RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 TBC1D9Q6ZT07 1266 aa30.35■■■□□ 2.45
UPF3A-209ENST00000492270 DZIP1Q86YF9 867 aaKnown RBP30.35■■■□□ 2.45
UPF3A-209ENST00000492270 EAF2Q96CJ1 260 aaPredicted RBP30.35■■■□□ 2.45
UPF3A-209ENST00000492270 CLMNQ96JQ2 1002 aa30.35■■■□□ 2.45
UPF3A-209ENST00000492270 CSRNP1Q96S65 589 aa30.35■■■□□ 2.45
UPF3A-209ENST00000492270 CCDC8Q9H0W5 538 aaPredicted RBP30.35■■■□□ 2.45
UPF3A-209ENST00000492270 PRDM10Q9NQV6 1147 aa30.35■■■□□ 2.45
UPF3A-209ENST00000492270 DBNLQ9UJU6 430 aaKnown RBP30.35■■■□□ 2.45
UPF3A-209ENST00000492270 TTC39AQ5SRH9 613 aa30.34■■■□□ 2.45
UPF3A-209ENST00000492270 RPAP2Q8IXW5 612 aaPredicted RBP30.34■■■□□ 2.45
UPF3A-209ENST00000492270 DOCK2Q92608 1830 aa30.33■■■□□ 2.45
UPF3A-209ENST00000492270 GAKO14976 1311 aa30.33■■■□□ 2.45
UPF3A-209ENST00000492270 UQCRFS1P1P0C7P4 283 aa30.33■■■□□ 2.45
UPF3A-209ENST00000492270 FKBP1CQ5VVH2 108 aa30.33■■■□□ 2.45
UPF3A-209ENST00000492270 SPTY2D1Q68D10 685 aaPredicted RBP30.33■■■□□ 2.45
UPF3A-209ENST00000492270 FAM83AQ86UY5 434 aa30.33■■■□□ 2.45
UPF3A-209ENST00000492270 ZNF384Q8TF68 577 aa30.33■■■□□ 2.45
UPF3A-209ENST00000492270 SNRKQ9NRH2 765 aa30.33■■■□□ 2.45
UPF3A-209ENST00000492270 ERICH6Q7L0X2 663 aa30.32■■■□□ 2.44
UPF3A-209ENST00000492270 CA12O43570 354 aa30.31■■■□□ 2.44
UPF3A-209ENST00000492270 IREB2P48200 963 aaKnown RBP30.31■■■□□ 2.44
UPF3A-209ENST00000492270 MECOMQ03112 1051 aa30.31■■■□□ 2.44
UPF3A-209ENST00000492270 NFIAQ12857 509 aa30.31■■■□□ 2.44
UPF3A-209ENST00000492270 CCDC158Q5M9N0 1113 aa30.31■■■□□ 2.44
UPF3A-209ENST00000492270 CHMP4BQ9H444 224 aaKnown RBP30.31■■■□□ 2.44
UPF3A-209ENST00000492270 USP40Q9NVE5 1235 aa30.31■■■□□ 2.44
UPF3A-209ENST00000492270 RPAP1Q9BWH6 1393 aaPredicted RBP30.3■■■□□ 2.44
UPF3A-209ENST00000492270 ERC1Q8IUD2 1116 aa30.3■■■□□ 2.44
UPF3A-209ENST00000492270 TNS4Q8IZW8 715 aa30.3■■■□□ 2.44
UPF3A-209ENST00000492270 MROH7-TTC4A0A0A0MT08 1334 aa30.29■■■□□ 2.44
UPF3A-209ENST00000492270 APBB1O00213 710 aa30.29■■■□□ 2.44
UPF3A-209ENST00000492270 TCP10Q12799 353 aa30.29■■■□□ 2.44
UPF3A-209ENST00000492270 SPRYD7Q5W111 196 aa30.29■■■□□ 2.44
UPF3A-209ENST00000492270 SLC10A4Q96EP9 437 aa30.29■■■□□ 2.44
UPF3A-209ENST00000492270 IL1RAPL2Q9NP60 686 aa30.29■■■□□ 2.44
UPF3A-209ENST00000492270 CDK5RAP2Q96SN8 1893 aa30.29■■■□□ 2.44
UPF3A-209ENST00000492270 HMMRO75330 724 aa30.28■■■□□ 2.44
UPF3A-209ENST00000492270 RHPN1Q8TCX5 695 aa30.28■■■□□ 2.44
UPF3A-209ENST00000492270 NSUN4Q96CB9 384 aaKnown RBP30.28■■■□□ 2.44
UPF3A-209ENST00000492270 RNF186Q9NXI6 227 aa30.28■■■□□ 2.44
UPF3A-209ENST00000492270 FAM198AQ9UFP1 575 aa30.28■■■□□ 2.44
UPF3A-209ENST00000492270 RFX7Q2KHR2 1363 aa30.28■■■□□ 2.44
UPF3A-209ENST00000492270 BTDP43251 543 aa30.27■■■□□ 2.44
UPF3A-209ENST00000492270 HSP90AB4PQ58FF6 505 aa30.27■■■□□ 2.44
UPF3A-209ENST00000492270 AACSQ86V21 672 aa30.27■■■□□ 2.44
UPF3A-209ENST00000492270 ANKRD13AQ8IZ07 590 aa30.27■■■□□ 2.44
UPF3A-209ENST00000492270 FAM151AQ8WW52 585 aa30.27■■■□□ 2.44
UPF3A-209ENST00000492270 FAM163AQ96GL9 167 aaPredicted RBP30.27■■■□□ 2.44
UPF3A-209ENST00000492270 RAI14Q9P0K7 980 aa30.27■■■□□ 2.44
UPF3A-209ENST00000492270 TRPA1O75762 1119 aa30.26■■■□□ 2.43
UPF3A-209ENST00000492270 SLF2Q8IX21 1173 aa30.26■■■□□ 2.43
UPF3A-209ENST00000492270 WNK4Q96J92 1243 aa30.26■■■□□ 2.43
UPF3A-209ENST00000492270 ZNF512BQ96KM6 892 aaPredicted RBP30.26■■■□□ 2.43
UPF3A-209ENST00000492270 CYP2E1P05181 493 aaPredicted RBP30.25■■■□□ 2.43
UPF3A-209ENST00000492270 ZAP70P43403 619 aa30.25■■■□□ 2.43
UPF3A-209ENST00000492270 IFFO2Q5TF58 517 aa30.25■■■□□ 2.43
UPF3A-209ENST00000492270 ZFPM1Q8IX07 1006 aa30.25■■■□□ 2.43
UPF3A-209ENST00000492270 ELP3Q9H9T3 547 aa30.25■■■□□ 2.43
UPF3A-209ENST00000492270 SAGE1Q9NXZ1 904 aa30.25■■■□□ 2.43
UPF3A-209ENST00000492270 LRP2BPQ9P2M1 347 aa30.25■■■□□ 2.43
UPF3A-209ENST00000492270 UNCXA6NJT0 531 aa30.24■■■□□ 2.43
UPF3A-209ENST00000492270 GJA5P36382 358 aa30.24■■■□□ 2.43
UPF3A-209ENST00000492270 PPP1R3FQ6ZSY5 799 aaPredicted RBP30.24■■■□□ 2.43
UPF3A-209ENST00000492270 REM2Q8IYK8 340 aaPredicted RBP30.24■■■□□ 2.43
UPF3A-209ENST00000492270 DDX55Q8NHQ9 600 aaKnown RBP eCLIP30.24■■■□□ 2.43
UPF3A-209ENST00000492270 RGS3P49796 1198 aa30.23■■■□□ 2.43
UPF3A-209ENST00000492270 RRP1P56182 461 aaKnown RBP30.23■■■□□ 2.43
UPF3A-209ENST00000492270 NDUFB9Q9Y6M9 179 aa30.23■■■□□ 2.43
UPF3A-209ENST00000492270 FOCADQ5VW36 1801 aa30.22■■■□□ 2.43
UPF3A-209ENST00000492270 GPR75-ASB3A0A0A6YYF3 556 aa30.22■■■□□ 2.43
UPF3A-209ENST00000492270 KIF1BPQ96EK5 621 aa30.22■■■□□ 2.43
UPF3A-209ENST00000492270 IDI2Q9BXS1 227 aa30.22■■■□□ 2.43
UPF3A-209ENST00000492270 BCL11AQ9H165 835 aa30.22■■■□□ 2.43
UPF3A-209ENST00000492270 WDHD1O75717 1129 aaPredicted RBP30.21■■■□□ 2.43
UPF3A-209ENST00000492270 ZBTB48P10074 688 aaPredicted RBP30.21■■■□□ 2.43
UPF3A-209ENST00000492270 TM4SF4P48230 202 aa30.21■■■□□ 2.43
UPF3A-209ENST00000492270 RHBDL3P58872 404 aa30.21■■■□□ 2.43
UPF3A-209ENST00000492270 GSTO1P78417 241 aa30.21■■■□□ 2.43
UPF3A-209ENST00000492270 MAP3K9P80192 1104 aa30.21■■■□□ 2.43
UPF3A-209ENST00000492270 VGLL4Q14135 290 aa30.21■■■□□ 2.43
UPF3A-209ENST00000492270 MIGA2Q7L4E1 593 aa30.21■■■□□ 2.43
UPF3A-209ENST00000492270 DDX4Q9NQI0 724 aaKnown RBP30.21■■■□□ 2.43
UPF3A-209ENST00000492270 PIH1D3Q9NQM4 214 aaKnown RBP30.21■■■□□ 2.43
UPF3A-209ENST00000492270 CNKSR2Q8WXI2 1034 aa30.2■■■□□ 2.43
UPF3A-209ENST00000492270 LDHCP07864 332 aa30.19■■■□□ 2.42
UPF3A-209ENST00000492270 SREBF2Q12772 1141 aa30.19■■■□□ 2.42
UPF3A-209ENST00000492270 PICALMQ13492 652 aa30.19■■■□□ 2.42
UPF3A-209ENST00000492270 OPTNQ96CV9 577 aa30.19■■■□□ 2.42
UPF3A-209ENST00000492270 HOOK2Q96ED9 719 aa30.19■■■□□ 2.42
UPF3A-209ENST00000492270 WRNIP1Q96S55 665 aa30.19■■■□□ 2.42
UPF3A-209ENST00000492270 DCAF15Q66K64 600 aa30.18■■■□□ 2.42
UPF3A-209ENST00000492270 CLASRPQ8N2M8 674 aaKnown RBP30.18■■■□□ 2.42
UPF3A-209ENST00000492270 RAB11FIP3O75154 756 aa30.17■■■□□ 2.42
UPF3A-209ENST00000492270 ENTPD3O75355 529 aa30.17■■■□□ 2.42
UPF3A-209ENST00000492270 SH3BP5LQ7L8J4 393 aa30.17■■■□□ 2.42
UPF3A-209ENST00000492270 ADGRA1Q86SQ6 560 aa30.17■■■□□ 2.42
UPF3A-209ENST00000492270 ZKSCAN4Q969J2 545 aaPredicted RBP30.17■■■□□ 2.42
UPF3A-209ENST00000492270 ZNF341Q9BYN7 854 aa30.17■■■□□ 2.42
UPF3A-209ENST00000492270 CSADQ9Y600 493 aa30.17■■■□□ 2.42
UPF3A-209ENST00000492270 SNCAIPQ9Y6H5 919 aa30.17■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms