RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 FBXO3Q9UK99 471 aa15.48■□□□□ 0.07
CPSF3-204ENST00000489403 DAGLAQ9Y4D2 1042 aa15.48■□□□□ 0.07
CPSF3-204ENST00000489403 BTBD19C9JJ37 291 aa15.47■□□□□ 0.07
CPSF3-204ENST00000489403 CIAO1O76071 339 aa15.47■□□□□ 0.07
CPSF3-204ENST00000489403 CETPP11597 493 aa15.47■□□□□ 0.07
CPSF3-204ENST00000489403 DIXDC1Q155Q3 683 aa15.47■□□□□ 0.07
CPSF3-204ENST00000489403 ATP2B3Q16720 1220 aa15.47■□□□□ 0.07
CPSF3-204ENST00000489403 FAM151AQ8WW52 585 aa15.47■□□□□ 0.07
CPSF3-204ENST00000489403 ZNF341Q9BYN7 854 aa15.47■□□□□ 0.07
CPSF3-204ENST00000489403 NOB1Q9ULX3 412 aaKnown RBP15.47■□□□□ 0.07
CPSF3-204ENST00000489403 AK9Q5TCS8 1911 aa15.47■□□□□ 0.07
CPSF3-204ENST00000489403 TLR2O60603 784 aa15.46■□□□□ 0.07
CPSF3-204ENST00000489403 INPP5BP32019 993 aa15.46■□□□□ 0.07
CPSF3-204ENST00000489403 PPIL2Q13356 520 aa15.46■□□□□ 0.07
CPSF3-204ENST00000489403 SNAPC2Q13487 334 aa15.46■□□□□ 0.07
CPSF3-204ENST00000489403 CDC42EP5Q6NZY7 148 aa15.46■□□□□ 0.07
CPSF3-204ENST00000489403 MIGA2Q7L4E1 593 aa15.46■□□□□ 0.07
CPSF3-204ENST00000489403 ZCCHC17Q9NP64 241 aaKnown RBP15.46■□□□□ 0.07
CPSF3-204ENST00000489403 CEP126Q9P2H0 1117 aa15.46■□□□□ 0.07
CPSF3-204ENST00000489403 PTCH2Q9Y6C5 1203 aa15.46■□□□□ 0.07
CPSF3-204ENST00000489403 SALL1Q9NSC2 1324 aa15.45■□□□□ 0.06
CPSF3-204ENST00000489403 CT47B1P0C2W7 299 aaPredicted RBP15.45■□□□□ 0.06
CPSF3-204ENST00000489403 PHKA1P46020 1223 aa15.45■□□□□ 0.06
CPSF3-204ENST00000489403 PPATQ06203 517 aa15.45■□□□□ 0.06
CPSF3-204ENST00000489403 TCP10Q12799 353 aa15.45■□□□□ 0.06
CPSF3-204ENST00000489403 NFIAQ12857 509 aa15.45■□□□□ 0.06
CPSF3-204ENST00000489403 PPP4R3CPQ6ZMV5 832 aa15.45■□□□□ 0.06
CPSF3-204ENST00000489403 ZNF333Q96JL9 665 aa15.45■□□□□ 0.06
CPSF3-204ENST00000489403 PA2G4Q9UQ80 394 aaKnown RBP15.45■□□□□ 0.06
CPSF3-204ENST00000489403 LRRFIP2Q9Y608 721 aaKnown RBP15.45■□□□□ 0.06
CPSF3-204ENST00000489403 LDHBP07195 334 aaKnown RBP15.44■□□□□ 0.06
CPSF3-204ENST00000489403 EN2P19622 333 aaPredicted RBP15.44■□□□□ 0.06
CPSF3-204ENST00000489403 IL15P40933 162 aaPredicted RBP15.44■□□□□ 0.06
CPSF3-204ENST00000489403 ARHGEF6Q15052 776 aa15.44■□□□□ 0.06
CPSF3-204ENST00000489403 MEIS3Q99687 375 aa15.44■□□□□ 0.06
CPSF3-204ENST00000489403 API5Q9BZZ5 524 aaKnown RBP15.44■□□□□ 0.06
CPSF3-204ENST00000489403 ARHGAP39Q9C0H5 1083 aa15.44■□□□□ 0.06
CPSF3-204ENST00000489403 GNL3LQ9NVN8 582 aaKnown RBP15.44■□□□□ 0.06
CPSF3-204ENST00000489403 FAM198AQ9UFP1 575 aa15.44■□□□□ 0.06
CPSF3-204ENST00000489403 ZNF112Q9UJU3 913 aa15.44■□□□□ 0.06
CPSF3-204ENST00000489403 DENND2AQ9ULE3 1009 aa15.44■□□□□ 0.06
CPSF3-204ENST00000489403 DOCK2Q92608 1830 aa15.44■□□□□ 0.06
CPSF3-204ENST00000489403 MYH2Q9UKX2 1941 aa15.44■□□□□ 0.06
CPSF3-204ENST00000489403 SEMA3EO15041 775 aa15.43■□□□□ 0.06
CPSF3-204ENST00000489403 WDHD1O75717 1129 aaPredicted RBP15.43■□□□□ 0.06
CPSF3-204ENST00000489403 ADORA1P30542 326 aa15.43■□□□□ 0.06
CPSF3-204ENST00000489403 LACTBP83111 547 aaPredicted RBP15.43■□□□□ 0.06
CPSF3-204ENST00000489403 SLC9C1Q4G0N8 1177 aa15.43■□□□□ 0.06
CPSF3-204ENST00000489403 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.43■□□□□ 0.06
CPSF3-204ENST00000489403 COPRSQ9NQ92 184 aa15.43■□□□□ 0.06
CPSF3-204ENST00000489403 ATRNL1Q5VV63 1379 aa15.42■□□□□ 0.06
CPSF3-204ENST00000489403 ZBTB22O15209 634 aa15.42■□□□□ 0.06
CPSF3-204ENST00000489403 NOL9Q5SY16 702 aaKnown RBP15.42■□□□□ 0.06
CPSF3-204ENST00000489403 CCDC102BQ68D86 513 aa15.42■□□□□ 0.06
CPSF3-204ENST00000489403 USP40Q9NVE5 1235 aa15.42■□□□□ 0.06
CPSF3-204ENST00000489403 KCNH4Q9UQ05 1017 aa15.42■□□□□ 0.06
CPSF3-204ENST00000489403 RFX7Q2KHR2 1363 aa15.41■□□□□ 0.06
CPSF3-204ENST00000489403 RARSP54136 660 aaKnown RBP15.41■□□□□ 0.06
CPSF3-204ENST00000489403 KIF22Q14807 665 aa15.41■□□□□ 0.06
CPSF3-204ENST00000489403 C17orf99Q6UX52 265 aa15.41■□□□□ 0.06
CPSF3-204ENST00000489403 ANKRD23Q86SG2 305 aa15.41■□□□□ 0.06
CPSF3-204ENST00000489403 NBPF11Q86T75 865 aa15.41■□□□□ 0.06
CPSF3-204ENST00000489403 ZFPM1Q8IX07 1006 aa15.41■□□□□ 0.06
CPSF3-204ENST00000489403 PCDH10Q9P2E7 1040 aa15.41■□□□□ 0.06
CPSF3-204ENST00000489403 HDAC5Q9UQL6 1122 aa15.41■□□□□ 0.06
CPSF3-204ENST00000489403 KIAA0100Q14667 2235 aaKnown RBP15.41■□□□□ 0.06
CPSF3-204ENST00000489403 GAKO14976 1311 aa15.41■□□□□ 0.06
CPSF3-204ENST00000489403 MOGSQ13724 837 aa15.4■□□□□ 0.06
CPSF3-204ENST00000489403 RASGRF1Q13972 1273 aa15.4■□□□□ 0.06
CPSF3-204ENST00000489403 ZGPATQ8N5A5 531 aaKnown RBP15.4■□□□□ 0.06
CPSF3-204ENST00000489403 SH3TC2Q8TF17 1288 aa15.4■□□□□ 0.06
CPSF3-204ENST00000489403 TMEM106CQ9BVX2 250 aa15.4■□□□□ 0.06
CPSF3-204ENST00000489403 IDI2Q9BXS1 227 aa15.4■□□□□ 0.06
CPSF3-204ENST00000489403 CPA4Q9UI42 421 aa15.4■□□□□ 0.06
CPSF3-204ENST00000489403 ADGRA2Q96PE1 1338 aa15.4■□□□□ 0.06
CPSF3-204ENST00000489403 PDHXO00330 501 aa15.39■□□□□ 0.05
CPSF3-204ENST00000489403 ECM2O94769 699 aaPredicted RBP15.39■□□□□ 0.05
CPSF3-204ENST00000489403 CTGFP29279 349 aa15.39■□□□□ 0.05
CPSF3-204ENST00000489403 RGS3P49796 1198 aa15.39■□□□□ 0.05
CPSF3-204ENST00000489403 TIMM10P62072 90 aa15.39■□□□□ 0.05
CPSF3-204ENST00000489403 GCC1Q96CN9 775 aa15.39■□□□□ 0.05
CPSF3-204ENST00000489403 PDS5AQ29RF7 1337 aaKnown RBP15.39■□□□□ 0.05
CPSF3-204ENST00000489403 A0A1B0GUL7 405 aa15.38■□□□□ 0.05
CPSF3-204ENST00000489403 PHF20L1A8MW92 1017 aa15.38■□□□□ 0.05
CPSF3-204ENST00000489403 SRGAP3O43295 1099 aa15.38■□□□□ 0.05
CPSF3-204ENST00000489403 GNRH1P01148 92 aa15.38■□□□□ 0.05
CPSF3-204ENST00000489403 KCNA4P22459 653 aa15.38■□□□□ 0.05
CPSF3-204ENST00000489403 SLC4A8Q2Y0W8 1093 aa15.38■□□□□ 0.05
CPSF3-204ENST00000489403 SH3BP5LQ7L8J4 393 aa15.38■□□□□ 0.05
CPSF3-204ENST00000489403 DZIP1Q86YF9 867 aaKnown RBP15.38■□□□□ 0.05
CPSF3-204ENST00000489403 ARHGAP45Q92619 1136 aa15.38■□□□□ 0.05
CPSF3-204ENST00000489403 ABCF2Q9UG63 623 aa15.38■□□□□ 0.05
CPSF3-204ENST00000489403 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.38■□□□□ 0.05
CPSF3-204ENST00000489403 DOCK1Q14185 1865 aa15.37■□□□□ 0.05
CPSF3-204ENST00000489403 ENTPD3O75355 529 aa15.37■□□□□ 0.05
CPSF3-204ENST00000489403 MYCP01106 439 aaPredicted RBP15.37■□□□□ 0.05
CPSF3-204ENST00000489403 GNAI3P08754 354 aa15.37■□□□□ 0.05
CPSF3-204ENST00000489403 PRMT2P55345 433 aa15.37■□□□□ 0.05
CPSF3-204ENST00000489403 TFCP2Q12800 502 aa15.37■□□□□ 0.05
CPSF3-204ENST00000489403 MTX1Q13505 466 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms