aaPredicted RBP20.91■□□□□ 0.94
VIM-208ENST00000497849 FKBP1CQ5VVH2 108 aa20.91■□□□□ 0.94
VIM-208ENST00000497849 APOBEC3HQ6NTF7 200 aaKnown RBP20.91■□□□□ 0.94
VIM-208ENST00000497849 TEKT1Q969V4 418 aa20.91■□□□□ 0.94
VIM-208ENST00000497849 HOOK2Q96ED9 719 aa20.91■□□□□ 0.94
VIM-208ENST00000497849 ZDHHC15Q96MV8 337 aa20.91■□□□□ 0.94
VIM-208ENST00000497849 RPAP1Q9BWH6 1393 aaPredicted RBP20.91■□□□□ 0.94
VIM-208ENST00000497849 ZNF341Q9BYN7 854 aa20.91■□□□□ 0.94
VIM-208ENST00000497849 PUS3Q9BZE2 481 aaKnown RBP20.91■□□□□ 0.94
VIM-208ENST00000497849 STAP2Q9UGK3 403 aa20.91■□□□□ 0.94
VIM-208ENST00000497849 GABRQQ9UN88 632 aa20.91■□□□□ 0.94
VIM-208ENST00000497849 F6X3S4 739 aa20.9■□□□□ 0.94
VIM-208ENST00000497849 EVI5O60447 810 aa20.9■□□□□ 0.94
VIM-208ENST00000497849 DCAF15Q66K64 600 aa20.9■□□□□ 0.94
VIM-208ENST00000497849 FBXO33Q7Z6M2 555 aa20.9■□□□□ 0.94
VIM-208ENST00000497849 SLAIN1Q8ND83 568 aa20.9■□□□□ 0.94
VIM-208ENST00000497849 CHAF1AQ13111 956 aaPredicted RBP20.89■□□□□ 0.93
VIM-208ENST00000497849 MRIQ9BWK5 157 aa20.89■□□□□ 0.93
VIM-208ENST00000497849 TMOD2Q9NZR1 351 aa20.89■□□□□ 0.93
VIM-208ENST00000497849 FCGRTP55899 365 aa20.88■□□□□ 0.93
VIM-208ENST00000497849 TBC1D22AQ8WUA7 517 aa20.88■□□□□ 0.93
VIM-208ENST00000497849 ZNF112Q9UJU3 913 aa20.88■□□□□ 0.93
VIM-208ENST00000497849 UNC80Q8N2C7 3258 aa20.87■□□□□ 0.93
VIM-208ENST00000497849 GRM8O00222 908 aa20.87■□□□□ 0.93
VIM-208ENST00000497849 CYP2C8P10632 490 aa20.87■□□□□ 0.93
VIM-208ENST00000497849 GPAT2Q6NUI2 795 aa20.87■□□□□ 0.93
VIM-208ENST00000497849 WWC1Q8IX03 1113 aa20.86■□□□□ 0.93
VIM-208ENST00000497849 PARK7Q99497 189 aaKnown RBP20.86■□□□□ 0.93
VIM-208ENST00000497849 PRKRIP1Q9H875 184 aaPredicted RBP20.86■□□□□ 0.93
VIM-208ENST00000497849 AK9Q5TCS8 1911 aa20.85■□□□□ 0.93
VIM-208ENST00000497849 ADCY3O60266 1144 aa20.85■□□□□ 0.93
VIM-208ENST00000497849 ELNP15502 786 aa20.85■□□□□ 0.93
VIM-208ENST00000497849 CCDC27Q2M243 656 aa20.85■□□□□ 0.93
VIM-208ENST00000497849 VPS37DQ86XT2 251 aa20.85■□□□□ 0.93
VIM-208ENST00000497849 DEFB118Q96PH6 123 aa20.85■□□□□ 0.93
VIM-208ENST00000497849 GDF15Q99988 308 aa20.85■□□□□ 0.93
VIM-208ENST00000497849 DOCK3Q8IZD9 2030 aa20.84■□□□□ 0.93
VIM-208ENST00000497849 VAMP4O75379 141 aa20.84■□□□□ 0.93
VIM-208ENST00000497849 TFRCP02786 760 aaKnown RBP20.84■□□□□ 0.93
VIM-208ENST00000497849 INHAP05111 366 aa20.84■□□□□ 0.93
VIM-208ENST00000497849 FLT3LGP49771 235 aa20.84■□□□□ 0.93
VIM-208ENST00000497849 NOL9Q5SY16 702 aaKnown RBP20.84■□□□□ 0.93
VIM-208ENST00000497849 HHIPL2Q6UWX4 724 aa20.84■□□□□ 0.93
VIM-208ENST00000497849 FAM151AQ8WW52 585 aa20.84■□□□□ 0.93
VIM-208ENST00000497849 KAZALD1Q96I82 304 aa20.84■□□□□ 0.93
VIM-208ENST00000497849 MROH5Q6ZUA9 1318 aa20.83■□□□□ 0.93
VIM-208ENST00000497849 FRAT2O75474 233 aaPredicted RBP20.83■□□□□ 0.93
VIM-208ENST00000497849 BMP8BP34820 402 aa20.83■□□□□ 0.93
VIM-208ENST00000497849 GPR153Q6NV75 609 aa20.83■□□□□ 0.93
VIM-208ENST00000497849 PXYLP1Q8TE99 480 aa20.83■□□□□ 0.93
VIM-208ENST00000497849 PAWRQ96IZ0 340 aaKnown RBP20.83■□□□□ 0.93
VIM-208ENST00000497849 CRISPLD2Q9H0B8 497 aa20.83■□□□□ 0.93
VIM-208ENST00000497849 PAK6Q9NQU5 681 aaPredicted RBP20.83■□□□□ 0.93
VIM-208ENST00000497849 CAPN2P17655 700 aa20.82■□□□□ 0.92
VIM-208ENST00000497849 DEFB123Q8N688 67 aa20.82■□□□□ 0.92
VIM-208ENST00000497849 SUGT1Q9Y2Z0 365 aa20.82■□□□□ 0.92
VIM-208ENST00000497849 MAST3O60307 1309 aa20.81■□□□□ 0.92
VIM-208ENST00000497849 IL16Q14005 1332 aa20.81■□□□□ 0.92
VIM-208ENST00000497849 FANCIQ9NVI1 1328 aa20.81■□□□□ 0.92
VIM-208ENST00000497849 CXCL11O14625 94 aa20.81■□□□□ 0.92
VIM-208ENST00000497849 BCAMP50895 628 aa20.81■□□□□ 0.92
VIM-208ENST00000497849 IRF5Q13568 498 aa20.81■□□□□ 0.92
VIM-208ENST00000497849 CAVIN4Q5BKX8 364 aa20.81■□□□□ 0.92
VIM-208ENST00000497849 Q7L0L9 218 aa20.81■□□□□ 0.92
VIM-208ENST00000497849 VGLL2Q8N8G2 317 aa20.81■□□□□ 0.92
VIM-208ENST00000497849 DIS3LQ8TF46 1054 aaKnown RBP20.81■□□□□ 0.92
VIM-208ENST00000497849 SUCLG2Q96I99 432 aa20.81■□□□□ 0.92
VIM-208ENST00000497849 C9orf78Q9NZ63 289 aaPredicted RBP20.81■□□□□ 0.92
VIM-208ENST00000497849 PTPRFP10586 1907 aa20.8■□□□□ 0.92
VIM-208ENST00000497849 TCP10Q12799 353 aa20.8■□□□□ 0.92
VIM-208ENST00000497849 NFIAQ12857 509 aa20.8■□□□□ 0.92
VIM-208ENST00000497849 LRRC24Q50LG9 513 aa20.8■□□□□ 0.92
VIM-208ENST00000497849 CDC42EP5Q6NZY7 148 aa20.79■□□□□ 0.92
VIM-208ENST00000497849 STXBP5LQ9Y2K9 1186 aa20.79■□□□□ 0.92
VIM-208ENST00000497849 MYH13Q9UKX3 1938 aa20.78■□□□□ 0.92
VIM-208ENST00000497849 A0A0G2JLL6 359 aaPredicted RBP20.78■□□□□ 0.92
VIM-208ENST00000497849 TNPO2O14787 897 aaKnown RBP20.78■□□□□ 0.92
VIM-208ENST00000497849 PDE8BO95263 885 aa20.78■□□□□ 0.92
VIM-208ENST00000497849 NECAB2Q7Z6G3 386 aa20.78■□□□□ 0.92
VIM-208ENST00000497849 PRRT2Q7Z6L0 340 aaPredicted RBP20.78■□□□□ 0.92
VIM-208ENST00000497849 FAM198AQ9UFP1 575 aa20.78■□□□□ 0.92
VIM-208ENST00000497849 ZMYND8Q9ULU4 1186 aaPredicted RBP20.78■□□□□ 0.92
VIM-208ENST00000497849 ALDH1L1O75891 902 aa20.77■□□□□ 0.92
VIM-208ENST00000497849 LRIT3Q3SXY7 679 aa20.77■□□□□ 0.92
VIM-208ENST00000497849 METTL24Q5JXM2 366 aa20.77■□□□□ 0.92
VIM-208ENST00000497849 FASTKD5Q7L8L6 764 aaKnown RBP20.77■□□□□ 0.92
VIM-208ENST00000497849 C7orf61Q8IZ16 206 aa20.77■□□□□ 0.92
VIM-208ENST00000497849 MTMR10Q9NXD2 777 aa20.77■□□□□ 0.92
VIM-208ENST00000497849 DAGLAQ9Y4D2 1042 aa20.77■□□□□ 0.92
VIM-208ENST00000497849 PHIPQ8WWQ0 1821 aa20.76■□□□□ 0.91
VIM-208ENST00000497849 ATRNL1Q5VV63 1379 aa20.76■□□□□ 0.91
VIM-208ENST00000497849 PHF20L1A8MW92 1017 aa20.76■□□□□ 0.91
VIM-208ENST00000497849 NBPF7P0C2Y1 421 aaPredicted RBP20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms