RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 DHX32Q7L7V1 743 aaKnown RBP8.17□□□□□ -1.1
USP39-219ENST00000496047 NBPF5PQ86XG9 351 aaPredicted RBP8.17□□□□□ -1.1
USP39-219ENST00000496047 VPS37DQ86XT2 251 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 GPIHBP1Q8IV16 184 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 VGLL2Q8N8G2 317 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 LINC00116Q8NCU8 138 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 NCOA7Q8NI08 942 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 OXER1Q8TDS5 423 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 ZC3H15Q8WU90 426 aaKnown RBP8.17□□□□□ -1.1
USP39-219ENST00000496047 AIDAQ96BJ3 306 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 NLRP3Q96P20 1036 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 LLPHQ9BRT6 129 aaKnown RBP8.17□□□□□ -1.1
USP39-219ENST00000496047 GZF1Q9H116 711 aaPredicted RBP8.17□□□□□ -1.1
USP39-219ENST00000496047 NDUFB9Q9Y6M9 179 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 ZMYM6O95789 1325 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 WDR19Q8NEZ3 1342 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 MYH1P12882 1939 aa8.17□□□□□ -1.1
USP39-219ENST00000496047 VPS37CA5D8V6 355 aaPredicted RBP8.16□□□□□ -1.1
USP39-219ENST00000496047 ZNF213O14771 459 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 KCNQ2O43526 872 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 DHX16O60231 1041 aaKnown RBP8.16□□□□□ -1.1
USP39-219ENST00000496047 F13A1P00488 732 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 CYP21A2P08686 494 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 RFC4P35249 363 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 ADD2P35612 726 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 MCAMP43121 646 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 PRELPP51888 382 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 UBE4AQ14139 1066 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 SF3B3Q15393 1217 aaKnown RBP8.16□□□□□ -1.1
USP39-219ENST00000496047 QSER1Q2KHR3 1735 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 FOCADQ5VW36 1801 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 LARP1BQ659C4 914 aaKnown RBP8.16□□□□□ -1.1
USP39-219ENST00000496047 TMED8Q6PL24 325 aaPredicted RBP8.16□□□□□ -1.1
USP39-219ENST00000496047 Q6ZUG5 572 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 SPATA5Q8NB90 893 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 NACAP1Q9BZK3 213 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 ANKRD2Q9GZV1 360 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 HCSTQ9UBK5 93 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 LHX6Q9UPM6 363 aa8.16□□□□□ -1.1
USP39-219ENST00000496047 LRRC37AA6NMS7 1700 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 H3BQV1 296 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 M0R2C6 588 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 GPAA1O43292 621 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 IGSF3O75054 1194 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 PRPF40AO75400 957 aaKnown RBP8.15□□□□□ -1.1
USP39-219ENST00000496047 LETM1O95202 739 aaPredicted RBP8.15□□□□□ -1.1
USP39-219ENST00000496047 APPP05067 770 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 FGFR2P21802 821 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 MCM5P33992 734 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 KRT85P78386 507 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 CHRNDQ07001 517 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 SLC27A3Q5K4L6 730 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 SLC9C2Q5TAH2 1124 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 FOXD4L5Q5VV16 416 aaPredicted RBP8.15□□□□□ -1.1
USP39-219ENST00000496047 CPLX2Q6PUV4 134 aaKnown RBP8.15□□□□□ -1.1
USP39-219ENST00000496047 BICDL1Q6ZP65 573 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 SYNE4Q8N205 404 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 PTCD2Q8WV60 388 aaKnown RBP8.15□□□□□ -1.1
USP39-219ENST00000496047 FOXD4L4Q8WXT5 416 aaPredicted RBP8.15□□□□□ -1.1
USP39-219ENST00000496047 GTF3C6Q969F1 213 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 SEC62Q99442 399 aaKnown RBP8.15□□□□□ -1.1
USP39-219ENST00000496047 CNNM2Q9H8M5 875 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 DENND2AQ9ULE3 1009 aa8.15□□□□□ -1.1
USP39-219ENST00000496047 NAP1L2Q9ULW6 460 aaPredicted RBP8.15□□□□□ -1.1
USP39-219ENST00000496047 ZNF532Q9HCE3 1301 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 E7EWF7 191 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 CPA1P15085 419 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 SYT1P21579 422 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 MLLT3P42568 568 aaPredicted RBP8.14□□□□□ -1.11
USP39-219ENST00000496047 PHKA1P46020 1223 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 ST5P78524 1137 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 SART3Q15020 963 aaKnown RBP8.14□□□□□ -1.11
USP39-219ENST00000496047 ME3Q16798 604 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 ERFEQ4G0M1 354 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 TRAPPC3LQ5T215 181 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 CAVIN1Q6NZI2 390 aaKnown RBP8.14□□□□□ -1.11
USP39-219ENST00000496047 FAM196AQ6ZSG2 479 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 BRF1Q92994 677 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 OSBP2Q969R2 916 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 NAPBQ9H115 298 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 ZSCAN16Q9H4T2 348 aaPredicted RBP8.14□□□□□ -1.11
USP39-219ENST00000496047 LMBRD1Q9NUN5 540 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 BSDC1Q9NW68 430 aaPredicted RBP8.14□□□□□ -1.11
USP39-219ENST00000496047 LRP2BPQ9P2M1 347 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 TPCN1Q9ULQ1 816 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 PCDHGA4Q9Y5G9 962 aa8.14□□□□□ -1.11
USP39-219ENST00000496047 PDS5AQ29RF7 1337 aaKnown RBP8.13□□□□□ -1.11
USP39-219ENST00000496047 ERICH2A1L162 156 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 GOLGA6L4A6NEF3 574 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 GRXCR2A6NFK2 248 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 EVI5O60447 810 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 CDKL5O76039 1030 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 LARGE1O95461 756 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 PDE6AP16499 860 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 STK3Q13188 491 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 PKP1Q13835 747 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 TOB2Q14106 344 aaPredicted RBP8.13□□□□□ -1.11
USP39-219ENST00000496047 SLC10A5Q5PT55 438 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 TBC1D9BQ66K14 1250 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 SEPT12Q8IYM1 358 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms