RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 EIF5P55010 431 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 EVCP57679 992 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 GOLGA8FQ08AF8 430 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 GOLGA8DPQ0D2H9 430 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 RRP12Q5JTH9 1297 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 ZKSCAN3Q9BRR0 538 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 DOT1LQ8TEK3 1739 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 KCNQ2O43526 872 aa19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 SF3A1Q15459 793 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 NIP7Q9Y221 180 aaKnown RBP eCLIP19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 CCDC69A6NI79 296 aa19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 SMC2O95347 1197 aa19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 FGFR2P21802 821 aa19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 ARID4AP29374 1257 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 STK38Q15208 465 aa19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 CEP135Q66GS9 1140 aa19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 FBXO18Q8NFZ0 1043 aa19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 STRBPQ96SI9 672 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 TOMM22Q9NS69 142 aa19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 CCDC87Q9NVE4 849 aa19.2■□□□□ 0.66
CCDC88B-210ENST00000494566 ERVV-1B6SEH8 477 aa19.19■□□□□ 0.66
CCDC88B-210ENST00000494566 NDUFA8P51970 172 aa19.19■□□□□ 0.66
CCDC88B-210ENST00000494566 TTF1Q15361 905 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-210ENST00000494566 MARCH10Q8NA82 808 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-210ENST00000494566 MARCKSP29966 332 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-210ENST00000494566 METAP2P50579 478 aaKnown RBP eCLIP19.19■□□□□ 0.66
CCDC88B-210ENST00000494566 NFXL1Q6ZNB6 911 aa19.19■□□□□ 0.66
CCDC88B-210ENST00000494566 CCDC82Q8N4S0 544 aa19.19■□□□□ 0.66
CCDC88B-210ENST00000494566 ENGASEQ8NFI3 743 aa19.19■□□□□ 0.66
CCDC88B-210ENST00000494566 ANGEL1Q9UNK9 670 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-210ENST00000494566 LOC102724428A0A0B4J2F2 783 aa19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 SMIM22K7EJ46 135 aa19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 SIK1P57059 783 aa19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 UBE3CQ15386 1083 aa19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 LRRC8AQ8IWT6 810 aa19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 TDRD7Q8NHU6 1098 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 UTP14AQ9BVJ6 771 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 ZNF215Q9UL58 517 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 TICAM2Q86XR7 235 aa19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 LINC00301Q8NCQ3 95 aa19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 ST7Q9NRC1 585 aa19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 SH2B2O14492 632 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 SLC5A1P13866 664 aa19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 FAM160A1Q05DH4 1040 aa19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 IQCB1Q15051 598 aa19.18■□□□□ 0.66
CCDC88B-210ENST00000494566 COL4A1P02462 1669 aa19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 MYSM1Q5VVJ2 828 aa19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 BICDL1Q6ZP65 573 aa19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 FAM177A1Q8N128 213 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 CMTR1Q8N1G2 835 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 FBXL16Q8N461 479 aa19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 COL16A1Q07092 1604 aaPredicted RBP19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 ABCC12Q96J65 1359 aa19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 DHX16O60231 1041 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 CAMTA2O94983 1202 aa19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 APOA5Q6Q788 366 aa19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 IFNL3Q8IZI9 196 aa19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 LCORLQ8N3X6 602 aa19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 ALG1Q9BT22 464 aa19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 NAPBQ9H115 298 aa19.17■□□□□ 0.66
CCDC88B-210ENST00000494566 MROH5Q6ZUA9 1318 aa19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 MYH14Q7Z406 1995 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 COL14A1Q05707 1796 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 UQCRFS1P1P0C7P4 283 aa19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 DMTNQ08495 405 aa19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 DPCR1Q3MIW9 517 aa19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 ZNF771Q7L3S4 317 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 LRRN4CLQ8ND94 238 aa19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 MRPS27Q92552 414 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 ROBO1Q9Y6N7 1651 aa19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 KIF23Q02241 960 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 TMEM67Q5HYA8 995 aa19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 C3orf67Q6ZVT6 689 aa19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 RTEL1Q9NZ71 1219 aa19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 ZSWIM5Q9P217 1185 aa19.16■□□□□ 0.66
CCDC88B-210ENST00000494566 TPM3P06753 285 aa19.15■□□□□ 0.66
CCDC88B-210ENST00000494566 ELF2Q15723 593 aa19.15■□□□□ 0.66
CCDC88B-210ENST00000494566 ZNF512BQ96KM6 892 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-210ENST00000494566 PTPN14Q15678 1187 aa19.15■□□□□ 0.66
CCDC88B-210ENST00000494566 DHX40Q8IX18 779 aaKnown RBP19.15■□□□□ 0.66
CCDC88B-210ENST00000494566 FMR1NBQ8N0W7 255 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-210ENST00000494566 ABCF2Q9UG63 623 aa19.15■□□□□ 0.66
CCDC88B-210ENST00000494566 TAF1P21675 1872 aa19.15■□□□□ 0.66
CCDC88B-210ENST00000494566 A0A0U1RQG5 324 aaPredicted RBP19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 SPTLC2O15270 562 aa19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 RANBP6O60518 1105 aaKnown RBP19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 LMOD1P29536 600 aaPredicted RBP19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 MAP3K12Q12852 859 aa19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 ZRSR1Q15695 479 aaKnown RBP19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 STX1AQ16623 288 aa19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 SYNE3Q6ZMZ3 975 aa19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 TMC6Q7Z403 805 aa19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 CCDC24Q8N4L8 307 aa19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 IGDCC4Q8TDY8 1250 aa19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 ZMYM6O95789 1325 aa19.14■□□□□ 0.66
CCDC88B-210ENST00000494566 CHRNDQ07001 517 aa19.14■□□□□ 0.65
CCDC88B-210ENST00000494566 ANKRD7Q92527 254 aa19.14■□□□□ 0.65
CCDC88B-210ENST00000494566 LY9Q9HBG7 655 aa19.14■□□□□ 0.65
CCDC88B-210ENST00000494566 IFIT3O14879 490 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-210ENST00000494566 GYG1P46976 350 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms