RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 CAVIN4Q5BKX8 364 aa13.3□□□□□ -0.28
COL6A3-214ENST00000493608 ATF7IPQ6VMQ6 1270 aa13.3□□□□□ -0.28
COL6A3-214ENST00000493608 ZBED3Q96IU2 234 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-214ENST00000493608 PRMT6Q96LA8 375 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-214ENST00000493608 AOX1Q06278 1338 aa13.3□□□□□ -0.28
COL6A3-214ENST00000493608 UBE2Q2LH0YL09 131 aa13.29□□□□□ -0.28
COL6A3-214ENST00000493608 IFIT1P09914 478 aaKnown RBP13.29□□□□□ -0.28
COL6A3-214ENST00000493608 FGFR2P21802 821 aa13.29□□□□□ -0.28
COL6A3-214ENST00000493608 MMP14P50281 582 aa13.29□□□□□ -0.28
COL6A3-214ENST00000493608 FKBP1AP62942 108 aaKnown RBP13.29□□□□□ -0.28
COL6A3-214ENST00000493608 PUM3Q15397 648 aaKnown RBP13.29□□□□□ -0.28
COL6A3-214ENST00000493608 TNS4Q8IZW8 715 aa13.29□□□□□ -0.28
COL6A3-214ENST00000493608 BEGAINQ9BUH8 593 aa13.29□□□□□ -0.28
COL6A3-214ENST00000493608 TTF2Q9UNY4 1162 aaKnown RBP13.29□□□□□ -0.28
COL6A3-214ENST00000493608 FAM155AB1AL88 458 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-214ENST00000493608 GNAI3P08754 354 aa13.28□□□□□ -0.28
COL6A3-214ENST00000493608 HSPA8P11142 646 aaKnown RBP13.28□□□□□ -0.28
COL6A3-214ENST00000493608 TTLL12Q14166 644 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-214ENST00000493608 ZKSCAN2Q63HK3 967 aa13.28□□□□□ -0.28
COL6A3-214ENST00000493608 TMEM57Q8N5G2 664 aa13.28□□□□□ -0.28
COL6A3-214ENST00000493608 MTMR14Q8NCE2 650 aa13.28□□□□□ -0.28
COL6A3-214ENST00000493608 VEZTQ9HBM0 779 aa13.28□□□□□ -0.28
COL6A3-214ENST00000493608 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-214ENST00000493608 CEP126Q9P2H0 1117 aa13.28□□□□□ -0.28
COL6A3-214ENST00000493608 FZD1Q9UP38 647 aa13.28□□□□□ -0.28
COL6A3-214ENST00000493608 HDAC5Q9UQL6 1122 aa13.28□□□□□ -0.28
COL6A3-214ENST00000493608 THSD7BQ9C0I4 1608 aa13.28□□□□□ -0.28
COL6A3-214ENST00000493608 ECM29Q5VYK3 1845 aa13.27□□□□□ -0.28
COL6A3-214ENST00000493608 SLC5A1P13866 664 aa13.27□□□□□ -0.29
COL6A3-214ENST00000493608 NOGQ13253 232 aa13.27□□□□□ -0.29
COL6A3-214ENST00000493608 APOBEC3FQ8IUX4 373 aaKnown RBP13.27□□□□□ -0.29
COL6A3-214ENST00000493608 LPIN2Q92539 896 aa13.27□□□□□ -0.29
COL6A3-214ENST00000493608 DEFB129Q9H1M3 183 aa13.27□□□□□ -0.29
COL6A3-214ENST00000493608 MYH13Q9UKX3 1938 aa13.27□□□□□ -0.29
COL6A3-214ENST00000493608 SRGAP3O43295 1099 aa13.26□□□□□ -0.29
COL6A3-214ENST00000493608 NF2P35240 595 aa13.26□□□□□ -0.29
COL6A3-214ENST00000493608 KIF23Q02241 960 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-214ENST00000493608 ATP2B3Q16720 1220 aa13.26□□□□□ -0.29
COL6A3-214ENST00000493608 ZBED9Q6R2W3 1325 aa13.26□□□□□ -0.29
COL6A3-214ENST00000493608 POTEEQ6S8J3 1075 aa13.26□□□□□ -0.29
COL6A3-214ENST00000493608 CCDC102AQ96A19 550 aa13.26□□□□□ -0.29
COL6A3-214ENST00000493608 TDRD3Q9H7E2 651 aaKnown RBP13.26□□□□□ -0.29
COL6A3-214ENST00000493608 PRDM10Q9NQV6 1147 aa13.26□□□□□ -0.29
COL6A3-214ENST00000493608 CASP8AP2Q9UKL3 1982 aa13.26□□□□□ -0.29
COL6A3-214ENST00000493608 PAPPA2Q9BXP8 1791 aa13.25□□□□□ -0.29
COL6A3-214ENST00000493608 MYO1BO43795 1136 aa13.25□□□□□ -0.29
COL6A3-214ENST00000493608 CIAO1O76071 339 aa13.25□□□□□ -0.29
COL6A3-214ENST00000493608 GNAI2P04899 355 aa13.25□□□□□ -0.29
COL6A3-214ENST00000493608 SLC10A3P09131 477 aa13.25□□□□□ -0.29
COL6A3-214ENST00000493608 IL15P40933 162 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-214ENST00000493608 CRKP46108 304 aa13.25□□□□□ -0.29
COL6A3-214ENST00000493608 TIMM10P62072 90 aa13.25□□□□□ -0.29
COL6A3-214ENST00000493608 DZIP1LQ8IYY4 767 aaKnown RBP13.25□□□□□ -0.29
COL6A3-214ENST00000493608 COPRSQ9NQ92 184 aa13.25□□□□□ -0.29
COL6A3-214ENST00000493608 AKAP11Q9UKA4 1901 aa13.24□□□□□ -0.29
COL6A3-214ENST00000493608 PNMA6EA0A0J9YXQ4 647 aa13.24□□□□□ -0.29
COL6A3-214ENST00000493608 RLBP1P12271 317 aa13.24□□□□□ -0.29
COL6A3-214ENST00000493608 ADORA1P30542 326 aa13.24□□□□□ -0.29
COL6A3-214ENST00000493608 FKBP1BP68106 108 aa13.24□□□□□ -0.29
COL6A3-214ENST00000493608 NBPF12Q5TAG4 269 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-214ENST00000493608 RASAL3Q86YV0 1011 aa13.24□□□□□ -0.29
COL6A3-214ENST00000493608 TBC1D22AQ8WUA7 517 aa13.24□□□□□ -0.29
COL6A3-214ENST00000493608 ZNF70Q9UC06 446 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-214ENST00000493608 SERPINA10Q9UK55 444 aa13.24□□□□□ -0.29
COL6A3-214ENST00000493608 ANGEL1Q9UNK9 670 aaKnown RBP13.24□□□□□ -0.29
COL6A3-214ENST00000493608 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-214ENST00000493608 ARAP2Q8WZ64 1704 aa13.24□□□□□ -0.29
COL6A3-214ENST00000493608 TCP10L2B9ZVM9 353 aa13.23□□□□□ -0.29
COL6A3-214ENST00000493608 PHKA1P46020 1223 aa13.23□□□□□ -0.29
COL6A3-214ENST00000493608 TFCP2Q12800 502 aa13.23□□□□□ -0.29
COL6A3-214ENST00000493608 RASA3Q14644 834 aa13.23□□□□□ -0.29
COL6A3-214ENST00000493608 PPP1R15BQ5SWA1 713 aa13.23□□□□□ -0.29
COL6A3-214ENST00000493608 ARMC9Q7Z3E5 817 aa13.23□□□□□ -0.29
COL6A3-214ENST00000493608 FTSJ3Q8IY81 847 aaKnown RBP13.23□□□□□ -0.29
COL6A3-214ENST00000493608 OXER1Q8TDS5 423 aa13.23□□□□□ -0.29
COL6A3-214ENST00000493608 CSRNP1Q96S65 589 aa13.23□□□□□ -0.29
COL6A3-214ENST00000493608 C1orf115Q9H7X2 142 aa13.23□□□□□ -0.29
COL6A3-214ENST00000493608 PDE4AP27815 886 aa13.22□□□□□ -0.29
COL6A3-214ENST00000493608 CACNB3P54284 484 aa13.22□□□□□ -0.29
COL6A3-214ENST00000493608 MTX1Q13505 466 aa13.22□□□□□ -0.29
COL6A3-214ENST00000493608 ITPRIPQ8IWB1 547 aa13.22□□□□□ -0.29
COL6A3-214ENST00000493608 TRPA1O75762 1119 aa13.21□□□□□ -0.29
COL6A3-214ENST00000493608 PBX2P40425 430 aa13.21□□□□□ -0.29
COL6A3-214ENST00000493608 WDR66Q8TBY9 1149 aa13.21□□□□□ -0.29
COL6A3-214ENST00000493608 TEKT1Q969V4 418 aa13.21□□□□□ -0.29
COL6A3-214ENST00000493608 NEUROD6Q96NK8 337 aa13.21□□□□□ -0.29
COL6A3-214ENST00000493608 TMEM39BQ9GZU3 492 aa13.21□□□□□ -0.29
COL6A3-214ENST00000493608 RNF186Q9NXI6 227 aa13.21□□□□□ -0.29
COL6A3-214ENST00000493608 COL1A1P02452 1464 aaPredicted RBP13.21□□□□□ -0.3
COL6A3-214ENST00000493608 CA12O43570 354 aa13.2□□□□□ -0.3
COL6A3-214ENST00000493608 LSM11P83369 360 aaKnown RBP eCLIP13.2□□□□□ -0.3
COL6A3-214ENST00000493608 G3BP1Q13283 466 aaKnown RBP eCLIP13.2□□□□□ -0.3
COL6A3-214ENST00000493608 SUPT20HL1Q3ZLR7 823 aa13.2□□□□□ -0.3
COL6A3-214ENST00000493608 CCDC102BQ68D86 513 aa13.2□□□□□ -0.3
COL6A3-214ENST00000493608 PANK1Q8TE04 598 aa13.2□□□□□ -0.3
COL6A3-214ENST00000493608 CLMNQ96JQ2 1002 aa13.2□□□□□ -0.3
COL6A3-214ENST00000493608 GNL3LQ9NVN8 582 aaKnown RBP13.2□□□□□ -0.3
COL6A3-214ENST00000493608 PPP2R3BQ9Y5P8 575 aa13.2□□□□□ -0.3
COL6A3-214ENST00000493608 SSC5DA1L4H1 1573 aa13.2□□□□□ -0.3
COL6A3-214ENST00000493608 A0A1B0GUL7 405 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms